BAC Information

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BAC

Clone NameB6Ng01-302C09
Chromosome3 (Build37)X (Build37)
Map Location 127,391,144 - 127,391,22065,929,969 - 65,931,092
singlet/doubletsingletsinglet
Overlap geneAlpk1
Upstream geneCamk2d, Ank2, LOC100043749, LOC100043361, LOC100043364, Larp7, 4930422G04Rik, Neurog2
Downstream geneT2bp, BC002199, 5730508B09Rik, LOC100043382, EG668828
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-302C09.bB6Ng01-302C09.g
ACCGA096276GA096277
length3021,135
definitionB6Ng01-302C09.b B6Ng01-302C09.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(127,391,144 - 127,391,220)(65,929,969 - 65,931,092)
sequence
aatcttaaaaggcacttatgataggaaaatattgaaagagagcacgtgga
tccatacactagactaacacgggaatggaacgcgggaatgaaaaattact
gtatgggtagggaacgctagactccaggaggagagcttccttgaaactct
tttgcctcatgagtgacttttaagcctctcggcttgtccagttgactcga
ccagagagcgtagcagattccagcatcagcagaaagaaagagagagagag
agagagagagagagagagagagagagagagagagcgccagggagggaggg
ag
taataaaaagagctgacagagagagttgaacacttgttaattccttttta
ctcgacttctgcctcttctacatgccccctgtaccagagggagggcatca
gtaaagcagtcatgggatctgtctatgtgcatcattgggtcctttccatg
cagctctctgcctttgccttctacagcagaaccaaaatcacctccccacc
cctttggcctctgtattgggcttatatccagcctgacccatgctccttta
atccagaaggcttgcatccaactgagaagttcattgaatgcctaccatgt
gccaagcactgtcctaagtactagtgagtccttggtgaggtagcaacaaa
aagactgtcactattgaaattggaacctacaggagtagatgtgcaaaatt
caacttctcaaaaccgtaagtgtggagctggagaggtggctcaagggggt
aaaacatttgctatgcgagcatgaaatcctgaattttctaattcctagaa
tctatagaaagctgggcctaagtgcctaaataagcactcccacaaagttg
attccccagaagttcacaggtcagtgtgccttatctagtttcgaacaaca
aaaagagagactctgggtagaaggcaaggactgcattagaagttgtactg
tgacccccacacatgtttttgtggcatatgtgtggccatactcacacaca
tggatgctacacacacatacacgcatgaagaagatataaatatggagtca
caactgtgatgtggtctataaagtgtggttatatcttttacagttggaaa
tgagcctgtctgtggtgtgagataagtgagcccggaagcaagatgattcc
aactggaatgtgacaagaaagacttatttggaagtgtgcacttgaaagag
caaagggtgagttgtccttaagcagatggtagagggctaggatgtgaggc
tttccagtttcccagcctgcctcagccggaacatatttaatgttgttgca
acttcagctttaaagcagtggatcaaggggccacatttccttgaagctta
tgggtaaacagaatgacccaattgaactaagatttcttgggagctagccc
caatatatagatcctgtagggttggaattacaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_127391144_127391220
seq2: B6Ng01-302C09.b_282_353 (reverse)

seq1  CTCCCTCCCTCCCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  50
          |||||||||||| ||  | |||||||||||||||||||||||||||
seq2  ----CTCCCTCCCTCC-CTGGCGCTCTCTCTCTCTCTCTCTCTCTCTCTC  45

seq1  TCTCTCTCTCTCTCTCTCTTTCTTTCT  77
      |||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTTTCTTTCT  72

seq1: chrX_65929969_65931092
seq2: B6Ng01-302C09.g_73_1207 (reverse)

seq1  ATTTGTA--TTCAACCCTACAGGATTCTTAATATATTGTGGCTA-CTCCA  47
      |||||||  | ||||||||||||| |||  |||||||| ||||| |||| 
seq2  ATTTGTAATTCCAACCCTACAGGA-TCT--ATATATTGGGGCTAGCTCCC  47

seq1  AAG--ATCCTAGTTCAA-TGGGTCATTTCTGTTTA-CCAT-AGCCTCAAG  92
      |||  ||| |||||||| ||||||| ||||||||| |||| ||| |||||
seq2  AAGAAATCTTAGTTCAATTGGGTCA-TTCTGTTTACCCATAAGCTTCAAG  96

seq1  G-AATGTGG-CCCTTGATCCACTGCTTTAAAGCTGGAGTTGCAACAACAT  140
      | ||||||| ||||||||||||||||||||||||| ||||||||||||||
seq2  GAAATGTGGCCCCTTGATCCACTGCTTTAAAGCTGAAGTTGCAACAACAT  146

seq1  TAATATTGTTCCGGCTGAGGCAGGCTGGG-AACTGG-AAGCCTCACATCC  188
      |||   ||||||||||||||||||||||| |||||| |||||||||||||
seq2  TAAATATGTTCCGGCTGAGGCAGGCTGGGAAACTGGAAAGCCTCACATCC  196

seq1  TAGCCCTCTACCATCTGCTT-AGGACAACTCACCC-TTGCTCTTTCAAGT  236
      |||||||||||||||||||| |||||||||||||| ||||||||||||||
seq2  TAGCCCTCTACCATCTGCTTAAGGACAACTCACCCTTTGCTCTTTCAAGT  246

seq1  GCACACTTCCAAATAAGTCTTTCTTGTCACATTCCAGTTGGAATCATCTT  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACTTCCAAATAAGTCTTTCTTGTCACATTCCAGTTGGAATCATCTT  296

seq1  GCTTCCGGGCTCACTTATCTCACACCACAGACAGGCTCATTTCCAACTGT  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCGGGCTCACTTATCTCACACCACAGACAGGCTCATTTCCAACTGT  346

seq1  AAAAGATATAACCACACTTTATAGACCACATCACAGTTGTGACTCCATAT  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATATAACCACACTTTATAGACCACATCACAGTTGTGACTCCATAT  396

seq1  TTATATCTTCTTCATGCGTGTATGTGTGTGTAGCATCCATGTGTGTGAGT  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATCTTCTTCATGCGTGTATGTGTGTGTAGCATCCATGTGTGTGAGT  446

seq1  ATGGCCACACATATGCCAC-AAAACATGTGTGGGGGTCACAGTACAACTT  485
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATGGCCACACATATGCCACAAAAACATGTGTGGGGGTCACAGTACAACTT  496

seq1  CTAATGCAGTCCTTGCCTTCTACCCAGAGTCTCTCTTTTTGTTGTTCGAA  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGCAGTCCTTGCCTTCTACCCAGAGTCTCTCTTTTTGTTGTTCGAA  546

seq1  ACTAGATAAGGCACACTGACCTGTGAACTTCTGGGGAATCAACTTTGTGG  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGATAAGGCACACTGACCTGTGAACTTCTGGGGAATCAACTTTGTGG  596

seq1  GAGTGCTTATTTAGGCACTTAGGCCCAGCTTTCTATAGATTCTAGGAATT  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCTTATTTAGGCACTTAGGCCCAGCTTTCTATAGATTCTAGGAATT  646

seq1  AGAAAATTCAGGATTTCATGCTCGCATAGCAAATGTTTTACCCCCTTGAG  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATTCAGGATTTCATGCTCGCATAGCAAATGTTTTACCCCCTTGAG  696

seq1  CCACCTCTCCAGCTCCACACTTACGGTTTTGAGAAGTTGAATTTTGCACA  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTCTCCAGCTCCACACTTACGGTTTTGAGAAGTTGAATTTTGCACA  746

seq1  TCTACTCCTGTAGGTTCCAATTTCAATAGTGACAGTCTTTTTGTTGCTAC  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTCCTGTAGGTTCCAATTTCAATAGTGACAGTCTTTTTGTTGCTAC  796

seq1  CTCACCAAGGACTCACTAGTACTTAGGACAGTGCTTGGCACATGGTAGGC  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCAAGGACTCACTAGTACTTAGGACAGTGCTTGGCACATGGTAGGC  846

seq1  ATTCAATGAACTTCTCAGTTGGATGCAAGCCTTCTGGATTAAAGGAGCAT  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAATGAACTTCTCAGTTGGATGCAAGCCTTCTGGATTAAAGGAGCAT  896

seq1  GGGTCAGGCTGGATATAAGCCCAATACAGAGGCCAAAGGGGTGGGGAGGT  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAGGCTGGATATAAGCCCAATACAGAGGCCAAAGGGGTGGGGAGGT  946

seq1  GATTTTGGTTCTGCTGTAGAAGGCAAAGGCAGAGAGCTGCATGGAAAGGA  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTGGTTCTGCTGTAGAAGGCAAAGGCAGAGAGCTGCATGGAAAGGA  996

seq1  CCCAATGATGCACATAGACAGATCCCATGACTGCTTTACTGATGCCCTCC  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATGATGCACATAGACAGATCCCATGACTGCTTTACTGATGCCCTCC  1046

seq1  CTCTGGTACAGGGGGCATGTAGAAGAGGCAGAAGTCGAGTAAAAAGGAAT  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTACAGGGGGCATGTAGAAGAGGCAGAAGTCGAGTAAAAAGGAAT  1096

seq1  TAACAAGTGTTCAACTCTCTCTGTCAGCTCTTTTTATTA  1124
      |||||||||||||||||||||||||||||||||||||||
seq2  TAACAAGTGTTCAACTCTCTCTGTCAGCTCTTTTTATTA  1135