BAC Information

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BAC

Clone NameB6Ng01-302E05
Chromosome3 (Build37)3 (Build37)
Map Location 122,884,090 - 122,884,92532,335,405 - 32,336,475
singlet/doubletsingletsinglet
Overlap geneSynpo2
Upstream geneEG668788, LOC626807, LOC100043724, Gclm, Ppia-ps3_1245.1, Dnttip2, LOC675117, LOC100043726, Bcar3, Fnbp1l, Ppia-ps3_2252.1, Pde5a, LOC668792, Fabp2, 1810037I17Rik, Usp53, Myoz2
Downstream geneSec24d, G430022H21Rik, Prss12, EG668804, Ndst3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-302E05.bB6Ng01-302E05.g
ACCGA096359GA096360
length1,0911,083
definitionB6Ng01-302E05.b B6Ng01-302E05.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(122,884,090 - 122,884,925)(32,335,405 - 32,336,475)
sequence
gaattcccagtacctccagcaatgttactagacatttttctgcccatagc
tgcacttgaatcccgggtaataaatccctgctcaactagcgtgctgagca
tttgctgagaatattctgtatagcatgggatctttgcaaactgttaaagc
acacttcttaccttgcttcaaaactgactctgtctcccccagatcactac
tttctctctctctctctctctctccctctctctctctcttgacttctaag
acaccggctagttagctcgtaattgctttgtggaggagcctgaagatata
gttatgtgaggtcttttaattaagcctgtcaaatataccatcccctaaca
aaaggttttccaacattagctcagttgtattttagattggataagccctg
gtttgagggtggccctgacgtttgtattagaagatataccacagcttcac
aggctggcgcaggagatgccagttgtgataacttgaaaacatttctagac
aatgacaaatattcacagtagggacaaaacaccccagaaaagaaccatgg
gttggctcaaggggtagaaaaatacaatcttctcttcatgtcctcttaag
taatagacatttgaccgaatcaacttaaattaactcaaggtcaccaggga
tagcttctatgttagttagtgtgaaagagaagacaaaaccctcacgcttt
aagcaaaggaaaatataaattatcttgttgacgtagcaagtctatattag
taaatgttgggctcaccatctccaggtgaagctttagccatgtctgtcct
gagaaaggcagctactgtttagccccattaatttcgcattgagcatttat
taagtaaaggaacattatagcgcaactctggctacatggcaaacaagaca
gacaagatatccatttctcaagagaccttggaatttgcaacgtttgggac
ctgtaagttatacaaggagatgagtacgccaacctatagtactggttgta
aatcgtgggttttcatttctccaccgaaagtacctcttgcaaattatgga
ttttttattccattattttctaattctttcaagcctgggga
gaattctaaactccgttcttgagtgtcagtgagataagcatttaccgctg
ggtgagtccccaagaaggagtgactgctatccataagtcattactccaca
ctcagctctcagggtgcacgatcccttccttgtcttatgcgcatgatccc
cctaccaaaaggcaaccgtgcagcaatcagcacagcttcagcaacacaag
gtccgctgcggggaccgcctccttacctttatctaacttgttgtagatgt
gctttggcagttctggggaacactcgacatttggagggtagacatacatt
gctctgctatgaggcgagttgagatcccgcaggtccacagcttctttgca
aacattcagaatgttccttcgaaagtcttggacttctggatctttaacca
tatcaaattcacacactggcatgccaataacaaaacctaaaaaaataaga
tgtttataaacaatgtagggcagaagtggtttttacaaacggagaactac
acacatttagaaaagcacaaaagaaagtttctatgaattaaaaaaatgtt
ttgataaatccatttttaagaggacagccattttaaagaatttttgtagt
tggctctattgccccattgaggggaaaagtgtaaaattattctgactcac
aacattgtaactttctggaagtataagatatagttactctgccgaggggt
gggggtggaaggatttctgagtaataaaacttggctaataagaaatctaa
gtcctcctactaattgtttcccttaagtaaaaccctacaggatatcaaag
cgttacgaagttctattgctcagtagttaaaaaaccataaaaacaaaaac
cctactttataattttttaaatagaatctactcaagattacaaaggtaat
attcaatagtatccttaagatcaaaataaagaaggaggcatccatagttt
aatttgcaggtttaggcaatgactgtgtccattacctggaaaatttaatt
catacccaatttccctcattgaagatcttttcttcacggttgaccttact
ggtttcaataactttaaaatggttgaaatagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_122884090_122884925
seq2: B6Ng01-302E05.b_279_1133

seq1  TCTTGACTTCTAAGACACCGGCTAGTTAGCTCGTAATTGCTTTGTGGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGACTTCTAAGACACCGGCTAGTTAGCTCGTAATTGCTTTGTGGAGG  50

seq1  AGCCTGAAGATATAGTTATGTGAGGTCTTTTAATTAAGCCTGTCAAATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGAAGATATAGTTATGTGAGGTCTTTTAATTAAGCCTGTCAAATAT  100

seq1  ACCATCCCCTAACAAAAGGTTTTCCAACATTAGCTCAGTTGTATTTTAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCCCCTAACAAAAGGTTTTCCAACATTAGCTCAGTTGTATTTTAGA  150

seq1  TTGGATAAGCCCTGGTTTGAGGGTGGCCCTGACGTTTGTATTAGAAGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATAAGCCCTGGTTTGAGGGTGGCCCTGACGTTTGTATTAGAAGATA  200

seq1  TACCACAGCTTCACAGGCTGGCGCAGGAGATGCCAGTTGTGATAACTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACAGCTTCACAGGCTGGCGCAGGAGATGCCAGTTGTGATAACTTGA  250

seq1  AAACATTTCTAGACAATGACAAATATTCACAGTAGGGACAAAACACCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTTCTAGACAATGACAAATATTCACAGTAGGGACAAAACACCCCA  300

seq1  GAAAAGAACCATGGGTTGGCTCAAGGGGTAGAAAAATACAATCTTCTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAACCATGGGTTGGCTCAAGGGGTAGAAAAATACAATCTTCTCTT  350

seq1  CATGTCCTCTTAAGTAATAGACATTTGACCGAATCAACTTAAATTAACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCCTCTTAAGTAATAGACATTTGACCGAATCAACTTAAATTAACTC  400

seq1  AAGGTCACCAGGGATAGCTTCTATGTTAGTTAGTGTGAAAGAGAAGACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCACCAGGGATAGCTTCTATGTTAGTTAGTGTGAAAGAGAAGACAA  450

seq1  AACCCTCACGCTTTAAGCAAAGGAAAATATAAATTATCTTGTTGACGTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTCACGCTTTAAGCAAAGGAAAATATAAATTATCTTGTTGACGTAG  500

seq1  CAAGTCTATATTAGTAAATGTTGGGCTCACCATCTCCAGGTGAAGCTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCTATATTAGTAAATGTTGGGCTCACCATCTCCAGGTGAAGCTTTA  550

seq1  GCCATGTCTGTCCTGAGAAAGGCAGCTACTGTTTAGCCCCATTAA-TTCG  599
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GCCATGTCTGTCCTGAGAAAGGCAGCTACTGTTTAGCCCCATTAATTTCG  600

seq1  CATTGAGCATTTATTAAGT-AAGGAACATTATAGCGCAACTCTGGCTACA  648
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CATTGAGCATTTATTAAGTAAAGGAACATTATAGCGCAACTCTGGCTACA  650

seq1  TGGCAAACAAGACAGACAAGATATCCA-TTCTCAAGAGACCTTGG-ATTT  696
      ||||||||||||||||||||||||||| ||||||||||||||||| ||||
seq2  TGGCAAACAAGACAGACAAGATATCCATTTCTCAAGAGACCTTGGAATTT  700

seq1  GC-ACGTTTGGGACCTGTAAGTAATACAAGGAGATGAGTACGCCA--CCA  743
      || ||||||||||||||||||| ||||||||||||||||||||||  | |
seq2  GCAACGTTTGGGACCTGTAAGTTATACAAGGAGATGAGTACGCCAACCTA  750

seq1  AAGTACT-GTTGT-AATCGT-GGTTTTCATTTCTCCACC-AAAGTA-CTC  788
       |||||| ||||| |||||| |||||||||||||||||| |||||| |||
seq2  TAGTACTGGTTGTAAATCGTGGGTTTTCATTTCTCCACCGAAAGTACCTC  800

seq1  TTGC-AATTATG--ATTTTTATTCTA-TATTTTCTA--TCTTTC-AGGCT  831
      |||| |||||||   ||||||||| | |||||||||  |||||| || ||
seq2  TTGCAAATTATGGATTTTTTATTCCATTATTTTCTAATTCTTTCAAGCCT  850

seq1  GGGGA  836
      |||||
seq2  GGGGA  855

seq1: chr3_32335405_32336475
seq2: B6Ng01-302E05.g_67_1149 (reverse)

seq1  GGCTTTTTCAACCCTTTTTAAAAGTTATTG-AACCAGTA--GGCAACCGT  47
      |||| |||||||| ||||  |||||||||| ||||||||  | |||||||
seq2  GGCTATTTCAACCATTTT--AAAGTTATTGAAACCAGTAAGGTCAACCGT  48

seq1  GAAGAAAAGATCCTCAAT-CGAGAAATT-GGTATGA--TATAATTTTCAG  93
      |||||||||||| |||||  | |||||| |||||||  || | ||| |||
seq2  GAAGAAAAGATCTTCAATGAGGGAAATTGGGTATGAATTAAATTTTCCAG  98

seq1  CTAATTGACACTGTCATTG-CTAAA-CTGCAAAT--AACTAT-GATGCCT  138
       |||| ||||| ||||||| ||||| ||||||||  |||||| |||||||
seq2  GTAATGGACACAGTCATTGCCTAAACCTGCAAATTAAACTATGGATGCCT  148

seq1  CC-TCTTTATTTTATTCTTAA-GATACT-TTGAATTATTACCTTTGTAAT  185
      || ||||||||||  |||||| |||||| ||||| |||||||||||||||
seq2  CCTTCTTTATTTTGATCTTAAGGATACTATTGAA-TATTACCTTTGTAAT  197

seq1  CTTTGAGTAGATTTCTATTTAAAAA--TATAAAGTAGGGTTTTTGTTTTT  233
      | ||||||||| |||||||||||||  |||||||||||||||||||||||
seq2  C-TTGAGTAGA-TTCTATTTAAAAAATTATAAAGTAGGGTTTTTGTTTTT  245

seq1  ATGGTTTTTT-ACTACTGAGCTATAGAACTTCGTAACGCTTTGATATCCT  282
      |||||||||| |||||||||| ||||||||||||||||||||||||||||
seq2  ATGGTTTTTTAACTACTGAGCAATAGAACTTCGTAACGCTTTGATATCCT  295

seq1  GTAGGGTTTTACTTAAGGGAAACAATTAGTAGGAGGACTTAGATTTCTTA  332
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGTTTTACTTAAGGGAAACAATTAGTAGGAGGACTTAGATTTCTTA  345

seq1  TTAGCCAAGTTTTATTACTCAGAAAAAGTTGATAAAGGTCCTATCATAAT  382
      |||||||||||||||||||||||||   ||         ||  ||   | 
seq2  TTAGCCAAGTTTTATTACTCAGAAATCCTTCCACCCCCACCCCTCGGCAG  395

seq1  ATTAATGGATATATGGACAATGCATATAATTAAAATGCT-TGAGGCCAAC  431
      | |||   |||| |      | || | | ||| |||| | |||| |  | 
seq2  AGTAA-CTATATCTTATACTTCCAGAAAGTTACAATGTTGTGAGTCAGAA  444

seq1  TCCTTTT-TTCTTTTCTTTTTTTCTTTTGGTTTTTCAAG------ACAGG  474
      |  ||||   ||||||      ||  | ||    |  ||      |||  
seq2  TAATTTTACACTTTTC---CCCTCAATGGGGCAATAGAGCCAACTACAAA  491

seq1  GTTTCTCTGTGTAGCCTTGGCTGTCCTCTTAAAAATGGATTTATCAAAAC  524
        ||||     |     |||||||||||||||||||||||||||||||||
seq2  AATTCT-----TTAAAATGGCTGTCCTCTTAAAAATGGATTTATCAAAAC  536

seq1  ATTTTTTTAATTCATAGAAACTTTCTTTTGTGCTTTTCTAAATGTGTGTA  574
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTAATTCATAGAAACTTTCTTTTGTGCTTTTCTAAATGTGTGTA  586

seq1  GTTCTCCGTTTGTAAAAACCACTTCTGCCCTACATTGTTTATAAACATCC  624
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GTTCTCCGTTTGTAAAAACCACTTCTGCCCTACATTGTTTATAAACATCT  636

seq1  TATTTTTTTAGGTTTTGTTATTGGCATGCCAGTGTGTGAATTTGATATGG  674
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTTAGGTTTTGTTATTGGCATGCCAGTGTGTGAATTTGATATGG  686

seq1  TTAAAGATCCAGAAGTCCAAGACTTTCGAAGGAACATTCTGAATGTTTGC  724
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGATCCAGAAGTCCAAGACTTTCGAAGGAACATTCTGAATGTTTGC  736

seq1  AAAGAAGCTGTGGACCTGCGGGATCTCAACTCGCCTCATAGCAGAGCAAT  774
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGCTGTGGACCTGCGGGATCTCAACTCGCCTCATAGCAGAGCAAT  786

seq1  GTATGTCTACCCTCCAAATGTCGAGTCTTCCCCAGAACTGCCAAAGCACA  824
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GTATGTCTACCCTCCAAATGTCGAGTGTTCCCCAGAACTGCCAAAGCACA  836

seq1  TCTACAACAAGTTAGATAAAGGTAAGGAGGCGGTCCCCGCAGCGGACCTT  874
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAACAAGTTAGATAAAGGTAAGGAGGCGGTCCCCGCAGCGGACCTT  886

seq1  GTGTTGCTGTAGCTGTGCTGATTGCTGCACGGTTGCCTTTTGGTAGCTGG  924
      ||||||||| ||||||||||||||||||||||||||||||||||||  ||
seq2  GTGTTGCTGAAGCTGTGCTGATTGCTGCACGGTTGCCTTTTGGTAGGGGG  936

seq1  ATCATGCGCCTAAGACAAGGAAGGGCTCCTGCACCCTGAGAGCTGAGTGT  974
      ||||||||| ||||||||||||||| || |||||||||||||||||||||
seq2  ATCATGCGCATAAGACAAGGAAGGGATCGTGCACCCTGAGAGCTGAGTGT  986

seq1  GGAGTAATGACTTCTGGATAGCAGTCACTCCTTCTTACTGACTCACCCCT  1024
      ||||||||||||| ||||||||||||||||||||||   |||||||||  
seq2  GGAGTAATGACTTATGGATAGCAGTCACTCCTTCTTGGGGACTCACCCAG  1036

seq1  TGGTAAATGCTTATCTCACTGACACTCAAGAACTGAGTTTAGAATTC  1071
       |||||||||||||||||||||||||||||||| |||||||||||||
seq2  CGGTAAATGCTTATCTCACTGACACTCAAGAACGGAGTTTAGAATTC  1083