BAC Information

Click to search

BAC

Clone NameB6Ng01-302F08
Chromosome3 (Build37)
Map Location 88,499,659 - 88,631,812
singlet/doubletdoublet
Overlap gene2810403A07Rik, Rit1, Syt11
Upstream geneArhgef11, 3110045G13Rik, Ntrk1, Insrr, Sh2d2a, Prcc, Hdgf, Mrpl24, BC023814, Isg20l2, Crabp2, LOC100042242, Nes, Bcan, Hapln2, Gpatc4, Apoa1bp, Ttc24, Iqgap3, Mef2d, AI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2, Rxfp4
Downstream gene5830417I10Rik, Msto1, Dap3, Ash1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-302F08.bB6Ng01-302F08.g
ACCGA096407GA096408
length1,108854
definitionB6Ng01-302F08.b B6Ng01-302F08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,499,659 - 88,500,768)(88,630,970 - 88,631,812)
sequence
gaattcaaatcccagcaaccacaaggtggcatacaaccatccacaatgag
atctgatgtcctcttctggggtgtctgaggacagctacagtgtacttaca
taaaataaataaataaatctttaaaaaaaaaaaatctgagatccacttga
cttctctagagttgtggtaaaagcatgtgccaccacactggccttggcca
cttaggttttttgttttggcctacctgcctgtgtttggatggtcttggcc
aattaacaatcaagaaaatgtcttatggacacacttataagccagtctga
tagaggcagttcttagaagtgaaatttcctcttgccagataagtccagtt
aacaatattagcacttgccgggcggtggtggcgcacgcctttaatcccag
cactccggaggcagaggcaggcggttttctgagttcgaggccagcctgtt
ctacagagtgagttccaggacagacagggctatacagagaaactgtcttg
aaaaaaaacaaaaaaggaaaaagaaaaaaaaattagcacttatgagtcta
cccttggccaacgtggcatagaagataccactgttagacctcctttggtt
gagattatagagccaacttaggctttatagtgaatttcagaatagctgag
ctatagcaataccatgtctccaaagcaaatcttggagattatggtagaaa
ttttcaaggatccatgtggaagtgtcctaagtgtgtagagggttttgcta
ctttgtagaataatttttttacaagattatttcacattgtttttctctta
ctaatcaaaatactctgttcccttacagatgcattatgttcaagataaac
tattgtgggtctagaacatgcggtgcccacttttaatgttaaagagaaag
tagaaggtccaggctgctcttatttgcaacacattcaaattgaaactggg
tgccaaagtctttctacgagggaaaggctcagctgcattgagccagcgtc
aggcgagaggctttgaacccatgttattatttatatcagtatgctaaagg
cagaggtacatttgaatctgtccttagttatatagcctgggaatagttca
tgaaaaaa
gaattcaccatctgctgtttctagttcaagttcttggcttttggggacag
agggaacaatactgaaatggatgcgaaggtagggcagaggtgggatggca
gtgagcaagtaaggaagcctccttggtcctccagaaccatgacactgcct
gtcttctctctacctatccttgttgtctctgtaacagtcgatacattgta
cgtagcagtaggttccctcagtgacacaacaccatagagccaaagaactg
tgcaaacagatgtctcccagtcttggcttttagacttcattttcaaatta
cgctaaaaaaaaatatctgtcttgggccagcaaggtagctaagggggggt
ggggggcgcgcttgctgccaagcctgattgatgagctatgttccagctat
gagacttccaccagctatgcctgggggaaggagagaatggactccagaac
cttatcctctgccttcctctcccccctcgccacccccgagtgagtgtacg
tgccgtcgaacacattgcacacacacacttatctacgaggtgtggtggct
cacatctgtaatcccagcacttgggagactgagacctaatgtttcccttg
gtagttcccttctgccctcttctcagtcagtcagtcagtcagtcagtcaa
atgttcaccttcactaaacaatagcaaacaatctgcaagaaagctcctga
ctgggcagtggagagccttgtcttcatattggagccattctgattggcca
cacagttgtttacacacatactttattttagctttttgttaaatgtcaga
aactcaggttttgctgaacaagccaggatggggatttcttgcccttccta
actt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_88499659_88500768
seq2: B6Ng01-302F08.b_45_1152

seq1  GAATTCAAATCCCAGCAACCACAAGGTGGCATACAACCATCCACAATGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATCCCAGCAACCACAAGGTGGCATACAACCATCCACAATGAG  50

seq1  ATCTGATGTCCTCTTCTGGGGTGTCTGAGGACAGCTACAGTGTACTTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGATGTCCTCTTCTGGGGTGTCTGAGGACAGCTACAGTGTACTTACA  100

seq1  TAAAATAAATAAATAAATCTTTAAAAAAAAAAAATCTGAGATCCACTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAAATAAATAAATCTTTAAAAAAAAAAAATCTGAGATCCACTTGA  150

seq1  CTTCTCTAGAGTTGTGGTAAAAGCATGTGCCACCACACTGGCCTTGGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTAGAGTTGTGGTAAAAGCATGTGCCACCACACTGGCCTTGGCCA  200

seq1  CTTAGGTTTTTTGTTTTGGCCTACCTGCCTGTGTTTGGATGGTCTTGGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGTTTTTTGTTTTGGCCTACCTGCCTGTGTTTGGATGGTCTTGGCC  250

seq1  AATTAACAATCAAGAAAATGTCTTATGGACACACTTATAAGCCAGTCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAACAATCAAGAAAATGTCTTATGGACACACTTATAAGCCAGTCTGA  300

seq1  TAGAGGCAGTTCTTAGAAGTGAAATTTCCTCTTGCCAGATAAGTCCAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGCAGTTCTTAGAAGTGAAATTTCCTCTTGCCAGATAAGTCCAGTT  350

seq1  AACAATATTAGCACTTGCCGGGCGGTGGTGGCGCACGCCTTTAATCCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATATTAGCACTTGCCGGGCGGTGGTGGCGCACGCCTTTAATCCCAG  400

seq1  CACTCCGGAGGCAGAGGCAGGCGGTTTTCTGAGTTCGAGGCCAGCCTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCGGAGGCAGAGGCAGGCGGTTTTCTGAGTTCGAGGCCAGCCTGTT  450

seq1  CTACAGAGTGAGTTCCAGGACAGACAGGGCTATACAGAGAAACTGTCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGAGTGAGTTCCAGGACAGACAGGGCTATACAGAGAAACTGTCTTG  500

seq1  AAAAAAAACAAAAAAGGAAAAAGAAAAAAAAATTAGCACTTATGAGTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAACAAAAAAGGAAAAAGAAAAAAAAATTAGCACTTATGAGTCTA  550

seq1  CCCTTGGCCAACGTGGCATAGAAGATACCACTGTTAGACCTCCTTTGGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGGCCAACGTGGCATAGAAGATACCACTGTTAGACCTCCTTTGGTT  600

seq1  GAGATTATAGAGCCAACTTAGGCTTTATAGTGAATTTCAGAATAGCTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTATAGAGCCAACTTAGGCTTTATAGTGAATTTCAGAATAGCTGAG  650

seq1  CTATAGCAATACCATGTCTCCAAAGCAAATCTTGGAGATTATGGTAGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGCAATACCATGTCTCCAAAGCAAATCTTGGAGATTATGGTAGAAA  700

seq1  TTTTCAAGGATCCATGTGGAAGTGTCCTAAGTGTGTAGAGGGTTTTGCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAGGATCCATGTGGAAGTGTCCTAAGTGTGTAGAGGGTTTTGCTA  750

seq1  CTTTGTAGAATAATTTTTTTACAAGATTATTTCACATTGTTTTTCTCTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTAGAATAATTTTTTTACAAGATTATTTCACATTGTTTTTCTCTTA  800

seq1  CTAATCAAAATACTCTGTTCCCTTACAGATGCATTATGTTCAAGATAAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCAAAATACTCTGTTCCCTTACAGATGCATTATGTTCAAGATAAAC  850

seq1  TATTTGTGGGTCTAGAACATGCGGTGCCCACTTTTAATGTTAAAGAGAAA  900
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TA-TTGTGGGTCTAGAACATGCGGTGCCCACTTTTAATGTTAAAGAGAAA  899

seq1  GTAGAAGGTCCAGGCTGCTCTTATTTGCAACACATTCAAATTGAAACT-G  949
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GTAGAAGGTCCAGGCTGCTCTTATTTGCAACACATTCAAATTGAAACTGG  949

seq1  GTGCCAAAGTCTTTCTACGAGGGAAAGGCTCAGGCTGCATTGAGCCAGCG  999
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GTGCCAAAGTCTTTCTACGAGGGAAAGGCTCA-GCTGCATTGAGCCAGCG  998

seq1  TCAGGCCGAGAGGCTTTTGAACCCATGT--ATATTTATATCAGGTATGGC  1047
      ||||| |||||||| |||||||||||||   ||||||||||| |||| ||
seq2  TCAGG-CGAGAGGC-TTTGAACCCATGTTATTATTTATATCA-GTAT-GC  1044

seq1  TAAAAGCAGAGG-ACATTGAAATCTGT-CTTAGTAATTATAGGCT-GGAA  1094
      |||| ||||||| |||||  ||||||| |||||| | ||||| || ||||
seq2  TAAAGGCAGAGGTACATTTGAATCTGTCCTTAGTTA-TATAGCCTGGGAA  1093

seq1  TAGTTCATTGAAAAAA  1110
      ||||||| ||||||||
seq2  TAGTTCA-TGAAAAAA  1108

seq1: chr3_88630970_88631812
seq2: B6Ng01-302F08.g_68_921 (reverse)

seq1  AAGTTAGGA--GGCAAGAA--TCCCATCCT-GCTTGTTC-GC-AAACCTG  43
      |||||||||  ||||||||   |||||||| |||||||| || |||||||
seq2  AAGTTAGGAAGGGCAAGAAATCCCCATCCTGGCTTGTTCAGCAAAACCTG  50

seq1  AGTTTCTGACATTTAAC-AAAAGCTAAA--TAAGTCTGTGTGTAAACAAC  90
      ||||||||||||||||| ||||||||||   |||| ||||||||||||||
seq2  AGTTTCTGACATTTAACAAAAAGCTAAAATAAAGTATGTGTGTAAACAAC  100

seq1  TGTGTGGCCAATCAGAATGGCTCCAATATGAAGACAAGGCTCTCCACTGC  140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGCCAATCAGAATGGCTCCAATATGAAGACAAGGCTCTCCACTGC  150

seq1  CCAGTCAGGAGCTTTCTTGCAGATTGTTTGCTATTGTTTAGTGAAGGTGA  190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCAGGAGCTTTCTTGCAGATTGTTTGCTATTGTTTAGTGAAGGTGA  200

seq1  ACA-TTGACTGACTGACTGACTGACTGACTGAGAAGAGGGCAGAAGGGAA  239
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGACTGACTGACTGACTGACTGACTGAGAAGAGGGCAGAAGGGAA  250

seq1  CTACCAAGGGAAACATTAGGTCTCAGTCTCCCAAGTGCTGGGATTACAGA  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAAGGGAAACATTAGGTCTCAGTCTCCCAAGTGCTGGGATTACAGA  300

seq1  TGTGAGCCACCACACCTCGTAGATAAGTGTGTGTGTGCAATGTGTTCGAC  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCCACCACACCTCGTAGATAAGTGTGTGTGTGCAATGTGTTCGAC  350

seq1  GGCACGTACACTCACTCGGGGGTGGCGAGGGGGGAGAGGAAGGCAGAGGA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACGTACACTCACTCGGGGGTGGCGAGGGGGGAGAGGAAGGCAGAGGA  400

seq1  TAAGGTTCTGGAGTCCATTCTCTCCTTCCCCCAGGCATAGCTGGTGGAAG  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTTCTGGAGTCCATTCTCTCCTTCCCCCAGGCATAGCTGGTGGAAG  450

seq1  TCTCATAGCTGGAACATAGCTCATCAATCAGGCTTGGCAGCAAGCGCGCC  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATAGCTGGAACATAGCTCATCAATCAGGCTTGGCAGCAAGCGCGCC  500

seq1  CCCCACCCCCCCTTAGCTACCTTGCTGGCCCAAGACAGATATTTTTTTTT  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCCCCCCTTAGCTACCTTGCTGGCCCAAGACAGATATTTTTTTTT  550

seq1  AGCGTAATTTGAAAATGAAGTCTAAAAGCCAAGACTGGGAGACATCTGTT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTAATTTGAAAATGAAGTCTAAAAGCCAAGACTGGGAGACATCTGTT  600

seq1  TGCACAGTTCTTTGGCTCTATGGTGTTGTGTCACTGAGGGAACCTACTGC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAGTTCTTTGGCTCTATGGTGTTGTGTCACTGAGGGAACCTACTGC  650

seq1  TACGTACAATGTATCGACTGTTACAGAGACAACAAGGATAGGTAGAGAGA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTACAATGTATCGACTGTTACAGAGACAACAAGGATAGGTAGAGAGA  700

seq1  AGACAGGCAGTGTCATGGTTCTGGAGGACCAAGGAGGCTTCCTTACTTGC  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGCAGTGTCATGGTTCTGGAGGACCAAGGAGGCTTCCTTACTTGC  750

seq1  TCACTGCCATCCCACCTCTGCCCTACCTTCGCATCCATTTCAGTATTGTT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGCCATCCCACCTCTGCCCTACCTTCGCATCCATTTCAGTATTGTT  800

seq1  CCCTCTGTCCCCAAAAGCCAAGAACTTGAACTAGAAACAGCAGATGGTGA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGTCCCCAAAAGCCAAGAACTTGAACTAGAAACAGCAGATGGTGA  850

seq1  ATTC  843
      ||||
seq2  ATTC  854