BAC Information

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BAC

Clone NameB6Ng01-302F21
Chromosome3 (Build37)
Map Location 97,823,791 - 97,824,771
singlet/doubletsinglet
Overlap geneNotch2
Upstream geneGja5, Acp6, Bcl9, Olfr1402, Chd1l, Fmo5, Prkab2, Pde4dip, Sec22b, EG433632, LOC100042975
Downstream geneAdam30, LOC622561, Reg4, Hmgcs2, Phgdh, Zfp697, LOC100043461, Hsd3b4, LOC100043456, EG545555, LOC676433, Hsd3b5, LOC668543, Hsd3b2, Hsd3b3, Hsd3b6, LOC545556, Hsd3b1, Hao3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-302F21.bB6Ng01-302F21.g
ACCGA096433GA096434
length849999
definitionB6Ng01-302F21.b B6Ng01-302F21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccttcttcctgggtcaacacagtaactacagtgctctttgcagaa
aacctgcaccttaaccatgcaaacagaatcactaacatgtcctactcccc
aactttcagaactgaaaacactcaaaatcacttttatccagtattagagt
gtccttggacaaaagcggccaatcctgagatgcaggattccagacaggaa
atgacaccagtcaccccaccatcctggcaagcatctgtgggcctgttcca
caagggccctgttttcaggtgtttgggacagtgatcaataaacaaaaaca
agggtcctgaccttcagtcgatctgggggacaactggcaaaaaccaacag
gtataatggaggaaatgacagggtaccgatcatacagtaggactctaagt
gtcacagaaaaagaaaacaaagactgaggccagggccagtaattatgggg
atggaggggatggctataattttaaatagagtggtcagagtacgattaga
aatgcaaagacccagatatagctgtctcttgtgagactatgccggggcct
agcaaacacagaagtggatgctcacagtcagctattggatggatcacagg
gtccccaatggagaagctagagaaagtacccaaggagctaaagggatctg
caaccctgtaggtggaacaacattatgaactaaccagtaccccggagctc
ttgactctagctgcatatgtatcaaaagatggcctagtcagccatcactg
gaaagagaggcccatttggacttgcaaactttatatgccccagtacagga
gaacgccagggccaaaaaagtcgggagtgggttggggtagtggtgagta
gaattcagggtcactgctcaattgcctgcaggactctcagggactgggct
ccagggcattagaagagggacccaggccctcaatgcctggcttgaagacc
aaagtgccagctcagccatcaaattggcctgcagttcaaggggtccaggc
acatttgcgtagaatcctctgaagactgtgggctcttagagtgatgctat
gttaaggccttgggtgtgtcgtcaggcttaattgtttcccttggcatctt
ggggcaggcagtgcagggaaatatagtctccaggtatgtgggaattgtac
ccagagtggaagttaggctcctgcccccaggactgatagcatcactgaga
tgaggcagagaggtacacggtgtgtagtttgaaagccacctagccattta
ttgaactctctgaaagcagtttcctgcagtctgggtaactaagagcagtg
gggttcctggggagtacccaggagagaagagcagccccagctccccccac
ccaggggggcttgtctgctattttgcacagtccgctattttcttttctct
gttgtaacataggaaaagaataatcaacttgccttggtgagaagaagaca
aagacccccgtctggtggcgggtgtgagtataacattggcagaggttgtg
gtggctattagtggctctgtggtgagagagcactgtgtcctcagccctgc
atggcaggcttgctacaggacatatcagggtggaaactgtcttcctggga
agatcccagttctcagcggcagtggctgaaagacctcctcatcacagcat
ggggtgtgtgtggtgtggacacacccagagtcgctgctgctggtggcatt
gattaatcaacgctgacatagctcttcaccccttgctttacttgtcttgg
caaaccccttgttcctgcccagcttccttcagttacttattgttggtacc
aaggaggagattggagccaggttctggttgggttgcgggggccggtcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_97823791_97824771
seq2: B6Ng01-302F21.g_67_1063

seq1  GAATTCAGGGTCACTGCTCAATTGCCTGCAGGACTCTCAGGGACTGGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGTCACTGCTCAATTGCCTGCAGGACTCTCAGGGACTGGGCT  50

seq1  CCAGGGCATTAGAAGAGGGACCCAGGCCCTCAATGCCTGGCTTGAAGACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCATTAGAAGAGGGACCCAGGCCCTCAATGCCTGGCTTGAAGACC  100

seq1  AAAGTGCCAGCTCAGCCATCAAATTGGCCTGCAGTTCAAGGGGTCCAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGCCAGCTCAGCCATCAAATTGGCCTGCAGTTCAAGGGGTCCAGGC  150

seq1  ACATTTGCGTAGAATCCTCTGAAGACTGTGGGCTCTTAGAGTGATGCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGCGTAGAATCCTCTGAAGACTGTGGGCTCTTAGAGTGATGCTAT  200

seq1  GTTAAGGCCTTGGGTGTGTCGTCAGGCTTAATTGTTTCCCTTGGCATCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGGCCTTGGGTGTGTCGTCAGGCTTAATTGTTTCCCTTGGCATCTT  250

seq1  GGGGCAGGCAGTGCAGGGAAATATAGTCTCCAGGTATGTGGGAATTGTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAGGCAGTGCAGGGAAATATAGTCTCCAGGTATGTGGGAATTGTAC  300

seq1  CCAGAGTGGAAGTTAGGCTCCTGCCCCCAGGACTGATAGCATCACTGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGTGGAAGTTAGGCTCCTGCCCCCAGGACTGATAGCATCACTGAGA  350

seq1  TGAGGCAGAGAGGTACACGGTGTGTAGTTTGAAAGCCACCTAGCCATTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCAGAGAGGTACACGGTGTGTAGTTTGAAAGCCACCTAGCCATTTA  400

seq1  TTGAACTCTCTGAAAGCAGTTTCCTGCAGTCTGGGTAACTAAGAGCAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTCTCTGAAAGCAGTTTCCTGCAGTCTGGGTAACTAAGAGCAGTG  450

seq1  GGGTTCCTGGGGAGTACCCAGGAGAGAAGAGCAGCCCCAGCTCCCCCCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCCTGGGGAGTACCCAGGAGAGAAGAGCAGCCCCAGCTCCCCCCAC  500

seq1  CCAGGGGGGCTTGTCTGCTATTTTGCACAGTCCGCTATTTTCTTTTCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGGGGCTTGTCTGCTATTTTGCACAGTCCGCTATTTTCTTTTCTCT  550

seq1  GTTGTAACATAGGAAAAGAATAATCAACTTGCCTTGGTGAGAAGAAGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTAACATAGGAAAAGAATAATCAACTTGCCTTGGTGAGAAGAAGACA  600

seq1  AAGACCCCCGTCTGGTGGCGGGTGTGAGTATAACATTGGCAGAGGTTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCCCCGTCTGGTGGCGGGTGTGAGTATAACATTGGCAGAGGTTGTG  650

seq1  GTGGCTATTAGTGGCTCTGTGGTGAGAGAGCACTGTGTCCTCAGCCCTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTATTAGTGGCTCTGTGGTGAGAGAGCACTGTGTCCTCAGCCCTGC  700

seq1  ATGGCAGGCTTGCTACAGGACATATCAGGGTGGAAACTGTCTTCCTGGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAGGCTTGCTACAGGACATATCAGGGTGGAAACTGTCTTCCTGGGA  750

seq1  AGATCCCAGTTCTCAGCGGCAGTGGCTGAAAGACCTCCTCATCACAGGCA  800
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AGATCCCAGTTCTCAGCGGCAGTGGCTGAAAGACCTCCTCATCACA-GCA  799

seq1  TGGGGTGTGTGTGGTGTGGACACACCCAGAGTCGCTGCTGCTGGTGGCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTGTGTGTGGTGTGGACACACCCAGAGTCGCTGCTGCTGGTGGCAT  849

seq1  TGATTAATCAACGCTGACATAGC-CCTCACCC--TGCTTTACTTGTCTTG  897
      ||||||||||||||||||||||| | ||||||  ||||||||||||||||
seq2  TGATTAATCAACGCTGACATAGCTCTTCACCCCTTGCTTTACTTGTCTTG  899

seq1  GCAAAACCC-TGTT-CTG-CCAGCT--CCTCAG-TACTTAT--GTGGTAC  939
      ||||| ||| |||| ||| ||||||  | |||| |||||||   ||||||
seq2  GCAAACCCCTTGTTCCTGCCCAGCTTCCTTCAGTTACTTATTGTTGGTAC  949

seq1  C-AGGA-GAGA-TGGAGCAAGGTCCTGGT--GGTTGCGGGGG-CGGTC  981
      | |||| |||| |||||| |||| |||||  ||||||||||| |||||
seq2  CAAGGAGGAGATTGGAGCCAGGTTCTGGTTGGGTTGCGGGGGCCGGTC  997