BAC Information

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BAC

Clone NameB6Ng01-302O13
Chromosome3 (Build37)
Map Location 94,687,988 - 94,689,108
singlet/doubletsinglet
Overlap genePsmb4
Upstream geneLOC668344, EG668346, Tdpoz5, EG668353, EG668356, LOC668359, LOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz
Downstream geneSelenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-302O13.bB6Ng01-302O13.g
ACCGA096838GA096839
length1,1751,137
definitionB6Ng01-302O13.b B6Ng01-302O13.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctttccaagacttttatcatgaatgggtgttggatcttg
tgaaatgctttttctgcatctaacgagatgatcttgtggtttttctcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagtgagaattttattgaggatttttgc
atcgatattcataatagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctattttgtgaaatagtttgtgcagaactgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggcttttgttggctgggagactattaataactgcttctatttct
ttaggggatatgggactgtttagatggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagctttttgtagaaggatctgattgtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctctagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttaattctttga
atagttcttcttgtttccacttgggttgatttcacccctgagtttgatta
tttcctgccatctactcctcttgggtgaatttgcttcctttttttctaga
gcttttagatgtgttgtcaagctactagtatgtgctctctcccgtttctt
cttggaggcactcagagctatgagtttcctctttagaaatgcttccatgt
ggtccataggtttgggtacgtatggcttccatttttcattaacctctaaa
agtcttaatttctgtccttatgcttccttgacaagatacatgaaaaagag
gttgtcacatttcccacgtgaagtgtgctcatacttatgcttgctattgg
agaatcagctaatgcacagtgtagg
gaattcaatgtcaaacaaacaaagccagcacctaattcttttgaaacagt
gggtagaaaactcatccactttggtgcctgtttacatgggttagagtagg
ttgccttctgttaagccagtctaatttctccaatgttttgcccgcctgtg
tagcctctgcttcgagaagttctagagaagcagccagtgctgagtcagac
tgaggctcgggagcttgtggagcgctgcatgagagtgctgtactacagag
atgcccgttcgtataaccgggtgagaaatgggctggaaggtacaaattct
ggagccaggcatggtggcacatgcctttaatcccagtagggaaacagggg
tgggtgggactctgcatttgaggcgagcttggtttacatagtgagacgct
atcattgcacgctttgccttctttcagtttcaaattgccactgtgactga
aaagggtgtcgagatagaaggaccgctgtccgcacagaccaactgggaca
tcgctcacatgatcaggtgagcaagctacagtagggatcggtgacacagg
gaagctcttgacttttacagaatggctcttctggagggttcaagcagaaa
ctctgtgtgggtggttttggagggaacctctccaggttgggggcggggga
actctccaggtgggtggtcttggaaatggggagctccttcagaagttgat
gcctttatccgccttcattttccctaaatgtttcttctttctttagtggc
tttgaatgaaatccagttgaatgtccagagtgttgaagctttgctcttct
aaacgtgactgtagctggctcaaaggcagacttttgtaaataaatcagtc
gtttgaagtgttcgctgagttggattttgtgttttgaaacaggatttatg
tagcccaggcttgcctggaacgcagaaatctgccctcccaaaagctagag
gtaaaagcttctggcatagcctgggcaatttcagttgtttattctaacat
ggttcacattgagacctcagctaccaagtactgctttgttaccaatgtcc
cgttgctgtttctttccttggaaagagtaacccattcaagtctaaattgg
gtgtgtgacccagagctgtccttctcaattattttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_94687988_94689108
seq2: B6Ng01-302O13.g_68_1204 (reverse)

seq1  GGAAAATAATTGAGAAAGACAACCTCTGGG-CACACAC---ATTAAGACT  46
      |||||||||||||||| ||| | ||||||| |||||||   ||| |||||
seq2  GGAAAATAATTGAGAAGGAC-AGCTCTGGGTCACACACCCAATTTAGACT  49

seq1  TAAATGG----TTCTCTCCAGGAAAGGAAACAGCA--CGGACA-TGGT-A  88
      | |||||     ||| |||| | || |||||||||   ||||| |||| |
seq2  TGAATGGGTTACTCTTTCCAAGGAAAGAAACAGCAACGGGACATTGGTAA  99

seq1  CAAAGCAGTACTTGGTAGCTGAGGTCTCAATGTG-ACCATGTTAGAATAA  137
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CAAAGCAGTACTTGGTAGCTGAGGTCTCAATGTGAACCATGTTAGAATAA  149

seq1  AC-ACTG-AATTGCC--AGCTATGCCAGAAGCTTTTACCTCTAGCTTTTG  183
      || |||| |||||||   ||||||||||||||||||||||||||||||||
seq2  ACAACTGAAATTGCCCAGGCTATGCCAGAAGCTTTTACCTCTAGCTTTTG  199

seq1  GGA-GGCAGATTTCTGCGTTCCAGGCAAGCCTGGGCTACATAAATCCTGT  232
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGCAGATTTCTGCGTTCCAGGCAAGCCTGGGCTACATAAATCCTGT  249

seq1  TTCAAAACACAAAATCCAACTCAGCGAACACTTCAAACGACTGATTTATT  282
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTCAAAACACAAAATCCAACTCAGCGAACACTTCAAACGACTGATTTA-T  298

seq1  TTACAAAAGTCTGCCTTTGAGCCAGCTACAGTCACGTTTAGAAGAGCAAA  332
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAAAGTCTGCCTTTGAGCCAGCTACAGTCACGTTTAGAAGAGCAAA  348

seq1  GCTTCAACACTCTGGACATTCAACTGGATTTCATTCAAAGCCACTAAAGA  382
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAACACTCTGGACATTCAACTGGATTTCATTCAAAGCCACTAAAGA  398

seq1  AAGAAGAAACATTTAGGGAAAATGAAGGCGGATAAAGGCATCAACTTCTG  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAACATTTAGGGAAAATGAAGGCGGATAAAGGCATCAACTTCTG  448

seq1  AAGGAGCTCCCCATTTCCAAGACCACCCACCTGGAGAGTTCCCCCGCCCC  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGCTCCCCATTTCCAAGACCACCCACCTGGAGAGTTCCCCCGCCCC  498

seq1  CAACCTGGAGAGGTTCCCTCCAAAACCACCCACACAGAGTTTCTGCTTGA  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTGGAGAGGTTCCCTCCAAAACCACCCACACAGAGTTTCTGCTTGA  548

seq1  ACCCTCCAGAAGAGCCATTCTGTAAAAGTCAAGAGCTTCCCTGTGTCACC  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCCAGAAGAGCCATTCTGTAAAAGTCAAGAGCTTCCCTGTGTCACC  598

seq1  GATCCCTACTGTAGCTTGCTCACCTGATCATGTGAGCGATGTCCCAGTTG  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCTACTGTAGCTTGCTCACCTGATCATGTGAGCGATGTCCCAGTTG  648

seq1  GTCTGTGCGGACAGCGGTCCTTCTATCTCGACACCCTTTTCAGTCACAGT  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGCGGACAGCGGTCCTTCTATCTCGACACCCTTTTCAGTCACAGT  698

seq1  GGCAATTTGAAACTGAAAGAAGGCAAAGCGTGCAATGATAGCGTCTCACT  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATTTGAAACTGAAAGAAGGCAAAGCGTGCAATGATAGCGTCTCACT  748

seq1  ATGTAAACCAAGCTCGCCTCAAATGCAGAGTCCCACCCACCCCTGTTTCC  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAACCAAGCTCGCCTCAAATGCAGAGTCCCACCCACCCCTGTTTCC  798

seq1  CTACTGGGATTAAAGGCATGTGCCACCATGCCTGGCTCCAGAATTTGTAC  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGGGATTAAAGGCATGTGCCACCATGCCTGGCTCCAGAATTTGTAC  848

seq1  CTTCCAGCCCATTTCTCACCCGGTTATACGAACGGGCATCTCTGTAGTAC  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGCCCATTTCTCACCCGGTTATACGAACGGGCATCTCTGTAGTAC  898

seq1  AGCACTCTCATGCAGCGCTCCACAAGCTCCCGAGCCTCAGTCTGACTCAG  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTCTCATGCAGCGCTCCACAAGCTCCCGAGCCTCAGTCTGACTCAG  948

seq1  CACTGGCTGCTTCTCTAGAACTTCTCGAAGCAGAGGCTACACAGGCGGGC  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGCTGCTTCTCTAGAACTTCTCGAAGCAGAGGCTACACAGGCGGGC  998

seq1  AAAACATTGGAGAAATTAGACTGGCTTAACAGAAGGCAACCTACTCTAAC  1032
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATTGGAGAAATTAGACTGGCTTAACAGAAGGCAACCTACTCTAAC  1048

seq1  CCATGTAAACAGGCACCAAAGTGGATGAGTTTTCTACCCACTGTTTCAAA  1082
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTAAACAGGCACCAAAGTGGATGAGTTTTCTACCCACTGTTTCAAA  1098

seq1  AGAATTAGGTGCTGGCTTTGTTTGTTTGACATTGAATTC  1121
      |||||||||||||||||||||||||||||||||||||||
seq2  AGAATTAGGTGCTGGCTTTGTTTGTTTGACATTGAATTC  1137