BAC Information

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BAC

Clone NameB6Ng01-303E09
Chromosome3 (Build37)
Map Location 94,774,564 - 94,946,981
singlet/doubletdoublet
Overlap genePik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2
Upstream geneEG668353, EG668356, LOC668359, LOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5
Downstream geneLOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-303E09.bB6Ng01-303E09.g
ACCGA097115GA097116
length1,0891,159
definitionB6Ng01-303E09.b B6Ng01-303E09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,774,564 - 94,775,666)(94,945,841 - 94,946,981)
sequence
gaattccaggtcagtgagagaaaaacaaaccgaaaaaaacaataacaaag
cctaaagtggatggcacctgagggaacactaccaaaacttgtcctctggt
ctccacagcacatgtgtgtacataccagcaaacacatgcactggtacaca
cacacacaaaaagggtcggtggtgaagaatttaaagaatagtacaaataa
tatgcttcagagttgaatattcttgccatggttgagttatttgggaatcg
gattggaatataattccctatgcttttaatggctttatgatctgacactt
aaggataccaaggagaagccaagcagccttcctgtaagtcccacactccc
gaggctgagggaggaagagctcagatttgaggccaggctaggttacagag
tgagattctgtttttgagacagggtctctttatggaactctgcctatcct
ggaactacctatgtagaccaggctggtcttgaactcacaaagatctgcct
gcctttgctgggaggccaccatgcccagccaaactcctggtgattttttt
tgtttgtttgtttggttttagttttgttttttccaaataaaacaaaagga
ctaagacttttaaaaaaggcaaataggaatgtagaaaaattagttaaacc
tatgaatttaaaattttaaatgtattcacttttaaaaagtacactttccc
aaataagacatcagtgaaataatcacattgttttacaacttcgtaaatct
tccttatgtcccactaaattctcatatctgctctgaactcaagctgactg
ctgtatcaacatgtgtgaattttttttccctgtggtataaaacgttggat
acttagaatgcaaaggtaaatctttcccttcctataggatggcagttctc
aacctgggggtctcaacctctttggcaaacctctgtctccaaaatactta
cactgcgactcattacagtagcagaactagttatgaagtacacgaatatt
tttatagttggagttccacacatgagactattattaaaggtcaagcatta
gaagttgagaccacttctagactagtctagaattaaaaa
gaattcctggagctggagttgtgggtggtttttccaagacaagaatttta
ctatgcagccctggctggcctggagctcactctgtagaccaggctggcct
tgaactcaaagattggattgtctctgcctccagaatgctgggattaaagg
tgtagttttgcctcattggagtctaccctcatttatcaggccctttaaag
ctattaagctctgtactccagcgttttggctcgatgctgacacctgctgg
tcacgcatggctcagcagccctaaccttggcacctacctcctgcctgctc
tggctggggcagtctgtgccaatcttaccttctagggcctgaagatgctt
gtataatgctgttctactacaccactcgatgatctttcagtacttccctc
actgtctctcacattaaaatctggactctgcacggttttcagtaccacaa
aaatattaggcagcaagaaagaagcagaccttttattaggtggaggtgtg
taaatccgtccttgccacttcagagttggtgcttcctacagaattccatt
ccttttgacctttgtcttatttctaggtggctcttgggacactggacttc
ttggtgacagtgatgatgaaccggaggtggagagtagataggcggggcct
ggggtggggctagaccaaagggcctcttaggagcttctccattctgtgag
ctctcagaaacatccaaggccagactggcacccagcacacggcaggtgag
agtctggcaatgacagagggtgggtttcggggtgacactgacaggatatc
ctgaccctttcaccttcacctttctttctgtcttgtgaaactctcgcttg
tagaattcttgggtctccccctctctccccagaaccattttagtgtattt
agtggatggggcaaaggctgttctgagagtgagacctggcttggggatgg
tgggctgagtctagagctgagggaacagagatgcacatggggtaacggac
tagagatttaagaagatcttacaagtatcttcggacatgcaagtacagtt
gaacgccaagttgcaaggaatctttgctaagcttagaagattcatgaagt
tcacgtaaaggcctggtacaaaagagcgagtgacttagcctaaccttggg
aggaactgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_94774564_94775666
seq2: B6Ng01-303E09.b_44_1132

seq1  GAATTCCAGGTCAGTGAGAGAAAAACAAACCGAAAAAAACAATAACAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTCAGTGAGAGAAAAACAAACCGAAAAAAACAATAACAAAG  50

seq1  CCTAAAGTGGATGGCACCTGAGGGAACACTACCAAAACTTGTCCTCTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAGTGGATGGCACCTGAGGGAACACTACCAAAACTTGTCCTCTGGT  100

seq1  CTCCACAGCACATGTGTGTACATACCAGCAAACACATGCACTGGTACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACAGCACATGTGTGTACATACCAGCAAACACATGCACTGGTACACA  150

seq1  CACACACAAAAAGGGTCGGTGGTGAAGAATTTAAAGAATAGTACAAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACAAAAAGGGTCGGTGGTGAAGAATTTAAAGAATAGTACAAATAA  200

seq1  TATGCTTCAGAGTTGAATATTCTTGCCATGGTTGAGTTATTTGGGAATCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTTCAGAGTTGAATATTCTTGCCATGGTTGAGTTATTTGGGAATCG  250

seq1  GATTGGAATATAATTCCCTATGCTTTTAATGGCTTTATGATCTGACACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGAATATAATTCCCTATGCTTTTAATGGCTTTATGATCTGACACTT  300

seq1  AAGGATACCAAGGAGAAGCCAAGCAGCCTTCCTGTAAGTCCCACACTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATACCAAGGAGAAGCCAAGCAGCCTTCCTGTAAGTCCCACACTCCC  350

seq1  GAGGCTGAGGGAGGAAGAGCTCAGATTTGAGGCCAGGCTAGGTTACAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTGAGGGAGGAAGAGCTCAGATTTGAGGCCAGGCTAGGTTACAGAG  400

seq1  TGAGATTCTGTTTTTGAGACAGGGTCTCTTTATGGAACTCTGCCTATCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTCTGTTTTTGAGACAGGGTCTCTTTATGGAACTCTGCCTATCCT  450

seq1  GGAACTACCTATGTAGACCAGGCTGGTCTTGAACTCACAAAGATCTGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTACCTATGTAGACCAGGCTGGTCTTGAACTCACAAAGATCTGCCT  500

seq1  GCCTTTGCTGGGAGGCCACCATGCCCAGCCAAACTCCTGGTGATTTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTGCTGGGAGGCCACCATGCCCAGCCAAACTCCTGGTGATTTTTTT  550

seq1  TGTTTGTTTGTTTGGTTTTAGTTTTGTTTTTTCCAAATAAAACAAAAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTGTTTGGTTTTAGTTTTGTTTTTTCCAAATAAAACAAAAGGA  600

seq1  CTAAGACTTTTAAAAAAGGCAAATAGGAATGTAGAAAAATTAGTTAAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGACTTTTAAAAAAGGCAAATAGGAATGTAGAAAAATTAGTTAAACC  650

seq1  TATGAATTTAAAATTTTAAATGTATTCACTTTTAAAAAGTACACTTTCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATTTAAAATTTTAAATGTATTCACTTTTAAAAAGTACACTTTCCC  700

seq1  AAATAAGACATCAGTGAAATAATCACATTGTTTTACAACTTCGTAAATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGACATCAGTGAAATAATCACATTGTTTTACAACTTCGTAAATCT  750

seq1  TCCTTATGTCCCACTAAATTCTCATATCTGCTCTGAACTCAAGCTGACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTATGTCCCACTAAATTCTCATATCTGCTCTGAACTCAAGCTGACTG  800

seq1  CTGTATCAACATGTGTGAA-TTTTTTTCCCTGTGGTATAAAAACGTTGGA  849
      ||||||||||||||||||| |||||||||||||||||| |||||||||||
seq2  CTGTATCAACATGTGTGAATTTTTTTTCCCTGTGGTAT-AAAACGTTGGA  849

seq1  TACTTAGAATGCAAAGGTAAATCTTTCCCTTCCTATAGGATGGCAGTTCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAGAATGCAAAGGTAAATCTTTCCCTTCCTATAGGATGGCAGTTCT  899

seq1  CAACCTGGGGGTCTCAACCTCTTTGGCAAACCTCTGTCTCCAAAAATACT  949
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CAACCTGGGGGTCTCAACCTCTTTGGCAAACCTCTGTCTCC-AAAATACT  948

seq1  TACACTGCGACTCATTACAGTAGCAGAACTAGTTATGAAGTAACAACGAA  999
      ||||||||||||||||||||||||||||||||||||||||||   ||| |
seq2  TACACTGCGACTCATTACAGTAGCAGAACTAGTTATGAAGTA--CACG-A  995

seq1  ATAATTTTATAGTTGGAGTTCCCACAACATGAGGAACTA-TATTAAAGGG  1048
      ||| |||||||||||||||| |||| |||||||  |||| ||||||| ||
seq2  ATATTTTTATAGTTGGAGTT-CCAC-ACATGAG--ACTATTATTAAA-GG  1040

seq1  TCAAAGCATTAGGAAGGTTGAGGACCACTTCCTTAGGAGCTAGTCTAGA-  1097
      || |||||||||  | ||||| |||||||||  |||   |||||||||| 
seq2  TC-AAGCATTAG--AAGTTGA-GACCACTTC--TAG--ACTAGTCTAGAA  1082

seq1  -TAAAAA  1103
       ||||||
seq2  TTAAAAA  1089

seq1: chr3_94945841_94946981
seq2: B6Ng01-303E09.g_66_1224 (reverse)

seq1  CCAG-TCCTCCCAGGGT--AGCTATGTCACTCGCTCTTTTTGTCCCA-GC  46
      |||| |||||||| |||   |||| ||||||||||| |||||| ||| ||
seq2  CCAGTTCCTCCCAAGGTTAGGCTAAGTCACTCGCTC-TTTTGTACCAGGC  49

seq1  CTCTACGTGACCCTCATGAATC-TCT-AGCCTAGCAAAGGTTTCTTTC-A  93
      || ||||||| | ||||||||| ||| ||| |||||||| || ||| | |
seq2  CTTTACGTGAACTTCATGAATCTTCTAAGCTTAGCAAAGATTCCTTGCAA  99

seq1  CTTTGCGT--CACTGTACTTCCATGTCCGAAGATAC-TGT-AGATCT--C  137
      ||| ||||   ||||||||| ||||||||||||||| ||| ||||||   
seq2  CTTGGCGTTCAACTGTACTTGCATGTCCGAAGATACTTGTAAGATCTTCT  149

seq1  TAAATCTCTAGT-CGTTACCCCATGTGCATCTCTG-TCCCTCAGCTCTAG  185
      |||||||||||| |||||||||||||||||||||| ||||||||||||||
seq2  TAAATCTCTAGTCCGTTACCCCATGTGCATCTCTGTTCCCTCAGCTCTAG  199

seq1  ACTCAG-CCACCAT-CCCAAGCCAGGTCTCACTCTCAG-ACAGCC-TTGC  231
      |||||| ||||||| ||||||||||||||||||||||| |||||| ||||
seq2  ACTCAGCCCACCATCCCCAAGCCAGGTCTCACTCTCAGAACAGCCTTTGC  249

seq1  CCCATCCACTAAATACACTAAAATGGTTCTGGGGAGAGAGGGGGAGACCC  281
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCACTAAATACACTAAAATGGTTCTGGGGAGAGAGGGGGAGACCC  299

seq1  AAGAATTCTACAAGCGAGAGTTTCACAAGACAGAAAGAAAGGTGAAGGTG  331
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTCTACAAGCGAGAGTTTCACAAGACAGAAAGAAAGGTGAAGGTG  349

seq1  AAAGGGTCAGGATATCCTGTCAGTGTCACCCCGAAACCCACCCTCTGTCA  381
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGTCAGGATATCCTGTCAGTGTCACCCCGAAACCCACCCTCTGTCA  399

seq1  TTGCCAGACTCTCACCTGCCGTGTGCTGGGTGCCAGTCTGGCCTTGGATG  431
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAGACTCTCACCTGCCGTGTGCTGGGTGCCAGTCTGGCCTTGGATG  449

seq1  TTTCTGAGAGCTCACAGAATGGAGAAGCTCCTAAGAGGCCCTTTGGTCTA  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAGAGCTCACAGAATGGAGAAGCTCCTAAGAGGCCCTTTGGTCTA  499

seq1  GCCCCACCCCAGGCCCCGCCTATCTACTCTCCACCTCCGGTTCATCATCA  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCACCCCAGGCCCCGCCTATCTACTCTCCACCTCCGGTTCATCATCA  549

seq1  CTGTCACCAAGAAGTCCAGTGTCCCAAGAGCCACCTAGAAATAAGACAAA  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCACCAAGAAGTCCAGTGTCCCAAGAGCCACCTAGAAATAAGACAAA  599

seq1  GGTCAAAAGGAATGGAATTCTGTAGGAAGCACCAACTCTGAAGTGGCAAG  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAAAAGGAATGGAATTCTGTAGGAAGCACCAACTCTGAAGTGGCAAG  649

seq1  GACGGATTTACACACCTCCACCTAATAAAAGGTCTGCTTCTTTCTTGCTG  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGGATTTACACACCTCCACCTAATAAAAGGTCTGCTTCTTTCTTGCTG  699

seq1  CCTAATATTTTTGTGGTACTGAAAACCGTGCAGAGTCCAGATTTTAATGT  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATATTTTTGTGGTACTGAAAACCGTGCAGAGTCCAGATTTTAATGT  749

seq1  GAGAGACAGTGAGGGAAGTACTGAAAGATCATCGAGTGGTGTAGTAGAAC  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGACAGTGAGGGAAGTACTGAAAGATCATCGAGTGGTGTAGTAGAAC  799

seq1  AGCATTATACAAGCATCTTCAGGCCCTAGAAGGTAAGATTGGCACAGACT  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTATACAAGCATCTTCAGGCCCTAGAAGGTAAGATTGGCACAGACT  849

seq1  GCCCCAGCCAGAGCAGGCAGGAGGTAGGTGCCAAGGTTAGGGCTGCTGAG  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAGCCAGAGCAGGCAGGAGGTAGGTGCCAAGGTTAGGGCTGCTGAG  899

seq1  CCATGCGTGACCAGCAGGTGTCAGCATCGAGCCAAAACGCTGGAGTACAG  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCGTGACCAGCAGGTGTCAGCATCGAGCCAAAACGCTGGAGTACAG  949

seq1  AGCTTAATAGCTTTAAAGGGCCTGATAAATGAGGGTAGACTCCAATGAGG  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAATAGCTTTAAAGGGCCTGATAAATGAGGGTAGACTCCAATGAGG  999

seq1  CAAAACTACACCTTTAATCCCAGCATTCTGGAGGCAGAGACAATCCAATC  1031
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTACACCTTTAATCCCAGCATTCTGGAGGCAGAGACAATCCAATC  1049

seq1  TTTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGCTCCAGGCCAGCCAG  1081
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGCTCCAGGCCAGCCAG  1099

seq1  GGCTGCATAGTAAAATTCTTGTCTTGGAAAAACCACCCACAACTCCAGCT  1131
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCATAGTAAAATTCTTGTCTTGGAAAAACCACCCACAACTCCAGCT  1149

seq1  CCAGGAATTC  1141
      ||||||||||
seq2  CCAGGAATTC  1159