BAC Information

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BAC

Clone NameB6Ng01-303P09
Chromosome3 (Build37)
Map Location 145,306,563 - 145,473,670
singlet/doubletdoublet
Overlap geneCyr61, Ddah1
Upstream geneSh3glb1, LOC668890, Clca1, Clca2, Clca4, EG622139, AI747448, Clca6, Clca3, Clca5, Odf2l, Col24a1, 2410019A14Rik
Downstream geneLOC100040331, Bcl10, 2410004B18Rik, Syde2, Wdr63, Mcoln3, Mcoln2, Edg7, Ssx2ip, Ctbs, Spata1, Gng5, Bxdc5, LOC100040473, Dnase2b, Uox, 4930503B20Rik, Gm1652, LOC670100, Prkacb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-303P09.bB6Ng01-303P09.g
ACCGA097632GA097633
length1,1551,118
definitionB6Ng01-303P09.b B6Ng01-303P09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,472,512 - 145,473,670)(145,306,563 - 145,307,671)
sequence
gaattcacttagaggaggccacaatggctcttagtgagcctctgcaggtg
aactttgcctataagcacaggtgacaagaggtatgccggcttccactgtc
cttaccagagctgactgccatcaaactgccatccaagcacgcctcaggga
agcagtcccactgcaatcttttcagcagactccctgttggagcgtccgct
gtgtctgtagaacactctgacccagagtgagccatgcagcaaatactaac
accaactgtacctccagacagagaaaaataggagtcaactttccagacac
ttgtgggaataggagagtatgtctgcggaaacagaatccaagagtccggt
ggctttgtagactcaagtatttctttatactccatgtaatggcttttccg
ttcttgtttttttttttataacacatttctgaaccatgatttaggagggg
ggaattccctcaccctcctcctgtctgttcctcagtcatccacagagtac
ccttgaatcctagcgccacaatcaagtcactttttgctgatttttcttta
ctattttctggttttctttacttagggaaacatcctttggattcactttc
atttcattttccccagagacaaactgactctataactccctgaggacagc
ctggcagtgtaactgctccaggtaagacacgctagccaacacacaagaac
ttctacctgttagactgtaactacatacctgactgtagctacatacctga
ctgtagctacatactacctgactgtaactacatacctgactgtaactaca
tacctgactgtaactacatacctgactgtaactatatacctggctgtaac
tacataactgactgtaactacatacctttaggaagttaccaacactttcc
aatgagccaggcctggcagcaccagaggaaggcaagttcaaaggcctttc
tatgctagagtgagttgatagtgagtgtgggtaagagaatgagactgcaa
gacctgttaaagacgctaagtgagtgctgagttgtagctcagttgaatag
agtgctcgcgtagcataagcaagaactttggatctactcttgagcctagg
aaaaaaacaaacaaggcaactttccttaacgttaagtgaatgtttacgat
tctct
gaattccactgtgagcaggcaatgaagcgcttgaagtcaagagaatagga
gacatactccactgactggggtggaagcaatgggctacatgacagacatg
cagggaggatggaaaatgcctttgcagccaccgctgggaaatacagcaag
tgaggaggccaaccaacaattcaggcaagagatggtggcttaggtgtgca
tgtttgcacaaaggagaaaggggtcaattcaggagcgtttatgagcagag
tatgtgggaactgtaacactctaaaaaaaatacatttgaggatttgtgaa
tggaattgggttttgtaagattccatagacgtgaatcgttaccggtgaaa
ttatcacaaacgcctgatcttaggacacttatatcactgtgttttaaatg
tgtgctctgatttaaatcatctcttaggacagcacatttcatgaggcatg
gattccagagggtttctgtgaggggaaagtgtggacccgcactgtgaggt
gcagggacctccacggcctcaggaactaagagcatgcaggggatggcgag
ggaggttctggccacgtatttccaaaggcttcatgggagtgagaaccata
ggaagacctgggcagctctgactttacagatccatgtactttaaagcaac
agcttaggaggcagaagaagaatataccaaagaaagtataggataattgt
ctgggctttccctccctccccccaaaaaatgcctaaagtttggggctgca
gaaatggctcagaatttaaaagcccttactgctcttatagagggaggtcc
agggtttcatccttaacacccacatggctgatcacaatgggtctgtaact
ccagttccaggggactcatcacagagtgcaaaacgcagatgcgcataaaa
taaaaacaaatctttaaaaacaattcccgaaagccatctcctcatgttca
caacggttaagaagcacctaagcaagcttaaggacagaagctggccgtga
aagtagtctctgaattcttgtgtggcagtcttttctgctgagtccacctg
tcttctgccaggaacgcaagctctgctgtccggagactggtgttggttga
ttactatgctgcaatcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_145472512_145473670
seq2: B6Ng01-303P09.b_49_1203 (reverse)

seq1  AGAGAATCGT-AACATCTACTTTTAACTGGTTACAGAAAGGTGCTTTGTT  49
      |||||||||| |||||  ||  |||||  ||||  ||||| ||| ||| |
seq2  AGAGAATCGTAAACATTCAC--TTAAC--GTTAAGGAAAGTTGCCTTG-T  45

seq1  TTGTTTTTTTTCTAGCGCCAGGAGTAGAACCCAAAGTCTTGCTTATGCTA  99
      |||||||||| ||||   || ||||||| || ||  ||||||||||||||
seq2  TTGTTTTTTTCCTAGGCTCAAGAGTAGATCCAAAGTTCTTGCTTATGCTA  95

seq1  CGCGAGCACTCTAT--CACTGAGCTACAACCTCAGCACTCACTTAGCGTT  147
      ||||||||||||||   |||||||||||| |||||||||||||||||| |
seq2  CGCGAGCACTCTATTCAACTGAGCTACAA-CTCAGCACTCACTTAGCG-T  143

seq1  CTTTAACAGGGTCCTGCAGTCTCATTCTCTTACCCACACTCACTATCAAC  197
      |||||||| |||| ||||||||||||||||||||||||||||||||||||
seq2  CTTTAACA-GGTCTTGCAGTCTCATTCTCTTACCCACACTCACTATCAAC  192

seq1  TCACTCTAGCATAGAAAGGCC-TTGAACTTGCCTTCCTCTGGTGCTGCCA  246
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TCACTCTAGCATAGAAAGGCCTTTGAACTTGCCTTCCTCTGGTGCTGCCA  242

seq1  GGCCTGGCTCATTGGAAAGTGTTGGTAACTTCCTAAAGGTATGTAGTTAC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGGCTCATTGGAAAGTGTTGGTAACTTCCTAAAGGTATGTAGTTAC  292

seq1  AGTCAGTTATGTAGTTACAGCCAGGTATATAGTTACAGTCAGGTATGTAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGTTATGTAGTTACAGCCAGGTATATAGTTACAGTCAGGTATGTAG  342

seq1  TTACAGTCAGGTATGTAGTTACAGTCAGGTATGTAGTTACAGTCAGGTAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGTCAGGTATGTAGTTACAGTCAGGTATGTAGTTACAGTCAGGTAG  392

seq1  TATGTAGCTACAGTCAGGTATGTAGCTACAGTCAGGTATGTAGTTACAGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAGCTACAGTCAGGTATGTAGCTACAGTCAGGTATGTAGTTACAGT  442

seq1  CTAACAGGTAGAAGTTCTTGTGTGTTGGCTAGCGTGTCTTACCTGGAGCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAGGTAGAAGTTCTTGTGTGTTGGCTAGCGTGTCTTACCTGGAGCA  492

seq1  GTTACACTGCCAGGCTGTCCTCAGGGAGTTATAGAGTCAGTTTGTCTCTG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACACTGCCAGGCTGTCCTCAGGGAGTTATAGAGTCAGTTTGTCTCTG  542

seq1  GGGAAAATGAAATGAAAGTGAATCCAAAGGATGTTTCCCTAAGTAAAGAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAATGAAATGAAAGTGAATCCAAAGGATGTTTCCCTAAGTAAAGAA  592

seq1  AACCAGAAAATAGTAAAGAAAAATCAGCAAAAAGTGACTTGATTGTGGCG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGAAAATAGTAAAGAAAAATCAGCAAAAAGTGACTTGATTGTGGCG  642

seq1  CTAGGATTCAAGGGTACTCTGTGGATGACTGAGGAACAGACAGGAGGAGG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGATTCAAGGGTACTCTGTGGATGACTGAGGAACAGACAGGAGGAGG  692

seq1  GTGAGGGAATTCCCCCCTCCTAAATCATGGTTCAGAAATGTGTTATAAAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGGAATTCCCCCCTCCTAAATCATGGTTCAGAAATGTGTTATAAAA  742

seq1  AAAAAAACAAGAACGGAAAAGCCATTACATGGAGTATAAAGAAATACTTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACAAGAACGGAAAAGCCATTACATGGAGTATAAAGAAATACTTG  792

seq1  AGTCTACAAAGCCACCGGACTCTTGGATTCTGTTTCCGCAGACATACTCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTACAAAGCCACCGGACTCTTGGATTCTGTTTCCGCAGACATACTCT  842

seq1  CCTATTCCCACAAGTGTCTGGAAAGTTGACTCCTATTTTTCTCTGTCTGG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTCCCACAAGTGTCTGGAAAGTTGACTCCTATTTTTCTCTGTCTGG  892

seq1  AGGTACAGTTGGTGTTAGTATTTGCTGCATGGCTCACTCTGGGTCAGAGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACAGTTGGTGTTAGTATTTGCTGCATGGCTCACTCTGGGTCAGAGT  942

seq1  GTTCTACAGACACAGCGGACGCTCCAACAGGGAGTCTGCTGAAAAGATTG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTACAGACACAGCGGACGCTCCAACAGGGAGTCTGCTGAAAAGATTG  992

seq1  CAGTGGGACTGCTTCCCTGAGGCGTGCTTGGATGGCAGTTTGATGGCAGT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGGACTGCTTCCCTGAGGCGTGCTTGGATGGCAGTTTGATGGCAGT  1042

seq1  CAGCTCTGGTAAGGACAGTGGAAGCCGGCATACCTCTTGTCACCTGTGCT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTGGTAAGGACAGTGGAAGCCGGCATACCTCTTGTCACCTGTGCT  1092

seq1  TATAGGCAAAGTTCACCTGCAGAGGCTCACTAAGAGCCATTGTGGCCTCC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGCAAAGTTCACCTGCAGAGGCTCACTAAGAGCCATTGTGGCCTCC  1142

seq1  TCTAAGTGAATTC  1159
      |||||||||||||
seq2  TCTAAGTGAATTC  1155

seq1: chr3_145306563_145307671
seq2: B6Ng01-303P09.g_69_1186

seq1  GAATTCCACTGTGAGCAGGCAATGAAGCGCTTGAAGTCAAGAGAATAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTGTGAGCAGGCAATGAAGCGCTTGAAGTCAAGAGAATAGGA  50

seq1  GACATACTCCACTGACTGGGGTGGAAGCAATGGGCTACATGACAGACATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATACTCCACTGACTGGGGTGGAAGCAATGGGCTACATGACAGACATG  100

seq1  CAGGGAGGATGGAAAATGCCTTTGCAGCCACCGCTGGGAAATACAGCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAGGATGGAAAATGCCTTTGCAGCCACCGCTGGGAAATACAGCAAG  150

seq1  TGAGGAGGCCAACCAACAATTCAGGCAAGAGATGGTGGCTTAGGTGTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAGGCCAACCAACAATTCAGGCAAGAGATGGTGGCTTAGGTGTGCA  200

seq1  TGTTTGCACAAAGGAGAAAGGGGTCAATTCAGGAGCGTTTATGAGCAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGCACAAAGGAGAAAGGGGTCAATTCAGGAGCGTTTATGAGCAGAG  250

seq1  TATGTGGGAACTGTAACACTCTAAAAAAAATACATTTGAGGATTTGTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGGGAACTGTAACACTCTAAAAAAAATACATTTGAGGATTTGTGAA  300

seq1  TGGAATTGGGTTTTGTAAGATTCCATAGACGTGAATCGTTACCGGTGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTGGGTTTTGTAAGATTCCATAGACGTGAATCGTTACCGGTGAAA  350

seq1  TTATCACAAACGCCTGATCTTAGGACACTTATATCACTGTGTTTTAAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCACAAACGCCTGATCTTAGGACACTTATATCACTGTGTTTTAAATG  400

seq1  TGTGCTCTGATTTAAATCATCTCTTAGGACAGCACATTTCATGAGGCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTCTGATTTAAATCATCTCTTAGGACAGCACATTTCATGAGGCATG  450

seq1  GATTCCAGAGGGTTTCTGTGAGGGGAAAGTGTGGACCCGCACTGTGAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCAGAGGGTTTCTGTGAGGGGAAAGTGTGGACCCGCACTGTGAGGT  500

seq1  GCAGGGACCTCCACGGCCTCAGGAACTAAGAGCATGCAGGGGATGGCGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGACCTCCACGGCCTCAGGAACTAAGAGCATGCAGGGGATGGCGAG  550

seq1  GGAGGTTCTGGCCACGTATTTCCAAAGGCTTCATGGGAGTGAGAACCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTTCTGGCCACGTATTTCCAAAGGCTTCATGGGAGTGAGAACCATA  600

seq1  GGAAGACCTGGGCAGCTCTGACTTTACAGATCCATGTACTTTAAAGCAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGACCTGGGCAGCTCTGACTTTACAGATCCATGTACTTTAAAGCAAC  650

seq1  AGCTTAGGAGGCAGAAGAAGAATATACCAAAGAAAGTATAGGATAATTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAGGAGGCAGAAGAAGAATATACCAAAGAAAGTATAGGATAATTGT  700

seq1  CTGGGCTTTCCCTCCCTCCCCCCAAAAAATGCCTAAAGTTTGGGGCTGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTTTCCCTCCCTCCCCCCAAAAAATGCCTAAAGTTTGGGGCTGCA  750

seq1  GAAATGGCTCAGAATTTAAAAGCCCTTACTGCTCTTATAGAGGGAGGTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGGCTCAGAATTTAAAAGCCCTTACTGCTCTTATAGAGGGAGGTCC  800

seq1  AGGGTTTCATCCTTAACACCCACATGGCTGATCACAAT-GGTCTGTAACT  849
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGGGTTTCATCCTTAACACCCACATGGCTGATCACAATGGGTCTGTAACT  850

seq1  CCAGTTCCAGGGGACTCATCACAGAGTGCAAAACGCAGATGCGCATAAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTCCAGGGGACTCATCACAGAGTGCAAAACGCAGATGCGCATAAAA  900

seq1  TAAAAACAAATCTTTAAAAACAATT-CCGAAAGCCATCTCCTCATGTTCA  948
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TAAAAACAAATCTTTAAAAACAATTCCCGAAAGCCATCTCCTCATGTTCA  950

seq1  C-ACGGTTAAGAAGCACCT-AGCAAGC-TAAGGACAG-AGCTGGCCGTGA  994
      | ||||||||||||||||| ||||||| ||||||||| ||||||||||||
seq2  CAACGGTTAAGAAGCACCTAAGCAAGCTTAAGGACAGAAGCTGGCCGTGA  1000

seq1  AAGTAGTCTCTGAA-TCTTGTGTGGCAGTC-TTTCTGCTGAGT-CACCTG  1041
      |||||||||||||| ||||||||||||||| |||||||||||| ||||||
seq2  AAGTAGTCTCTGAATTCTTGTGTGGCAGTCTTTTCTGCTGAGTCCACCTG  1050

seq1  TCCTTCTGCCCAGGACGC-AGCTCTGCTGTCCCGAGACT-GTGTT-GTTG  1088
      | ||||||||  | |||| ||||||||||||| |||||| ||||| ||||
seq2  T-CTTCTGCCAGGAACGCAAGCTCTGCTGTCCGGAGACTGGTGTTGGTTG  1099

seq1  ATAACCTATGCTGCCTATCAC  1109
      || | |||||||| | |||||
seq2  ATTA-CTATGCTG-CAATCAC  1118