BAC Information

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BAC

Clone NameB6Ng01-304A03
Chromosome3 (Build37)
Map Location 15,515,606 - 15,516,724
singlet/doubletsinglet
Overlap geneLOC668101
Upstream geneLOC668068, Lrrcc1, E2f5, 1810022K09Rik, LOC100039929, Car13, EG545507, Car1, LOC100041785, Car3, Car2, EG634323, LOC100039985, LOC751864, Sirpb1
Downstream geneLOC100038947, LOC622425, LOC664795, LOC381484, Ythdf3, LOC100040034
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-304A03.bB6Ng01-304A03.g
ACCGA097668GA097669
length1,1851,110
definitionB6Ng01-304A03.b B6Ng01-304A03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccaggacttggtttactgacttttctgaatgttatgtaggtgcta
cccagaagtggacagctccagcattacaacccctatctgggtcaagcctg
aaaaatacaggtgaaagaaaatcttcacagtggacagaagtccaggcagt
acaaatggttttaaactttgcttggaagaagaagggttcagatgtacaat
tattcagtgcctcatgggctatagccaatggattggctggcaggttaggg
acttaggaagatcatgattggaaaatttgtgaggaaagacatttgggtaa
ttagtatgtaaatagatctctccgaatgggtaaagctcaacaatattgac
ttacacttaccaaggttgacctggctacagctgctgctgaatgtcagatc
tgccaacagcagagaccaacactgaatcccaaatatgattccatttcttg
aggtgatcagccagcaacctgttggcaggttgattacattctaccacttc
ctcagtggacagggcaacagtctcttcttattgaagtacatatttatttt
ggtaatggatttccctttcctgcatttaatgcttctccccaaaccaccat
ccatggaattacagaataccttatccactgtcatcttattccacacagta
ttacttctgaccaatgaactcatttcacagaagtgtgactctgggtcaat
gatcatggagtctattggtcttatctacaatgttccccaacatcctgaag
catctagtatgatagaaagatggaatggcctcttgtagacacagatacag
tgctaatgatgtagcaacagcatggagggctgggcagaattcttcagaag
aaagtatgtgctttgaatcagcttctggtatatggtaaagtgtctctcat
agccaggatccacaggtctgggaatcaaggtgtgtaaaagggaatagtta
cactcactatcactcctagtaaccctataggaaagttttttcttcttttc
tcacatcctaggtcctgttggcataggagcttggatcagaagggcgaaat
acttctatcagatcactaacaaacattctattgactggagctaagattcc
ttggtcatttttggctctatgtctacttacaggttagagatacatggatg
aaggatgatgattctagatcactcatggaggagta
gaattcatacaggagaaagaaccttacaaatgtgaatgtgacgtgtgttt
tatcctaaatttcaatcgatcttcattagagaattcatacaagagagaag
ccttacaaatataatgaatgtgacaaatacttcagccaaaaacaatctca
gctcttatcagagaatgcctacagtaggcactttcacaaatgaagtgaat
gagaaaaacccgtttccaaggaagatcatcttagaattcatcagagacta
tatatcggagaaggaaattataaatgtagtaaatgttcaaatccttcagt
gttcgttcaccatttaaaatacatgaaagaatgcattcaggattaaaaaa
aaaaaacttatgaatttgatatatgaggaaaggtctttacccaaatctca
gacctaagaaaatacctggttatttatattcagaaaaaagtgtccactgg
aaaaactatggcatgtgctttataccagtggtattattggcaacacttga
agctccacactagagaattattatatatgcgaggaagttgggaaaacatt
taaataatcctcaaattttaggagcaacccagggtttatgctcagagaaa
ctgaaaatgcagcaatgaaggaaatctttcattaaaagtttttacttgtt
cacttttaaatatgtcatgatggagaagctaaaagaatatggagttgtat
aaattttcctggagactgaaatgatctatttcaaaaagaagctatgaaat
acatgcctcaaaatagctatgaaactgacagcattctgtatgtttaactc
aaatgaacatactccaattatacttcttaaaagaggatttgacaaactga
gccacaaagataagatgctctttatcctgttcagatgcctacagataagc
ggtttgcttccaatgtccgctacttattatctctttcttatgctgggttt
taagttttaggatagcattgtctttgagtccttgtgctctcatttactaa
ctgctcccctaagtcctgtatgtaactcataaatctccactggtttacag
tgaaaaaaaaaaaaaagaatggaagaagagattctcaaggtgcgaagaat
catagagaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_15515606_15516724
seq2: B6Ng01-304A03.g_66_1175

seq1  GAATTCATACAGGAGAAAGAACCTTACAAATGTGAATGTGACGTGTGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACAGGAGAAAGAACCTTACAAATGTGAATGTGACGTGTGTTT  50

seq1  TATCCTAAATTTCAATCGATCTTCATTAGAGAATTCATACAAGAGAGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTAAATTTCAATCGATCTTCATTAGAGAATTCATACAAGAGAGAAG  100

seq1  CCTTACAAATATAATGAATGTGACAAATACTTCAGCCAAAAACAATCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACAAATATAATGAATGTGACAAATACTTCAGCCAAAAACAATCTCA  150

seq1  GCTCTTATCAGAGAATGCCTACAGTAGGCACTTTCACAAATGAAGTGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTATCAGAGAATGCCTACAGTAGGCACTTTCACAAATGAAGTGAAT  200

seq1  GAGAAAAACCCGTTTCCAAGGAAGATCATCTTAGAATTCATCAGAGACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAACCCGTTTCCAAGGAAGATCATCTTAGAATTCATCAGAGACTA  250

seq1  TATATCGGAGAAGGAAATTATAAATGTAGTAAATGTTCAAATCCTTCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCGGAGAAGGAAATTATAAATGTAGTAAATGTTCAAATCCTTCAGT  300

seq1  GTTCGTTCACCATTTAAAATACATGAAAGAATGCATTCAGGATTAAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCGTTCACCATTTAAAATACATGAAAGAATGCATTCAGGATTAAAAAA  350

seq1  AAAAAACTTATGAATTTGATATATGAGGAAAGGTCTTTACCCAAATCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACTTATGAATTTGATATATGAGGAAAGGTCTTTACCCAAATCTCA  400

seq1  GACCTAAGAAAATACCTGGTTATTTATATTCAGAAAAAAGTGTCCACTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTAAGAAAATACCTGGTTATTTATATTCAGAAAAAAGTGTCCACTGG  450

seq1  AAAAACTATGGCATGTGCTTTATACCAGTGGTATTATTGGCAACACTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTATGGCATGTGCTTTATACCAGTGGTATTATTGGCAACACTTGA  500

seq1  AGCTCCACACTAGAGAATTATTATATATGCGAGGAAGTTGGGAAAACATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCACACTAGAGAATTATTATATATGCGAGGAAGTTGGGAAAACATT  550

seq1  TAAATAATCCTCAAATTTTAGGAGCAACCCAGGGTTTATGCTCAGAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAATCCTCAAATTTTAGGAGCAACCCAGGGTTTATGCTCAGAGAAA  600

seq1  CTGAAAATGCAGCAATGAAGGAAATCTTTCATTAAAAGTTTTTACTTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAATGCAGCAATGAAGGAAATCTTTCATTAAAAGTTTTTACTTGTT  650

seq1  CACTTTTAAATATGTCATGATGGAGAAGCTAAAAGAATATGGAGTTGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTTAAATATGTCATGATGGAGAAGCTAAAAGAATATGGAGTTGTAT  700

seq1  AAATTTTCCTGGAGACTGAAATGATCTATTTCAAAAAGAAGCTATGAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTCCTGGAGACTGAAATGATCTATTTCAAAAAGAAGCTATGAAAT  750

seq1  ACATGCCTCAAAATAGCTATGAAACTGACAGCATTCTGTATGTTTAACTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCCTCAAAATAGCTATGAAACTGACAGCATTCTGTATGTTTAACTC  800

seq1  AAATGAACATACTCCAATTATACTTCTTAAAAGAGGATTTGACAAACTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAACATACTCCAATTATACTTCTTAAAAGAGGATTTGACAAACTGA  850

seq1  GCCACAAAGATAAGATGCTCTTTATCCTGTTCAGATGCCTACAGATAAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAAAGATAAGATGCTCTTTATCCTGTTCAGATGCCTACAGATAAGC  900

seq1  GGTTTGCTTCCAATGTCCGCTACTTATTATCTCTTTCTTATGCT-GGTTT  949
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GGTTTGCTTCCAATGTCCGCTACTTATTATCTCTTTCTTATGCTGGGTTT  950

seq1  TAAGTTTTAGGATAGCAATTGTCTTTGAGTCCCTTGTGCTCTCATTTACT  999
      |||||||||||||||| ||||||||||||| |||||||||||||||||||
seq2  TAAGTTTTAGGATAGC-ATTGTCTTTGAGT-CCTTGTGCTCTCATTTACT  998

seq1  AACTGCTTCCCCTAAGTCCTGTATGTAACTCCAATAAATCT-CACTGGTT  1048
      |||||| ||||||||||||||||||||||||  |||||||| ||||||||
seq2  AACTGC-TCCCCTAAGTCCTGTATGTAACTC--ATAAATCTCCACTGGTT  1045

seq1  TAACAAGTTGAAAAAAAAAAAAAAAAGAAATGGAAG-AGAGAATCTC-AG  1096
      | |||   ||||||||||||||||    |||||||| ||||| |||| ||
seq2  T-ACA--GTGAAAAAAAAAAAAAA---GAATGGAAGAAGAGATTCTCAAG  1089

seq1  GTGCAGAAGATTCCATAGAGAAC  1119
      |||| ||||| | ||||||||||
seq2  GTGC-GAAGAAT-CATAGAGAAC  1110