BAC Information

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BAC

Clone NameB6Ng01-304H03
Chromosome3 (Build37)
Map Location 30,139,769 - 30,300,057
singlet/doubletdoublet
Overlap geneMds1
Upstream gene6130401L20Rik, LOC100040676, Evi1
Downstream geneLOC100040727, LOC100040734, LOC100040749, Arpm1, Mynn, Lrrc34, 4930558O21Rik, E230002P03Rik, Samd7, Tloc1, Gpr160, Phc3, LOC100040809, Prkci, Skil, Cldn11, Slc7a14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-304H03.bB6Ng01-304H03.g
ACCGA098000GA098001
length1,0521,162
definitionB6Ng01-304H03.b B6Ng01-304H03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,139,769 - 30,140,813)(30,298,888 - 30,300,057)
sequence
gaattctccaagtgatctgcacataatgagtattaatgaataatttgtta
agtagataattaactgtgcatataattttattgaatcattataccaaacc
aacattatcccactgaaaactgtcaattattttgatcctgacaactactt
ttaagaaacaaagtggtggggcacagtagattatcagacttttcatttat
atctagaaccaaaataattatttgaataacaccctaaatgcacttgagaa
ttccaactgattttatacttcatcaaaatatttatgaacagtttggatgc
aggataaacatatagaaaccatttccaaggcagacatggtaacatcacta
tggtggcagctctttggagaactagaggcaggaagactgtaaactcagta
gtttgagacagacttaggctatagagtgtcaccatgtcttcaaaagcaaa
caaagaagcaaacaaacaaataaacttaaaatcaatggcatctctgtaga
attgtagccttcacctgccataaatagaacatcacaatgaaacatcacaa
cggatatcctcaaagggagtcattgctcactgccaggattttattttctt
tgaggaatgctacaaatcgaatgacatcatggaatgtatacacttcccca
cctaagaaataggagatcaaaaggcacctaaataaatagaacactattct
tccagtaattctttctgaaaggccagtaaaattttctctctttctaccat
gagttaaaccagtcacagtatcgggtccaacaaagggatctcaaatccta
gaaaaagattgagacaattaacaaatgagccctcccactgtcacattgaa
ccctatgggctccctgtcatcacgaactctctcagttcagagtctaaatg
agtgtccagagaatctagctccagcaagatatgtgtgccctgcctgctgg
ggagaatttgaatttaaagcatatatatatatatatatatatatatatat
atagagagagagagagatgagaggtgtgtcactaattatgccacttatat
ac
gaattctcccaataaaggaatgtttgtcactgtctagtgtctgtgggcag
tgcgcatggcagggtattcctggccttcggcctctcaaagccataggttc
taataccgtggagactgtggtgctctgaagacaagggatactgtaaggaa
cacatggccccagaaggattcacgacaattcgagacagatacccactacg
ggtccgcctcagtggaggagtctgacaggagcccccagttccatgctgca
cggggattgtctccattggcccgtggacaaggcaagtagcttctcccaga
ggacattatagaggtgagtgagccctttatgtctttgctgctgaatccat
cttgtcactcctttatgttgtccttgttagaagagtctagaacattctgt
gactgaaccaaggttaccaggaggcggggatgactggggacattttggaa
catccctgccatggtccctttttactgatgttgttcttgtgacttaagga
gattctgttggtcttcttaagttatttcattatagaaactgcctcaccat
taacccaccttgaacaaggtcattcattcggagatctttcccagtccaaa
tgtagtccagtgaagggtcttatttgaaacgtcacttccaacacctgcat
ctactggctgtgagccctgaatcagccttgagaggaaataaaatcattca
gctgaattatatgaaatcactgtgctggtttcagctctgttctcacaggg
tacatgtcccagtctcagaaataagtactggaagctttcatttgccatct
gagggagaagagaaggaaagggctattttccatggtattctccacctggg
gcttggccacgcccatgaaaggagtttaaagaatttgtcacttcactgat
gaaaaacaatgacacctataatcctatttctccagttacaaaagatgctt
gctgtaagcaaatcaagttaaatataaacccggaggaagctgtgtgtaga
cttattctgttacaactcatgattcagctctttttatctgttttttaaag
ctccactgtttcagagtcattaaggtactctgaataaaatgtcagtccat
tcaaggctgcagaccttgctgatagttggaactaactgaatgatggcttc
catacccttatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_30139769_30140813
seq2: B6Ng01-304H03.b_44_1095

seq1  GAATTCTCCAAGTGATCTGCACATAATGAGTATTAATGAATAATTTGTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCAAGTGATCTGCACATAATGAGTATTAATGAATAATTTGTTA  50

seq1  AGTAGATAATTAACTGTGCATATAATTTTATTGAATCATTATACCAAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGATAATTAACTGTGCATATAATTTTATTGAATCATTATACCAAACC  100

seq1  AACATTATCCCACTGAAAACTGTCAATTATTTTGATCCTGACAACTACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTATCCCACTGAAAACTGTCAATTATTTTGATCCTGACAACTACTT  150

seq1  TTAAGAAACAAAGTGGTGGGGCACAGTAGATTATCAGACTTTTCATTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAAACAAAGTGGTGGGGCACAGTAGATTATCAGACTTTTCATTTAT  200

seq1  ATCTAGAACCAAAATAATTATTTGAATAACACCCTAAATGCACTTGAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGAACCAAAATAATTATTTGAATAACACCCTAAATGCACTTGAGAA  250

seq1  TTCCAACTGATTTTATACTTCATCAAAATATTTATGAACAGTTTGGATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAACTGATTTTATACTTCATCAAAATATTTATGAACAGTTTGGATGC  300

seq1  AGGATAAACATATAGAAACCATTTCCAAGGCAGACATGGTAACATCACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAAACATATAGAAACCATTTCCAAGGCAGACATGGTAACATCACTA  350

seq1  TGGTGGCAGCTCTTTGGAGAACTAGAGGCAGGAAGACTGTAAACTCAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGCAGCTCTTTGGAGAACTAGAGGCAGGAAGACTGTAAACTCAGTA  400

seq1  GTTTGAGACAGACTTAGGCTATAGAGTGTCACCATGTCTTCAAAAGCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAGACAGACTTAGGCTATAGAGTGTCACCATGTCTTCAAAAGCAAA  450

seq1  CAAAGAAGCAAACAAACAAATAAACTTAAAATCAATGGCATCTCTGTAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAGCAAACAAACAAATAAACTTAAAATCAATGGCATCTCTGTAGA  500

seq1  ATTGTAGCCTTCACCTGCCATAAATAGAACATCACAATGAAACATCACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAGCCTTCACCTGCCATAAATAGAACATCACAATGAAACATCACAA  550

seq1  CGGATATCCTCAAAGGGAGTCATTGCTCACTGCCAGGATTTTATTTTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATATCCTCAAAGGGAGTCATTGCTCACTGCCAGGATTTTATTTTCTT  600

seq1  TGAGGAATGCTACAAATCGAATGACATCATGGAATGTATACACTTCCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAATGCTACAAATCGAATGACATCATGGAATGTATACACTTCCCCA  650

seq1  CCTAAGAAATAGGAGATCAAAAGGCACCTAAATAAATAGAACACTATTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGAAATAGGAGATCAAAAGGCACCTAAATAAATAGAACACTATTCT  700

seq1  TCCAGTAATTCTTTCTGAAAGGCCAGTAAAATTTTCTCTCTTTCTACCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTAATTCTTTCTGAAAGGCCAGTAAAATTTTCTCTCTTTCTACCAT  750

seq1  GAGTTAAACCAGTCACAGTATCGGGTCCAACAAAGGGATCTCAAATCCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTAAACCAGTCACAGTATCGGGTCCAACAAAGGGATCTCAAATCCTA  800

seq1  GAAAAAGATTGAGACAATTAACAAATGAGCCCTCCCACTGTCACATTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGATTGAGACAATTAACAAATGAGCCCTCCCACTGTCACATTGAA  850

seq1  CCCTATGGGCTCCCTGTCATCACGAACTCTCTCAGTTCAGAGTCTAAATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATGGGCTCCCTGTCATCACGAACTCTCTCAGTTCAGAGTCTAAATG  900

seq1  AGTGTCCAGAGAATCTAGCTCCAGCAAGATATGTGTGCCCTGCCTGCTGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCCAGAGAATCTAGCTCCAGCAAGATATGTGTGCCCTGCCTGCTGG  950

seq1  GGAGAATTTGAATTTAAAGCATATATATATATATATATATATATATATAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAATTTGAATTTAAAGCATATATATATATATATATATATATATATAT  1000

seq1  ATATAGAGAGAGAGAGAGAGAGAGAGAGAGAGTCACTA-----------T  1039
      ||| |||||||||||||    ||||| | | |||||||           |
seq2  ATAGAGAGAGAGAGAGA---TGAGAG-GTGTGTCACTAATTATGCCACTT  1046

seq1  ATATAC  1045
      ||||||
seq2  ATATAC  1052

seq1: chr3_30298888_30300057
seq2: B6Ng01-304H03.g_66_1227 (reverse)

seq1  AATATAGGGTATGGAAGCCATCCATCACTTAG-TCCAACTATACAGCCAA  49
      |||| |||||||||||||||||  ||| |||| ||||||||| ||| |||
seq2  AATA-AGGGTATGGAAGCCATCATTCAGTTAGTTCCAACTAT-CAG-CAA  47

seq1  TGTCTGCACCCT--GATTGACTGACATTTTAATTTCAAGAGTACCTAAAT  97
       ||||||| |||   || |||||||||||||  ||| ||||||||| |||
seq2  GGTCTGCAGCCTTGAATGGACTGACATTTTA--TTC-AGAGTACCTTAAT  94

seq1  GACCTCTGAAAACAGT-GAGCTTTTAAAAAACAAGATAAAAAGAAGCTGA  146
      || ||||| ||||||| |||| |||||||||| |||||||||| ||||||
seq2  GA-CTCTG-AAACAGTGGAGC-TTTAAAAAAC-AGATAAAAAG-AGCTGA  139

seq1  ATCATGAGTTGTAACAGAATAAGTCTTACACACAGCTTCCTCC-GGTTTA  195
      ||||||||||||||||||||||||| ||||||||||||||||| ||||||
seq2  ATCATGAGTTGTAACAGAATAAGTC-TACACACAGCTTCCTCCGGGTTTA  188

seq1  TATTTTAACTTGATTTGCTTACAGCAAGCATCTTTTGTAACTGGAGAAAT  245
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TA-TTTAACTTGATTTGCTTACAGCAAGCATCTTTTGTAACTGGAGAAAT  237

seq1  AGGATTATAGGTGTCATTGTTTTTCATCAGTGAAGTGACAAATTCTTTAA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTATAGGTGTCATTGTTTTTCATCAGTGAAGTGACAAATTCTTTAA  287

seq1  ACTCCTTTCATGGGCGTGGCCAAGCCCCAGGTGGAGAATACCATGGAAAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTTTCATGGGCGTGGCCAAGCCCCAGGTGGAGAATACCATGGAAAA  337

seq1  TAGCCCTTTCCTTCTCTTCTCCCTCAGATGGCAAATGAAAGCTTCCAGTA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCTTTCCTTCTCTTCTCCCTCAGATGGCAAATGAAAGCTTCCAGTA  387

seq1  CTTATTCCTGAGACTGGGACATGTACCCTGTGAGAACAGAGCTGAAACCA  445
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTCTGAGACTGGGACATGTACCCTGTGAGAACAGAGCTGAAACCA  437

seq1  GCACAGTGATTTCATATAATTCAGCTGAATGATTTTATTTCCTCTCAAGG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGTGATTTCATATAATTCAGCTGAATGATTTTATTTCCTCTCAAGG  487

seq1  CTGATTCAGGGCTCACAGCCAGTAGATGCAGGTGTTGGAAGTGACGTTTC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTCAGGGCTCACAGCCAGTAGATGCAGGTGTTGGAAGTGACGTTTC  537

seq1  AAATAAGACCCTTCACTGGACTACATTTGGACTGGGAAAGATCTCCGAAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGACCCTTCACTGGACTACATTTGGACTGGGAAAGATCTCCGAAT  587

seq1  GAATGACCTTGTTCAAGGTGGGTTAATGGTGAGGCAGTTTCTATAATGAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGACCTTGTTCAAGGTGGGTTAATGGTGAGGCAGTTTCTATAATGAA  637

seq1  ATAACTTAAGAAGACCAACAGAATCTCCTTAAGTCACAAGAACAACATCA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTTAAGAAGACCAACAGAATCTCCTTAAGTCACAAGAACAACATCA  687

seq1  GTAAAAAGGGACCATGGCAGGGATGTTCCAAAATGTCCCCAGTCATCCCC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAAGGGACCATGGCAGGGATGTTCCAAAATGTCCCCAGTCATCCCC  737

seq1  GCCTCCTGGTAACCTTGGTTCAGTCACAGAATGTTCTAGACTCTTCTAAC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCTGGTAACCTTGGTTCAGTCACAGAATGTTCTAGACTCTTCTAAC  787

seq1  AAGGACAACATAAAGGAGTGACAAGATGGATTCAGCAGCAAAGACATAAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACAACATAAAGGAGTGACAAGATGGATTCAGCAGCAAAGACATAAA  837

seq1  GGGCTCACTCACCTCTATAATGTCCTCTGGGAGAAGCTACTTGCCTTGTC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCACTCACCTCTATAATGTCCTCTGGGAGAAGCTACTTGCCTTGTC  887

seq1  CACGGGCCAATGGAGACAATCCCCGTGCAGCATGGAACTGGGGGCTCCTG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGGCCAATGGAGACAATCCCCGTGCAGCATGGAACTGGGGGCTCCTG  937

seq1  TCAGACTCCTCCACTGAGGCGGACCCGTAGTGGGTATCTGTCTCGAATTG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACTCCTCCACTGAGGCGGACCCGTAGTGGGTATCTGTCTCGAATTG  987

seq1  TCGTGAATCCTTCTGGGGCCATGTGTTCCTTACAGTATCCCTTGTCTTCA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGAATCCTTCTGGGGCCATGTGTTCCTTACAGTATCCCTTGTCTTCA  1037

seq1  GAGCACCACAGTCTCCACGGTATTAGAACCTATGGCTTTGAGAGGCCGAA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACCACAGTCTCCACGGTATTAGAACCTATGGCTTTGAGAGGCCGAA  1087

seq1  GGCCAGGAATACCCTGCCATGCGCACTGCCCACAGACACTAGACAGTGAC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGGAATACCCTGCCATGCGCACTGCCCACAGACACTAGACAGTGAC  1137

seq1  AAACATTCCTTTATTGGGAGAATTC  1170
      |||||||||||||||||||||||||
seq2  AAACATTCCTTTATTGGGAGAATTC  1162