BAC Information

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BAC

Clone NameB6Ng01-304I19
Chromosome3 (Build37)
Map Location 135,860,949 - 136,054,925
singlet/doubletdoublet
Overlap geneBank1, LOC668868
Upstream geneEG620439, Cenpe, Bdh2, C80638, 4933425K02Rik, Zcd2, Ube2d3, Manba, LOC668745, Nfkb1, ENSMUSG00000045520, Slc39a8, LOC100039350, LOC383923, LOC100039477
Downstream genePpp3ca, LOC668870, LOC100039447, Emcn
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-304I19.bB6Ng01-304I19.g
ACCGA098078GA098079
length1,187724
definitionB6Ng01-304I19.b B6Ng01-304I19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(136,053,721 - 136,054,925)(135,860,949 - 135,861,672)
sequence
gaattcaaagtcaaccccactaagaaacttataattaaatttgcattttc
tttatatttatttcatttaattttaataaaatatagatattctcctacct
gggaacaaagacattctcatgtcctctagaaggctgatcaagcttgtgac
tattagcttcaatgccaaattctttgtagctttatttgtctgttaatacc
tatagatgtacacctaaaagtatacttttgacactcataaatgatccttc
tgtcattatttgactaaaaaaaaataaaatccctttccccatatccaatc
aaaagttttcattttgctgaaaatgaagagctatgttagtcttttggtgt
gtttgagacagaaaatgggacatagcattttccgaggcacagaacaggca
tcaatactgcaaaacatgattaaaatattttaacatcattattagtccca
atgataagctctgtaagttcctactgtacattcattttaattttttgata
aagaaacaaagatgttggtggatggggcatttggccctattgttagcaac
tgtaggactctcttgctgctttactttataaagtcaaagaccaaaggtca
gacagccagtgagacaaccttaatgccatcatgaacatgttttgagcatt
caagagactctaaggaaactatgcagcaatcacagctgcttgttccatct
tctgaaggcaccactttagctggacctgtttgaagctgtttaaagtaagt
tactcttactttactcgcctgtgcctctccgaactgtagatgaactcagt
gccacctaaactgaaagggtagcacttcactagaaaggaggacttcatta
gaagtgaggatttcactaagcagcaagacagagggactgctatgtctgat
gctaaagaagaatttatgaattcctaggcaaatggatggacctggagggc
atcatcctgagtgaggtaacccaatcacaaggaactcacacatatgtact
cactgataagtggatatagccagaaacttagataccaagattatattgaa
tacaatttggctaaacgcatgaactcagagacgaagacccaaagtgtgga
acacttggcctcttaggattgggacaaacaccaatggaaggattacagga
ccaggtcggactgtgacgagatgacatctagagactg

gaattcatttgtgcattagttgcatcagcacatattacagctatgctgtg
aaagcagtggaaactgaatagggttttactgacacaatatgtggtactga
gcatggtgtgagaaatgcattattatttctcgtaagtaggctttaattaa
aaatttaaaagagcatttattattttctgaaacccccttacttatttaat
ttttttattattattttcttataatcaagaagaacacagccaacaggaaa
ggatatgttgaatacaatcccaagctatcttgattaaggggatttaagac
aaatgttttggaatgaaagaattcatttaatagattaaagatacattaaa
acaaaatatagcacacatattcatccttgtctgaaaggaagttatagatt
aacctatctaagggaaaaatggttatagttattttctatcttcattttag
gagttagactaaacagggaaggaaaaatataatgggggatatttacaagt
caaatagttgaactttttaactagaaaagactaactatgagtataattca
ctcagaagcaaataaaatattaaaagtttttgcaagaagattctgatgct
aaggcttgataaaatccaaagactctttatatatagaatttgactttctt
agcaacctgatactacttcaagcagactttagatgggaagaaagtcaatg
tgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_136053721_136054925
seq2: B6Ng01-304I19.b_44_1230 (reverse)

seq1  CAGTCTCTAGATGGTCCATCCTTTCGTCACAGCTCCAAACTTTGTCTCTG  50
      |||||||||||||     || | ||||||||| |||  || | ||| |||
seq2  CAGTCTCTAGATG-----TCATCTCGTCACAG-TCC-GACCTGGTC-CTG  42

seq1  TAACTCCTTTCATGGGTGTTTTGTTCCCAATTCTAAGAAGGGGCAAAGTG  100
      ||| ||||| ||| |||||||   ||||||| ||||||   ||| |||||
seq2  TAA-TCCTTCCATTGGTGTTT--GTCCCAATCCTAAGA---GGCCAAGTG  86

seq1  -TCCACACTTT-GGTCTTCGTTCTTCTTGAGTTTCATGCGTTTAG-CAAA  147
       |||||||||| |||||||| |||   |||| ||||||||||||| ||||
seq2  TTCCACACTTTGGGTCTTCG-TCT--CTGAG-TTCATGCGTTTAGCCAAA  132

seq1  TTGTAT--CATAT-ATCTTGGGTATCCTAAGTTTCTGGGCTAATATCCAC  194
      ||||||   |||| ||||| ||||| |||||||||| |||| ||||||||
seq2  TTGTATTCAATATAATCTT-GGTAT-CTAAGTTTCT-GGCT-ATATCCAC  178

seq1  TTATCAGTGAGTACATATTGTGTGAGTTCCTTTGTGATTGGGTTACCTCA  244
      ||||||||||||||||| |||||||||||| |||||||||||||||||||
seq2  TTATCAGTGAGTACATA-TGTGTGAGTTCC-TTGTGATTGGGTTACCTCA  226

seq1  CTCAGGATGATGCCCTCCAGGTCCATCCATTTGCCTAGGAATTTCATAAA  294
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTCAGGATGATGCCCTCCAGGTCCATCCATTTGCCTAGGAA-TTCATAAA  275

seq1  TTCTTCTTTAGCATCAGACATAGCAGTCCCTCTGTCTTGCTGCTTAGTGA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTTAGCATCAGACATAGCAGTCCCTCTGTCTTGCTGCTTAGTGA  325

seq1  AATCCTCACTTCTAATGAAGTCCTCCTTTCTAGTGAAGTGCTACCC-TTC  393
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AATCCTCACTTCTAATGAAGTCCTCCTTTCTAGTGAAGTGCTACCCTTTC  375

seq1  AGTTTAGGTGGCACTGAGTTCATCTACAGTTCGGAGAGGCACAGGCGAGT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAGGTGGCACTGAGTTCATCTACAGTTCGGAGAGGCACAGGCGAGT  425

seq1  AAAGTAAGAGTAACTTACTTTAAACAGCTTCAAACAGGTCCAGCTAAAGT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAAGAGTAACTTACTTTAAACAGCTTCAAACAGGTCCAGCTAAAGT  475

seq1  GGTGCCTTCAGAAGATGGAACAAGCAGCTGTGATTGCTGCATAGTTTCCT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCTTCAGAAGATGGAACAAGCAGCTGTGATTGCTGCATAGTTTCCT  525

seq1  TAGAGTCTCTTGAATGCTCAAAACATGTTCATGATGGCATTAAGGTTGTC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTCTCTTGAATGCTCAAAACATGTTCATGATGGCATTAAGGTTGTC  575

seq1  TCACTGGCTGTCTGACCTTTGGTCTTTGACTTTATAAAGTAAAGCAGCAA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGGCTGTCTGACCTTTGGTCTTTGACTTTATAAAGTAAAGCAGCAA  625

seq1  GAGAGTCCTACAGTTGCTAACAATAGGGCCAAATGCCCCATCCACCAACA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTCCTACAGTTGCTAACAATAGGGCCAAATGCCCCATCCACCAACA  675

seq1  TCTTTGTTTCTTTATCAAAAAATTAAAATGAATGTACAGTAGGAACTTAC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTTTCTTTATCAAAAAATTAAAATGAATGTACAGTAGGAACTTAC  725

seq1  AGAGCTTATCATTGGGACTAATAATGATGTTAAAATATTTTAATCATGTT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTTATCATTGGGACTAATAATGATGTTAAAATATTTTAATCATGTT  775

seq1  TTGCAGTATTGATGCCTGTTCTGTGCCTCGGAAAATGCTATGTCCCATTT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGTATTGATGCCTGTTCTGTGCCTCGGAAAATGCTATGTCCCATTT  825

seq1  TCTGTCTCAAACACACCAAAAGACTAACATAGCTCTTCATTTTCAGCAAA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTCAAACACACCAAAAGACTAACATAGCTCTTCATTTTCAGCAAA  875

seq1  ATGAAAACTTTTGATTGGATATGGGGAAAGGGATTTTATTTTTTTTTAGT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAACTTTTGATTGGATATGGGGAAAGGGATTTTATTTTTTTTTAGT  925

seq1  CAAATAATGACAGAAGGATCATTTATGAGTGTCAAAAGTATACTTTTAGG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAATGACAGAAGGATCATTTATGAGTGTCAAAAGTATACTTTTAGG  975

seq1  TGTACATCTATAGGTATTAACAGACAAATAAAGCTACAAAGAATTTGGCA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATCTATAGGTATTAACAGACAAATAAAGCTACAAAGAATTTGGCA  1025

seq1  TTGAAGCTAATAGTCACAAGCTTGATCAGCCTTCTAGAGGACATGAGAAT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGCTAATAGTCACAAGCTTGATCAGCCTTCTAGAGGACATGAGAAT  1075

seq1  GTCTTTGTTCCCAGGTAGGAGAATATCTATATTTTATTAAAATTAAATGA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGTTCCCAGGTAGGAGAATATCTATATTTTATTAAAATTAAATGA  1125

seq1  AATAAATATAAAGAAAATGCAAATTTAATTATAAGTTTCTTAGTGGGGTT  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATATAAAGAAAATGCAAATTTAATTATAAGTTTCTTAGTGGGGTT  1175

seq1  GACTTTGAATTC  1205
      ||||||||||||
seq2  GACTTTGAATTC  1187


seq1: chr3_135860949_135861672
seq2: B6Ng01-304I19.g_67_790

seq1  GAATTCATTTGTGCATTAGTTGCATCAGCACATATTACAGCTATGCTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTGTGCATTAGTTGCATCAGCACATATTACAGCTATGCTGTG  50

seq1  AAAGCAGTGGAAACTGAATAGGGTTTTACTGACACAATATGTGGTACTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGTGGAAACTGAATAGGGTTTTACTGACACAATATGTGGTACTGA  100

seq1  GCATGGTGTGAGAAATGCATTATTATTTCTCGTAAGTAGGCTTTAATTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGTGTGAGAAATGCATTATTATTTCTCGTAAGTAGGCTTTAATTAA  150

seq1  AAATTTAAAAGAGCATTTATTATTTTCTGAAACCCCCTTACTTATTTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAAAAGAGCATTTATTATTTTCTGAAACCCCCTTACTTATTTAAT  200

seq1  TTTTTTATTATTATTTTCTTATAATCAAGAAGAACACAGCCAACAGGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTATTATTATTTTCTTATAATCAAGAAGAACACAGCCAACAGGAAA  250

seq1  GGATATGTTGAATACAATCCCAAGCTATCTTGATTAAGGGGATTTAAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATGTTGAATACAATCCCAAGCTATCTTGATTAAGGGGATTTAAGAC  300

seq1  AAATGTTTTGGAATGAAAGAATTCATTTAATAGATTAAAGATACATTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTTTGGAATGAAAGAATTCATTTAATAGATTAAAGATACATTAAA  350

seq1  ACAAAATATAGCACACATATTCATCCTTGTCTGAAAGGAAGTTATAGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATATAGCACACATATTCATCCTTGTCTGAAAGGAAGTTATAGATT  400

seq1  AACCTATCTAAGGGAAAAATGGTTATAGTTATTTTCTATCTTCATTTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTATCTAAGGGAAAAATGGTTATAGTTATTTTCTATCTTCATTTTAG  450

seq1  GAGTTAGACTAAACAGGGAAGGAAAAATATAATGGGGGATATTTACAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTAGACTAAACAGGGAAGGAAAAATATAATGGGGGATATTTACAAGT  500

seq1  CAAATAGTTGAACTTTTTAACTAGAAAAGACTAACTATGAGTATAATTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAGTTGAACTTTTTAACTAGAAAAGACTAACTATGAGTATAATTCA  550

seq1  CTCAGAAGCAAATAAAATATTAAAAGTTTTTGCAAGAAGATTCTGATGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAGCAAATAAAATATTAAAAGTTTTTGCAAGAAGATTCTGATGCT  600

seq1  AAGGCTTGATAAAATCCAAAGACTCTTTATATATAGAATTTGACTTTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTTGATAAAATCCAAAGACTCTTTATATATAGAATTTGACTTTCTT  650

seq1  AGCAACCTGATACTACTTCAAGCAGACTTTAGATGGGAAGAAAGTCAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACCTGATACTACTTCAAGCAGACTTTAGATGGGAAGAAAGTCAATG  700

seq1  TGTGTGTGTGTGTGTGTGTGTGTG  724
      ||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTG  724


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