BAC Information

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BAC

Clone NameB6Ng01-304N16
Chromosome3 (Build37)
Map Location 18,596,385 - 18,597,374
singlet/doubletsinglet
Overlap genenone
Upstream geneENSMUSG00000074674, LOC100040120, Cypt12, LOC545508, Bhlhb5, Cyp7b1, LOC622921, LOC100040153
Downstream geneArmc1, Mtfr1, Pde7a, Dnajc5b, EG620290, Trim55, Crh
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-304N16.bB6Ng01-304N16.g
ACCGA098293GA098294
length9911,187
definitionB6Ng01-304N16.b B6Ng01-304N16.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ctcttcagcccacacactgtgttattgggaaaatgatttttgggaagaac
aagatgatgcgcaaagaactgaactgaagctcagatactctgaatggaac
agacaatcttggggtcagaaatttatagtgcaacattgaaaggtgtattg
attttacatagaaaaggagaaatgtcattatattcaaagacgttgggcaa
gtaaagttacaaacattgaatggaagggtatttaaagttctgtcctagac
aatacttttgtttgctttgagagttttacattttgaattataaagacatg
ttaagttactgaaagtataacaatgtaaaaacagaattctaggcctttag
gcccaggcttgggaatgtggcctttgtaaaggtatgctaatcataaaaga
gatagcgacattcctctacccacccgcttcctgggttcaaagagtgctca
ttcaaagaaagtcaccctggccattaccagaacctgcaatgcaaatgtgc
tattgttaggggctcttagaagctgtcttgagagttaacaattaccaggt
attccttgtgactcttgtaactttacacttccttgtgactcttaactggt
atctttggtatcttccaacaaagccctccccacttccttgagtttcggtt
tcttcctttaaatacccccttacccagctactcggcgcgccacagtcctc
tacccctgcgtggtgtatgaccgtgggcccgagagcgctcttgaataaaa
atcctcttgcaatttgcaacaagaccgttttctcgttggtgattttgggg
tgtcgcctctcctgagtcagaacgtgggggagtcctcacgttgtgggtct
ttcattaccatactgctatatgatactgtttctattttcttgtcttttct
attatccgtgctccccccttcccttctttccttccttcccttcctttctt
ccttccattctttctttaccccgcccccccctttctttctt
gaattctctgtttagctctgcatcccatttgttaattgagttattttagt
tttggaggttaatttcatgagttctttatatattttggatattatccctc
tttcagatgaagggtgagtgaagatttttccagatctataggttgctaat
ttgtcctattgatggtatcttttgtcttacagaagcttttctggctcgta
aagtcccagttatcaattgttagtcttagagcctgagccattggtgtttt
attcaggaaatttcaagtctctttgtcaatttctcttctattagattcag
tatgtctggttttatattaaggtcctgatccacttgaacttgatctttgt
gcaaggtgataaacatggatctattttcattcttctacatgccagtcacc
aattagaacagcactaatttactgaagatgctttcttttttccattgtgt
atttttggcttctttgtcaaagatcaactgtccataagtctgtgttttat
gtataattacatggtcagttttggagaaggttccatgaggttctgagtag
aaggtatattttttttctttttaggggagaaatgttctatagttatctgt
taaatccatttcgttcataacttctgttagtttcactgtgtctctgttta
gtttctgtttccatgacttgtccattggtaagagtgaggtgttgaaatct
cccactaccggaagatctagcaaaacctctcctggatatatacccagaag
atgttccaactggtagtaaggatacatgctccactatgttcatagcagcc
ctatttataatagccagaagctggaaagaaatgtccctcaacagaggaat
ggatacagaaaatgtggtacatttgcacaatggagtactactcagctatt
aaaaacaatgaatttattgaaattcttaggcaaatgaatgtatctggagg
atatcatccctgagtgaggtaccccaatcaccaaaagaagtcacttgaat
aatgcactcactgataagttggatataagcccaagaaactagaataccca
gatgcaattggcaaaatcccaagaaaatcagtagaggacgacctaccaaa
gggatacttcattcttcttagaaatagtaataaattccattaaagagatt
accgaagaaccaagcttgaagatttagcatcgacaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_18596385_18597374
seq2: B6Ng01-304N16.b_56_1046 (reverse)

seq1  AAGAAAGAAAGAGAGAGAGAGAGGTAAAGAAAGAATGGAAGGAAGAAAGG  50
      ||||||||||| | | | | | ||||||||||||||||||||||||||||
seq2  AAGAAAGAAAG-GGGGGGGCGGGGTAAAGAAAGAATGGAAGGAAGAAAGG  49

seq1  GAGGG-AGGGAGGGAAGAAGGG-AGGGGGGAGCACGGATAATAGAAAAGA  98
       |||| ||| ||| |||||||| |||||||||||||||||||||||||||
seq2  AAGGGAAGGAAGGAAAGAAGGGAAGGGGGGAGCACGGATAATAGAAAAGA  99

seq1  CAAGAAAATAGAAACAGTATCATATAGCAGTATGGTAATGAAAGACCCAC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAATAGAAACAGTATCATATAGCAGTATGGTAATGAAAGACCCAC  149

seq1  AACGTGAGGACTCCCCCACGTTCTGACTCAGGAGAGGCGACACCCCAAAA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTGAGGACTCCCCCACGTTCTGACTCAGGAGAGGCGACACCCCAAAA  199

seq1  TCACCAACGAGAAAACGGTCTTGTTGCAAATTGCAAGAGGATTTTTATTC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAACGAGAAAACGGTCTTGTTGCAAATTGCAAGAGGATTTTTATTC  249

seq1  AAGAGCGCTCTCGGGCCCACGGTCATACACCACGCAGGGGTAGAGGACTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCGCTCTCGGGCCCACGGTCATACACCACGCAGGGGTAGAGGACTG  299

seq1  TGGCGCGCCGAGTAGCTGGGTAAGGGGGTATTTAAAGGAAGAAACCGAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGCGCCGAGTAGCTGGGTAAGGGGGTATTTAAAGGAAGAAACCGAAA  349

seq1  CTCAAGGAAGTGGGGAGGGCTTTGTTGGAAGATACCAAAGATACCAGTTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGGAAGTGGGGAGGGCTTTGTTGGAAGATACCAAAGATACCAGTTA  399

seq1  AGAGTCACAAGGAAGTGTAAAGTTACAAGAGTCACAAGGAATACCTGGTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCACAAGGAAGTGTAAAGTTACAAGAGTCACAAGGAATACCTGGTA  449

seq1  ATTGTTAACTCTCAAGACAGCTTCTAAGAGCCCCTAACAATAGCACATTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTAACTCTCAAGACAGCTTCTAAGAGCCCCTAACAATAGCACATTT  499

seq1  GCATTGCAGGTTCTGGTAATGGCCAGGGTGACTTTCTTTGAATGAGCACT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGCAGGTTCTGGTAATGGCCAGGGTGACTTTCTTTGAATGAGCACT  549

seq1  CTTTGAACCCAGGAAGCGGGTGGGTAGAGGAATGTCGCTATCTCTTTTAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAACCCAGGAAGCGGGTGGGTAGAGGAATGTCGCTATCTCTTTTAT  599

seq1  GATTAGCATACCTTTACAAAGGCCACATTCCCAAGCCTGGGCCTAAAGGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGCATACCTTTACAAAGGCCACATTCCCAAGCCTGGGCCTAAAGGC  649

seq1  CTAGAATTCTGTTTTTACATTGTTATACTTTCAGTAACTTAACATGTCTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAATTCTGTTTTTACATTGTTATACTTTCAGTAACTTAACATGTCTT  699

seq1  TATAATTCAAAATGTAAAACTCTCAAAGCAAACAAAAGTATTGTCTAGGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTCAAAATGTAAAACTCTCAAAGCAAACAAAAGTATTGTCTAGGA  749

seq1  CAGAACTTTAAATACCCTTCCATTCAATGTTTGTAACTTTACTTGCCCAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTTTAAATACCCTTCCATTCAATGTTTGTAACTTTACTTGCCCAA  799

seq1  CGTCTTTGAATATAATGACATTTCTCCTTTTCTATGTAAAATCAATACAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTTTGAATATAATGACATTTCTCCTTTTCTATGTAAAATCAATACAC  849

seq1  CTTTCAATGTTGCACTATAAATTTCTGACCCCAAGATTGTCTGTTCCATT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAATGTTGCACTATAAATTTCTGACCCCAAGATTGTCTGTTCCATT  899

seq1  CAGAGTATCTGAGCTTCAGTTCAGTTCTTTGCGCATCATCTTGTTCTTCC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTATCTGAGCTTCAGTTCAGTTCTTTGCGCATCATCTTGTTCTTCC  949

seq1  CAAAAATCATTTTCCCAATAACACAGTGTGTGGGCTGAAGAG  990
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATCATTTTCCCAATAACACAGTGTGTGGGCTGAAGAG  991