BAC Information

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BAC

Clone NameB6Ng01-304O18
Chromosome3 (Build37)
Map Location 84,079,892 - 84,218,584
singlet/doubletdoublet
Overlap genenone
Upstream geneDchs2, 1700028M03Rik, LOC100042007, LOC100042091, Sfrp2, LOC633522, Tlr2, D930015E06Rik, Mnd1, Trim2, EG624713
Downstream gene6330505N24Rik, Arfip1, EG667788, EG627369, Tigd4, Tmem154, LOC624889, Fbxw7, Dear1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-304O18.bB6Ng01-304O18.g
ACCGA098344GA098345
length1,1501,075
definitionB6Ng01-304O18.b B6Ng01-304O18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,079,892 - 84,081,037)(84,217,511 - 84,218,584)
sequence
gaattcttccatgtggccagggtacgtagcatggcagcccacctaaggaa
tgacacttggagagtgttttataaaggtaagcatcccgaaacctagcagt
gtcacttctatccaactaattaagataaatgaaaacatgtcttgattgtt
cttagatatgttaataataacccaatctggaagcaagagactaatgcaaa
aaaaaatcatatatccacactcaggaataaagctaagctactgatatata
cactggaaacacagccggagacacagctcgaaacacagctcccaggcaag
ctgaacaaaggagatggccacaagactggctgcaatgatagaagagaacc
taagcagatgataactggctggtcgcacaggtcagtggtacggtgcttga
ccaacattcacaaaaccttgggacccatccttaacccagtaacagacaga
caacaaagccagacacagcagaacacacctgtagccccaggtacctggag
aggctaagacagaaggctcactggagcctggacgttcaaggctagcctgg
tcaacacaaatcgagtctgtcaaaagcaaagcagtcaacagtggcagaag
acactggccagtgattctgagtgcagaggcaggagtgatggatgaacgtg
atgaaaatgggtgtggtgtatatttttcaacacttaggaactgtggactg
aaaacgactgtacttgattccctgtaagttctagagccacctagatgtag
aacattccatccaagctaataacagcttcatcctctcacccaactgggct
gtcttccttcagctcttgtatgcctgcagcctgaggagggagagggaaag
gctgaccctttctcttttatatcctccttctctttccaatcctggagtcg
gcctatgggagagagatatttattatgcccttgggtaccataaaatagga
tgttgttggttcagaacttgggcatattagtcttcttgaccatctggtgg
gagcattgcaatggtcctgctttcaccttctgcaagagatactgttgtgt
acttctcaatgtctcttggctgacatggactcttggtgtctgggacttcg
ggagtctggcctcattagactagtctttgttcgaattcagtcacctcttc

gaattctccaggttaaccccgtcttcagatctctaatgccaccccatcgt
gggcaaagatctattttccaagtgaggtaacaggagaactggacctcctt
gggcagccatgtttggatgcactgtggacacttggaaaacaggagcatcc
cagatcttacccttcagggcagaaaacaatgtgtgtccatctgacagtca
cacaaggagccaacacatggaggcatggatggtgggttccctggggtgag
acgcaatctgaggtgacttggaccctcagaaccactgaggggaggcttct
ggtccacacaatcagcacagggccaggcgcagggagccttctacttgcct
gtggttgcagaaatgactagtttccacgtttttctgactccctggccgtg
gccgagagatgaagttccacagatgtgtaaataaatgagaagccagggca
tgatttctaggaaaagcccctcagtgagacacagataactcagcagcctg
gccggctggcccttcctctcctttcttttttcctgttcaagatggatgtg
ctagtgggtgttggttgtctgttccttatctcgttttcagcctcctcttc
agttctttaatcagtagtttttggctccaatatctcatcttctgagctgc
cttccctggctgacatcatatctgaagttgcctcccagttcttggcatac
ctctttctgctgcctggcttctcctaagcccatgctgtgcctctgacaat
acacattgtcttctttcttcatggcttccttgatgctgtctagagtcctt
gctgggagaaaaggacatgagcccatgagagggcctcaggctgcctagct
gactgctgttgttaggggaatcctttgtctgtgatgggcgctaagtaatg
gctgcgagggtgagctttgtgaggactcagttcggcaccttggaaggagg
tggtgctgtgaaatgttctttggttggggggaggatccaggaaagtccaa
gtgcaaattctgactgctgtcatggttcccaaggggaatgaaggtgtgaa
ttctctctgtctccttcctttcaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_84079892_84081037
seq2: B6Ng01-304O18.b_48_1197

seq1  GAATTCTTCCATGTGGCCAGGGTACGTAGCATGGCAGCCCACCTAAGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCATGTGGCCAGGGTACGTAGCATGGCAGCCCACCTAAGGAA  50

seq1  TGACACTTGGAGAGTGTTTTATAAAGGTAAGCATCCCGAAACCTAGCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACTTGGAGAGTGTTTTATAAAGGTAAGCATCCCGAAACCTAGCAGT  100

seq1  GTCACTTCTATCCAACTAATTAAGATAAATGAAAACATGTCTTGATTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTTCTATCCAACTAATTAAGATAAATGAAAACATGTCTTGATTGTT  150

seq1  CTTAGATATGTTAATAATAACCCAATCTGGAAGCAAGAGACTAATGCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGATATGTTAATAATAACCCAATCTGGAAGCAAGAGACTAATGCAAA  200

seq1  AAAAAATCATATATCCACACTCAGGAATAAAGCTAAGCTACTGATATATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATCATATATCCACACTCAGGAATAAAGCTAAGCTACTGATATATA  250

seq1  CACTGGAAACACAGCCGGAGACACAGCTCGAAACACAGCTCCCAGGCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGAAACACAGCCGGAGACACAGCTCGAAACACAGCTCCCAGGCAAG  300

seq1  CTGAACAAAGGAGATGGCCACAAGACTGGCTGCAATGATAGAAGAGAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACAAAGGAGATGGCCACAAGACTGGCTGCAATGATAGAAGAGAACC  350

seq1  TAAGCAGATGATAACTGGCTGGTCGCACAGGTCAGTGGTACGGTGCTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAGATGATAACTGGCTGGTCGCACAGGTCAGTGGTACGGTGCTTGA  400

seq1  CCAACATTCACAAAACCTTGGGACCCATCCTTAACCCAGTAACAGACAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACATTCACAAAACCTTGGGACCCATCCTTAACCCAGTAACAGACAGA  450

seq1  CAACAAAGCCAGACACAGCAGAACACACCTGTAGCCCCAGGTACCTGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAAGCCAGACACAGCAGAACACACCTGTAGCCCCAGGTACCTGGAG  500

seq1  AGGCTAAGACAGAAGGCTCACTGGAGCCTGGACGTTCAAGGCTAGCCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAAGACAGAAGGCTCACTGGAGCCTGGACGTTCAAGGCTAGCCTGG  550

seq1  TCAACACAAATCGAGTCTGTCAAAAGCAAAGCAGTCAACAGTGGCAGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACACAAATCGAGTCTGTCAAAAGCAAAGCAGTCAACAGTGGCAGAAG  600

seq1  ACACTGGCCAGTGATTCTGAGTGCAGAGGCAGGAGTGATGGATGAACGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGGCCAGTGATTCTGAGTGCAGAGGCAGGAGTGATGGATGAACGTG  650

seq1  ATGAAAATGGGTGTGGTGTATATTTTTCAACACTTAGGAACTGTGGACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAATGGGTGTGGTGTATATTTTTCAACACTTAGGAACTGTGGACTG  700

seq1  AAAACGACTGTACTTGATTCCCTGTAAGTTCTAGAGCCACCTAGATGTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACGACTGTACTTGATTCCCTGTAAGTTCTAGAGCCACCTAGATGTAG  750

seq1  AACATTCCATCCAAGCTAATAACAGCTTCATCCTCTCACCCAACTGGGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTCCATCCAAGCTAATAACAGCTTCATCCTCTCACCCAACTGGGCT  800

seq1  GTCTTCCTTCAGCTCTTGTATGCCTGCAGCCTGAGGAGGGAGAGGGAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCCTTCAGCTCTTGTATGCCTGCAGCCTGAGGAGGGAGAGGGAAAG  850

seq1  GCTGACCCTTTCTCTTTTATATCCTCCTTCTCCTTCCAATCCTGGAGTCG  900
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GCTGACCCTTTCTCTTTTATATCCTCCTTCTCTTTCCAATCCTGGAGTCG  900

seq1  GCCTATGGGAGAGAGATATTTATTATGCCCTTGGGTACCAATAAAATAGG  950
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GCCTATGGGAGAGAGATATTTATTATGCCCTTGGGTACC-ATAAAATAGG  949

seq1  ATGTTTGTTGGTTCAGAACTT-GGCATA-TAGTC-TCCTGACCATCTG--  995
      ||| ||||||||||||||||| |||||| ||||| || ||||||||||  
seq2  ATG-TTGTTGGTTCAGAACTTGGGCATATTAGTCTTCTTGACCATCTGGT  998

seq1  TGGAGCATTGCAAATGGCCCTGCTTTCAACCTCCTGC-AGAGATACCTGT  1044
       |||||||||| ||||| ||||||||| |||| |||| ||||||| ||||
seq2  GGGAGCATTGC-AATGGTCCTGCTTTC-ACCTTCTGCAAGAGATA-CTGT  1045

seq1  GGTGTAC-TCTCCATGTCTC-TGGCTGACATGGACCCTTGGTGTCTGGAC  1092
       |||||| |||| ||||||| |||||||||||||| ||||||||||||  
seq2  TGTGTACTTCTCAATGTCTCTTGGCTGACATGGACTCTTGGTGTCTGGGA  1095

seq1  CTCCGGGAGTCT-GCCTCATATAGAACTAGTCTTTG-TCAGATCCAGTCA  1140
      || ||||||||| ||||||| ||| ||||||||||| ||  || ||||||
seq2  CTTCGGGAGTCTGGCCTCAT-TAG-ACTAGTCTTTGTTCGAATTCAGTCA  1143

seq1  CC-CTTC  1146
      || ||||
seq2  CCTCTTC  1150

seq1: chr3_84217511_84218584
seq2: B6Ng01-304O18.g_70_1144 (reverse)

seq1  TCTGAAGGGAAAGGAGACAG-GAGAATCCACACCTTCATCCCCCTTGGGA  49
      |||||| || |||||||||| |||||| ||||||||||| ||||||||||
seq2  TCTGAAAGG-AAGGAGACAGAGAGAATTCACACCTTCATTCCCCTTGGGA  49

seq1  CCAATGACAGCAGTCAGGATTTGCACTTGGGCTTCCTGGGTTCCTCCCCC  99
       | |||||||||||||| |||||||||||| ||| |  || |||||||||
seq2  ACCATGACAGCAGTCAGAATTTGCACTTGGACTTTCCTGGATCCTCCCCC  99

seq1  CACCCAAAGAACATTTCAACAGCACCACCTCCTTCC-AGGTGCCGAACCT  148
      || |||||||||||||| |||||||||||||||||| |||||||||| ||
seq2  CAACCAAAGAACATTTC-ACAGCACCACCTCCTTCCAAGGTGCCGAA-CT  147

seq1  GAGTCCTCAC-AAGCTCACCCTCGCAGCCATTACTTAGCGCCCATCACAG  197
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCTCACAAAGCTCACCCTCGCAGCCATTACTTAGCGCCCATCACAG  197

seq1  ACAAAGGATTCCCCTAACAACAGCAGTCAGCTAGGCAGCCTGAGGCCCTC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGATTCCCCTAACAACAGCAGTCAGCTAGGCAGCCTGAGGCCCTC  247

seq1  TCATGGGCTCATGTCCTTTTCT-CCAGCAAGGACTCTAGACAGCATCAAG  296
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TCATGGGCTCATGTCCTTTTCTCCCAGCAAGGACTCTAGACAGCATCAAG  297

seq1  GAAGCCATGAAGAAAGAAGACAATGTGTATTGTCAGAGGCACAGCATGGG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCATGAAGAAAGAAGACAATGTGTATTGTCAGAGGCACAGCATGGG  347

seq1  CTTAGGAGAAGCCAGGCAGCAGAAAGAGGTATGCCAAGAACTGGGAGGCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGAGAAGCCAGGCAGCAGAAAGAGGTATGCCAAGAACTGGGAGGCA  397

seq1  ACTTCAGATATGATGTCAGCCAGGGAAGGCAGCTCAGAAGATGAGATATT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAGATATGATGTCAGCCAGGGAAGGCAGCTCAGAAGATGAGATATT  447

seq1  GGAGCCAAAAACTACTGATTAAAGAACTGAAGAGGAGGCTGAAAACGAGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCAAAAACTACTGATTAAAGAACTGAAGAGGAGGCTGAAAACGAGA  497

seq1  TAAGGAACAGACAACCAACACCCACTAGCACATCCATCTTGAACAGGAAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAACAGACAACCAACACCCACTAGCACATCCATCTTGAACAGGAAA  547

seq1  AAAGAAAGGAGAGGAAGGGCCAGCCGGCCAGGCTGCTGAGTTATCTGTGT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGGAGAGGAAGGGCCAGCCGGCCAGGCTGCTGAGTTATCTGTGT  597

seq1  CTCACTGAGGGGCTTTTCCTAGAAATCATGCCCTGGCTTCTCATTTATTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTGAGGGGCTTTTCCTAGAAATCATGCCCTGGCTTCTCATTTATTT  647

seq1  ACACATCTGTGGAACTTCATCTCTCGGCCACGGCCAGGGAGTCAGAAAAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATCTGTGGAACTTCATCTCTCGGCCACGGCCAGGGAGTCAGAAAAA  697

seq1  CGTGGAAACTAGTCATTTCTGCAACCACAGGCAAGTAGAAGGCTCCCTGC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGAAACTAGTCATTTCTGCAACCACAGGCAAGTAGAAGGCTCCCTGC  747

seq1  GCCTGGCCCTGTGCTGATTGTGTGGACCAGAAGCCTCCCCTCAGTGGTTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGCCCTGTGCTGATTGTGTGGACCAGAAGCCTCCCCTCAGTGGTTC  797

seq1  TGAGGGTCCAAGTCACCTCAGATTGCGTCTCACCCCAGGGAACCCACCAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGTCCAAGTCACCTCAGATTGCGTCTCACCCCAGGGAACCCACCAT  847

seq1  CCATGCCTCCATGTGTTGGCTCCTTGTGTGACTGTCAGATGGACACACAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCCTCCATGTGTTGGCTCCTTGTGTGACTGTCAGATGGACACACAT  897

seq1  TGTTTTCTGCCCTGAAGGGTAAGATCTGGGATGCTCCTGTTTTCCAAGTG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCTGCCCTGAAGGGTAAGATCTGGGATGCTCCTGTTTTCCAAGTG  947

seq1  TCCACAGTGCATCCAAACATGGCTGCCCAAGGAGGTCCAGTTCTCCTGTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAGTGCATCCAAACATGGCTGCCCAAGGAGGTCCAGTTCTCCTGTT  997

seq1  ACCTCACTTGGAAAATAGATCTTTGCCCACGATGGGGTGGCATTAGAGAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCACTTGGAAAATAGATCTTTGCCCACGATGGGGTGGCATTAGAGAT  1047

seq1  CTGAAGACGGGGTTAACCTGGAGAATTC  1074
      ||||||||||||||||||||||||||||
seq2  CTGAAGACGGGGTTAACCTGGAGAATTC  1075