BAC Information

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BAC

Clone NameB6Ng01-305C03
Chromosome3 (Build37)
Map Location 81,987,427 - 82,115,748
singlet/doubletdoublet
Overlap genenone
Upstream genePdgfc, LOC229443, LOC100041901, Ctso, Tdo2, Accn5, Gucy1b3, Gucy1a3
Downstream geneMtap9, Npy2r, LOC100041940, EG633285, Lrat, Fgg, Fga, Fgb, Plrg1, EG627094, Dchs2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-305C03.bB6Ng01-305C03.g
ACCGA098501GA098502
length1,1931,143
definitionB6Ng01-305C03.b B6Ng01-305C03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,987,427 - 81,988,618)(82,114,602 - 82,115,748)
sequence
gaattcaaatgtacaatgaaaatgatgttgacttttgtctggacggttca
ggctgtttgaaaagaaggcattatctgtgggttgggagtctaagttatag
gaagcagataccttggctttgcctgaaaacccagaaactcctactggtgg
ccctggacaagtctcctgggactcatttgtaataaaaatatgagaaggtt
gtcaactgaaagagcttcagaagaacttgctgaaacttggtgctgtaagc
agtctcctcatgtgctcataaacaaaaatgcctgagtggatggaagagcc
agtgccttactgatcatcaggacagaggtcagcaaagaccaacttagatc
caactctccgatcatatccaatgagcagggtgaaaaccactagtctttct
caaaatggctttcacgcagcccagatttccataggcttctccttgtttaa
aaaagactcgacccttagctgagagctggtcttcaaagggagaacgagtc
atgtcaaaaatgtcaaatttattttgtgagacttggcaagagagtttgca
ttttctccctattttatgagatctcaaaatagttttaggaattcccccca
ctagactgaatattataataccaacatagttttaaagctcttaacagctc
ccaacagctcttgtctgggatctgcagctttggtgtgaacttcccgaata
tggaatgaagccactgtgcctcagatttgtacatgaacgaggaaacacgt
taactggcattttccaagattcattgttgtcatgggtcaaactgagaatc
aaacctaattatctgagtcactccttaatcctttcttgggcactttatgt
tgagtactggggaaaggtctcagggatgtcaacctttagtcttcttcaga
aacaaatgtctgcctcctgaaaataatgtttgtaggtcatgtggattttt
ttaaacttacaagtaaataaaaatatcacagacccaatttaactagacca
aagtttatacaagtacagttaagaaataggctttgaatgaaactgtgagt
ttcccattaacatttgtaatttcaatataacattaatatttatgccactt
tattcacaactaacccaaatattggtattgaacacaacctgaaaaccagg
taactctaatgcttccctaatgggtgtccattacctgactcag
gaattctctctctagagctcagatatcgctggtggattctgaactagaat
ccaatccagagttactacatctcgactccattttaggacaatgaattatt
caagtgacagataacatgtgtaaagagtgcccttcacagttacgaaggga
aaggaaagggcttgagaatatgctactctggcttctgtctcaattttagc
taccactactacatgcttgatctaatcaaagtgtgtattttcttcaagga
ggaaatgatgatacgagtctactggatgtttctttcaaattaacaaaaaa
tagtattatttatggaattcgaaagtctcacttcaatataactgaaggta
aaaacaacattaaaagtacctataagttttaaaaatactttttcactcat
tcaactatttatcacctattttctttgaagaaatgattgtttttaggccc
aaaagaacaaaaacagatatttaacaaggaagtcacagtttctgttgtct
ggatcttccattctagtttgactcagaggccttatcaataggcattagct
tgtgtgtctggtttgatagctttaaagcttatgttactggacattaaacc
ttcatttgttaagagttagaagttgattggagatagaagactaagagaat
ccagaatagcaaatttattttataattggcaaagtttgaccttagtaata
ttctaaccctcatttctggtataatcttgttcataagaaataataagcaa
aagatagatatcatacatgtataattaaatatatttaattgcatatatac
attctacttagtattgatatcattttcaactttggaagctgttccttatc
ttgcagaaaaattaagacatttggtctttcatatgaagaaaaagttaagt
catttagagtccaattcaataatctctgaatgattgtttttattttcatg
ccattatgaaatttccaaatgggttttcaaagtacagaagtcaaagactt
gagtacaaacattaacaaagcagagacatgttgtaggagcagagaaatcc
ccaaacaagaaaaattccaggtaaatggtgtattttttgaatgagaactt
caagtcttaaggctatggaattacgtgagccattctggcatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_81987427_81988618
seq2: B6Ng01-305C03.b_46_1238

seq1  GAATTCAAATGTACAATGAAAATGATGTTGACTTTTGTCTGGACGGTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATGTACAATGAAAATGATGTTGACTTTTGTCTGGACGGTTCA  50

seq1  GGCTGTTTGAAAAGAAGGCATTATCTGTGGGTTGGGAGTCTAAGTTATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTTTGAAAAGAAGGCATTATCTGTGGGTTGGGAGTCTAAGTTATAG  100

seq1  GAAGCAGATACCTTGGCTTTGCCTGAAAACCCAGAAACTCCTACTGGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGATACCTTGGCTTTGCCTGAAAACCCAGAAACTCCTACTGGTGG  150

seq1  CCCTGGACAAGTCTCCTGGGACTCATTTGTAATAAAAATATGAGAAGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGACAAGTCTCCTGGGACTCATTTGTAATAAAAATATGAGAAGGTT  200

seq1  GTCAACTGAAAGAGCTTCAGAAGAACTTGCTGAAACTTGGTGCTGTAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACTGAAAGAGCTTCAGAAGAACTTGCTGAAACTTGGTGCTGTAAGC  250

seq1  AGTCTCCTCATGTGCTCATAAACAAAAATGCCTGAGTGGATGGAAGAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCCTCATGTGCTCATAAACAAAAATGCCTGAGTGGATGGAAGAGCC  300

seq1  AGTGCCTTACTGATCATCAGGACAGAGGTCAGCAAAGACCAACTTAGATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCTTACTGATCATCAGGACAGAGGTCAGCAAAGACCAACTTAGATC  350

seq1  CAACTCTCCGATCATATCCAATGAGCAGGGTGAAAACCACTAGTCTTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCTCCGATCATATCCAATGAGCAGGGTGAAAACCACTAGTCTTTCT  400

seq1  CAAAATGGCTTTCACGCAGCCCAGATTTCCATAGGCTTCTCCTTGTTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGGCTTTCACGCAGCCCAGATTTCCATAGGCTTCTCCTTGTTTAA  450

seq1  AAAAGACTCGACCCTTAGCTGAGAGCTGGTCTTCAAAGGGAGAACGAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACTCGACCCTTAGCTGAGAGCTGGTCTTCAAAGGGAGAACGAGTC  500

seq1  ATGTCAAAAATGTCAAATTTATTTTGTGAGACTTGGCAAGAGAGTTTGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAAAAATGTCAAATTTATTTTGTGAGACTTGGCAAGAGAGTTTGCA  550

seq1  TTTTCTCCCTATTTTATGAGATCTCAAAATAGTTTTAGGAATTCCCCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCCCTATTTTATGAGATCTCAAAATAGTTTTAGGAATTCCCCCCA  600

seq1  CTAGACTGAATATTATAATACCAACATAGTTTTAAAGCTCTTAACAGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACTGAATATTATAATACCAACATAGTTTTAAAGCTCTTAACAGCTC  650

seq1  CCAACAGCTCTTGTCTGGGATCTGCAGCTTTGGTGTGAACTTCCCGAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAGCTCTTGTCTGGGATCTGCAGCTTTGGTGTGAACTTCCCGAATA  700

seq1  TGGAATGAAGCCACTGTGCCTCAGATTTGTACATGAACGAGGAAACACGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATGAAGCCACTGTGCCTCAGATTTGTACATGAACGAGGAAACACGT  750

seq1  TAACTGGGCATTTTCCAAGATTCATTGTTGTCATGGGTCAAACTGAGAAT  800
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACT-GGCATTTTCCAAGATTCATTGTTGTCATGGGTCAAACTGAGAAT  799

seq1  CAAACCTAATTATCTGAGTCACTCCTTAATCCTTTCTTGGGCACTTTATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCTAATTATCTGAGTCACTCCTTAATCCTTTCTTGGGCACTTTATG  849

seq1  TTGAGTACTGGGG-AAGGTCTCAGGGATGTCAACCTTTAGTCTTCTTCAG  899
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTGAGTACTGGGGAAAGGTCTCAGGGATGTCAACCTTTAGTCTTCTTCAG  899

seq1  AAACAAATGTCTGCCTCCTGAAAATAATGTTTGTAGGTCATGTGGATTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAATGTCTGCCTCCTGAAAATAATGTTTGTAGGTCATGTGGATTTT  949

seq1  TTTAAACTTACAAGTAAATAAAAATATCACAGACCAAATTTAACTAGACC  999
      ||||||||||||||||||||||||||||||||||| |||||||||||| |
seq2  TTTAAACTTACAAGTAAATAAAAATATCACAGACCCAATTTAACTAGA-C  998

seq1  CAAAGTTTATACAAGTACAGTTA--GAATAGGCTTTTGGAATGGAAACTG  1047
      |||||||||||||||||||||||   ||||||||||  |||| |||||||
seq2  CAAAGTTTATACAAGTACAGTTAAGAAATAGGCTTT--GAAT-GAAACTG  1045

seq1  TGGAGGTTCCCATT-ACATTTGTAATTTCAATAT-ACATT-ATATTTATG  1094
      | ||| |||||||| ||||||||||||||||||| ||||| |||||||||
seq2  T-GAGTTTCCCATTAACATTTGTAATTTCAATATAACATTAATATTTATG  1094

seq1  -CAC-TTATCCACCACCAAACCCAAATAT--GTAT--GACACAAACTAGA  1138
       ||| |||| || || | |||||||||||  ||||   |||||| || ||
seq2  CCACTTTATTCA-CAACTAACCCAAATATTGGTATTGAACACAACCT-GA  1142

seq1  AAAACAATTTACTCTATATCCTTTCTCATAATGTGTGTCCATTACCTGAC  1188
      ||| ||  | |||||| || |||   | ||||| ||||||||||||||||
seq2  AAACCAGGTAACTCTA-ATGCTT--CCCTAATGGGTGTCCATTACCTGAC  1189

seq1  TCAG  1192
      ||||
seq2  TCAG  1193

seq1: chr3_82114602_82115748
seq2: B6Ng01-305C03.g_68_1210 (reverse)

seq1  GTATGCAGAAATGGCTTCACGTATATCCCATAGGCTTAAGACCTTGGAGT  50
      ||||||   |||||| ||||||| || |||||| ||||||| |||| |||
seq2  GTATGCCAGAATGGC-TCACGTA-ATTCCATAGCCTTAAGA-CTTGAAGT  47

seq1  TCTCATGTCAAAAATACA-CATTTACTTGGGATTTTTCTTGTTTGGGGGT  99
      ||||||   ||||||||| ||||||| ||| ||||||||||||| |||| 
seq2  TCTCATTCAAAAAATACACCATTTACCTGGAATTTTTCTTGTTT-GGGGA  96

seq1  TTTCTCTGCTCCCTAC-ACATGTCTCTGCTTTGTTAATGTTTGTACTCAA  148
      |||||||||| ||||| |||||||||||||||||||||||||||||||||
seq2  TTTCTCTGCT-CCTACAACATGTCTCTGCTTTGTTAATGTTTGTACTCAA  145

seq1  GTCTTTGACTTCTGTACTTTGAAAACCCATTTGGAAATTTCATAATGGCA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGACTTCTGTACTTTGAAAACCCATTTGGAAATTTCATAATGGCA  195

seq1  TTGAAAATAAAAACAATCATTCAGAGATTATTGAATTGGACTCTAAATGA  248
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TGAAAATAAAAACAATCATTCAGAGATTATTGAATTGGACTCTAAATGA  244

seq1  CTTAACTTTTTCTTCATATGAAAGACCAAATGTCTTAATTTTTCTGCAAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACTTTTTCTTCATATGAAAGACCAAATGTCTTAATTTTTCTGCAAG  294

seq1  ATAAGGAACAGCTTCCAAAGTTGAAAATGATATCAATACTAAGTAGAATG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGAACAGCTTCCAAAGTTGAAAATGATATCAATACTAAGTAGAATG  344

seq1  TATATATGCAATTAAATATATTTAATTATACATGTATGATATCTATCTTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATGCAATTAAATATATTTAATTATACATGTATGATATCTATCTTT  394

seq1  TGCTTATTATTTCTTATGAACAAGATTATACCAGAAATGAGGGTTAGAAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTATTATTTCTTATGAACAAGATTATACCAGAAATGAGGGTTAGAAT  444

seq1  ATTACTAAGGTCAAACTTTGCCAATTATAAAATAAATTTGCTATTCTGGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTAAGGTCAAACTTTGCCAATTATAAAATAAATTTGCTATTCTGGA  494

seq1  TTCTCTTAGTCTTCTATCTCCAATCAACTTCTAACTCTTAACAAATGAAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTAGTCTTCTATCTCCAATCAACTTCTAACTCTTAACAAATGAAG  544

seq1  GTTTAATGTCCAGTAACATAAGCTTTAAAGCTATCAAACCAGACACACAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAATGTCCAGTAACATAAGCTTTAAAGCTATCAAACCAGACACACAA  594

seq1  GCTAATGCCTATTGATAAGGCCTCTGAGTCAAACTAGAATGGAAGATCCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATGCCTATTGATAAGGCCTCTGAGTCAAACTAGAATGGAAGATCCA  644

seq1  GACAACAGAAACTGTGACTTCCTTGTTAAATATCTGTTTTTGTTCTTTTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACAGAAACTGTGACTTCCTTGTTAAATATCTGTTTTTGTTCTTTTG  694

seq1  GGCCTAAAAACAATCATTTCTTCAAAGAAAATAGGTGATAAATAGTTGAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTAAAAACAATCATTTCTTCAAAGAAAATAGGTGATAAATAGTTGAA  744

seq1  TGAGTGAAAAAGTATTTTTAAAACTTATAGGTACTTTTAATGTTGTTTTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGAAAAAGTATTTTTAAAACTTATAGGTACTTTTAATGTTGTTTTT  794

seq1  ACCTTCAGTTATATTGAAGTGAGACTTTCGAATTCCATAAATAATACTAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCAGTTATATTGAAGTGAGACTTTCGAATTCCATAAATAATACTAT  844

seq1  TTTTTGTTAATTTGAAAGAAACATCCAGTAGACTCGTATCATCATTTCCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTAATTTGAAAGAAACATCCAGTAGACTCGTATCATCATTTCCT  894

seq1  CCTTGAAGAAAATACACACTTTGATTAGATCAAGCATGTAGTAGTGGTAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAAGAAAATACACACTTTGATTAGATCAAGCATGTAGTAGTGGTAG  944

seq1  CTAAAATTGAGACAGAAGCCAGAGTAGCATATTCTCAAGCCCTTTCCTTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATTGAGACAGAAGCCAGAGTAGCATATTCTCAAGCCCTTTCCTTT  994

seq1  CCCTTCGTAACTGTGAAGGGCACTCTTTACACATGTTATCTGTCACTTGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCGTAACTGTGAAGGGCACTCTTTACACATGTTATCTGTCACTTGA  1044

seq1  ATAATTCATTGTCCTAAAATGGAGTCGAGATGTAGTAACTCTGGATTGGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTCATTGTCCTAAAATGGAGTCGAGATGTAGTAACTCTGGATTGGA  1094

seq1  TTCTAGTTCAGAATCCACCAGCGATATCTGAGCTCTAGAGAGAGAATTC  1147
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGTTCAGAATCCACCAGCGATATCTGAGCTCTAGAGAGAGAATTC  1143