BAC Information

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BAC

Clone NameB6Ng01-305D13
Chromosome3 (Build37)
Map Location 83,936,164 - 83,937,305
singlet/doubletsinglet
Overlap geneMnd1
Upstream geneDchs2, 1700028M03Rik, LOC100042007, LOC100042091, Sfrp2, LOC633522, Tlr2, D930015E06Rik
Downstream geneTrim2, EG624713, 6330505N24Rik, Arfip1, EG667788, EG627369, Tigd4, Tmem154, LOC624889, Fbxw7, Dear1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-305D13.bB6Ng01-305D13.g
ACCGA098567GA098568
length1,1311,242
definitionB6Ng01-305D13.b B6Ng01-305D13.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgccctgaccatggattccaaaatctcttcagtattatattttc
aagtcgttggatacaaggggtttatacatcaacactgaagaaaccaatga
aaagtcagcaaaagattaaaataaaactctatcttctcccatacagatgg
cactcacgtataaattggagccccacaccacagcatcggagagctgcaaa
cagaaacaatgaaataccaccacaggctggttatgttgttaagacaaaca
catatcatctactgaccatggcgctgtgcaatgacaggaaaactcagtct
ccacagatgaaaatgtacaacagtgcatctacactggacggcacacaaaa
cacactaaccacataatccagaaatgagggccctcggtacccaaataagt
tgaaagcatacactagacaaaagcatggacacaaaggtctaatagcagat
cttttttataacctggaagcatccaagatgtccaaaagctcaatgcatgt
attgagatatattgaatgtgataaaatgtattcactgataagaaaaatga
gctatcaaacctctgaagacacagtggaacctcaaatgcatcttgttaag
cacaagaagccaatctgaaggctgcagcacggatggtttcatttgccacg
tgcaagtctggaaaagtaaaactctaaagacataaaaggccagctgcctc
ctgaggcaggactgccgtgtgaggggcctgggttacagagaggtcctgtc
ttaaacagagcaagagcagtgggctagagctgaaggaccagaaggaagaa
caagcaaagtaaggaggtgtctcacacagtgacactgctggggaagacac
tgtacttatagacacaggaaatcatgcatttcccaaaatctgtaggttgg
tagcacacacttataatcctaacacttgggaggtgaaggcagaataatca
tgggtcaaaatctcctcaaatgcaaagcaagattatggctggcctaagcc
acagacattgtctcaaaaaaataaaaaatacaccagaagcaagacacaat
taacaaaatctcacagtaagcaaaaccacaagaacctcatcatccccaga
tcatgtaaatgcaaacacagtgatgtatgct
gaattcaaccccacagagttccctggcagcctcctgtggaggtggaaatg
gtccatgggcactgggaaatgaagagaaagacactgtccgtctcctgggc
tggaaaatgggcacatgggaaggggtaagaaacaagggttgtctggtgta
tgtaaacagtactgtcagcgacataagatctagtctcagttcacgtgtat
cttacgttttccttctctaagccacagaagcaattgaaagtattgtgtct
ctattagtcaagaagcatacaatgctgcccgctctttacaggttgaaaca
tctttgttgggtggcgaaataattcaagatagctagaagactcttgtttg
cgttctccctcccttgtccttgggccgaggctcttgtattttgacttggc
tctgtattgtttctgttccgtttgatttgacatatattaaccatacatat
ttatggggtataatgtaatgttttatacatatttatcttctgtaactatc
aagctgtgctaattagcatattataatttcaagctttagtaatttttttg
tgacaggaccatttgaaatcctctcttctagtcattttaaaatgcaatac
atcttgttaactgtagtcatcctgtgggagcaccaggatttatttctccc
atctacatattttttgccagtgacaaatcttaccctgttttctttcccct
cttctctcgcagtctttgaggaccaaagtctgctttctccttctgggacg
tcaggtctcaggttctgcgtgagtgaggtcatgcagagttttctttttgt
gctcagcctatttcctgagggtccttccaggttccaacctgttattgaat
gacaggatttttattctttgttatacccaaagcatatcccattatccagg
taacaatttttcttcatccatttcatctggtcagtggcacaattaggttg
gattcccatttttggtacaaaaacaatggggtactgggtgtcttttttta
ccttggattttcttttccggttggctattctaacccaggggtgaaacttt
ttaagatcatacacgttctttgtttccagaattttttgagggaaatgcct
gtaactgttttcaacataggctaacagttcattttacatttccaggcaaa
ccatgtgtgcagaagatcagttcttctcagtcattcagaagggtgggtgc
ttctttggcccttctttgtgatctcaccgagaacacatttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_83936164_83937305
seq2: B6Ng01-305D13.b_46_1176

seq1  GAATTCTGCCCTGACCATGGATTCCAAAATCTCTTCAGTATTATATTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCCTGACCATGGATTCCAAAATCTCTTCAGTATTATATTTTC  50

seq1  AAGTCGTTGGATACAAGGGGTTTATACATCAACACTGAAGAAACCAATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCGTTGGATACAAGGGGTTTATACATCAACACTGAAGAAACCAATGA  100

seq1  AAAGTCAGCAAAAGATTAAAATAAAACTCTATCTTCTCCCATACAGATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCAGCAAAAGATTAAAATAAAACTCTATCTTCTCCCATACAGATGG  150

seq1  CACTCACGTATAAATTGGAGCCCCACACCACAGCATCGGAGAGCTGCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCACGTATAAATTGGAGCCCCACACCACAGCATCGGAGAGCTGCAAA  200

seq1  CAGAAACAATGAAATACCACCACAGGCTGGTTATGTTGTTAAGACAAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACAATGAAATACCACCACAGGCTGGTTATGTTGTTAAGACAAACA  250

seq1  CATATCATCTACTGACCATGGCGCTGTGCAATGACAGGAAAACTCAGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCATCTACTGACCATGGCGCTGTGCAATGACAGGAAAACTCAGTCT  300

seq1  CCACAGATGAAAATGTACAACAGTGCATCTACACTGGACGGCACACAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGATGAAAATGTACAACAGTGCATCTACACTGGACGGCACACAAAA  350

seq1  CACACTAACCACATAATCCAGAAATGAGGGCCCTCGGTACCCAAATAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTAACCACATAATCCAGAAATGAGGGCCCTCGGTACCCAAATAAGT  400

seq1  TGAAAGCATACACTAGACAAAAGCATGGACACAAAGGTCTAATAGCAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCATACACTAGACAAAAGCATGGACACAAAGGTCTAATAGCAGAT  450

seq1  CTTTTTTATAACCTGGAAGCATCCAAGATGTCCAAAAGCTCAATGCATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTATAACCTGGAAGCATCCAAGATGTCCAAAAGCTCAATGCATGT  500

seq1  ATTGAGATATATTGAATGTGATAAAATGTATTCACTGATAAGAAAAATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGATATATTGAATGTGATAAAATGTATTCACTGATAAGAAAAATGA  550

seq1  GCTATCAAACCTCTGAAGACACAGTGGAACCTCAAATGCATCTTGTTAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCAAACCTCTGAAGACACAGTGGAACCTCAAATGCATCTTGTTAAG  600

seq1  CACAAGAAGCCAATCTGAAGGCTGCAGCACGGATGGTTTCATTTGCCACG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGAAGCCAATCTGAAGGCTGCAGCACGGATGGTTTCATTTGCCACG  650

seq1  TGCAAGTCTGGAAAAGTAAAACTCTAAAGACATAAAAGGCCAGCTGCCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGTCTGGAAAAGTAAAACTCTAAAGACATAAAAGGCCAGCTGCCTC  700

seq1  CTGAGGCAGGACTGCCGTGTGAGGGGCCTGGGTTACAGAGAGGTCCTGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGCAGGACTGCCGTGTGAGGGGCCTGGGTTACAGAGAGGTCCTGTC  750

seq1  TTAAACAGAGCAAGAGCAGTGGGCTAGAGCTGAAGGACCAGAAGGAAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACAGAGCAAGAGCAGTGGGCTAGAGCTGAAGGACCAGAAGGAAGAA  800

seq1  CAAGCAAAGTAAGGAGGTGTCTCACACAGTGACACTGCTGGGGAAGACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAAAGTAAGGAGGTGTCTCACACAGTGACACTGCTGGGGAAGACAC  850

seq1  TGTACTTATAGACACAGGAAATCATGCATTTCCCAAAATCTGTAGGTTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTATAGACACAGGAAATCATGCATTTCCCAAAATCTGTAGGTTGG  900

seq1  TAGCACACACTTATAATCCTAACACTTGGGAGGTGAAGGCAGAATAATCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACACACTTATAATCCTAACACTTGGGAGGTGAAGGCAGAATAATCA  950

seq1  TGGGTCAAAAATCTCCTCAAATGCAAAGCAAGATTATGGCTGGCCTAAGC  1000
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTC-AAAATCTCCTCAAATGCAAAGCAAGATTATGGCTGGCCTAAGC  999

seq1  CACAAGACATTGTCTCAAAAAAATAAAAAATACACCAGAAAGCAAAAGAA  1050
      ||| |||||||||||||||||||||||||||||||||| |||||| |   
seq2  CAC-AGACATTGTCTCAAAAAAATAAAAAATACACCAG-AAGCAAGA---  1044

seq1  CAACAATAACAAAAATCTCACAGTAAAGCAAAA-CACAAGAACCTCATTC  1099
        ||||| |  ||||||||||||| |||||||| ||||||||||||||  
seq2  -CACAATTAACAAAATCTCACAGT-AAGCAAAACCACAAGAACCTCAT--  1090

seq1  AATCCCCAGATCATGTAAAATGCCAAACACAGTGATGTATGCT  1142
       ||||||||||||||| ||||| ||||||||||||||||||||
seq2  CATCCCCAGATCATGT-AAATG-CAAACACAGTGATGTATGCT  1131