BAC Information

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BAC

Clone NameB6Ng01-305F02
Chromosome3 (Build37)
Map Location 79,186,794 - 79,333,669
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041691, LOC383883, LOC100041748, LOC100041716, LOC100041725, LOC100041766, Rapgef2, LOC100041741
Downstream geneLOC100041793, LOC667613, Ppid, Etfdh, 4930579G24Rik, Rxfp1, Tmem144, 1110032E23Rik, EG626797
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-305F02.bB6Ng01-305F02.g
ACCGA098637GA098638
length1,1311,040
definitionB6Ng01-305F02.b B6Ng01-305F02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,186,794 - 79,187,929)(79,332,641 - 79,333,669)
sequence
gaattctacatatgacatactaccttgttctgtgcacagctggcttattt
tgtgtcgtgtaatcaaccccagtaccatttacaatgttgcatgtgacaag
atcccatcattttttggctgaatcgtatgaatggaccgagttgcctttat
ttgtcagatgggggacactcactctgtcttcattacatccctattgtgcc
tagttctaaggtgaaataggagcacagaagtctctttggttctggaactg
tacaagctacaattttagcatctataattagaaatctaaagcagaaaaca
acactattgctaattaacactgtaaaagctccttggggcttctgcccctt
cagaagtagctgcgacagtggccagcagtgattctcaaacatcagtatcc
ctttgcagatgatcagactgtctgagaacatgagcctaaaattgtgccct
tagttcttagatgatgcttatgctattggttgtgagaccacaatttgaga
cccattggtaaagtgaacgagtcgatacagtgctgcagaagacaccatgc
tataatcaggacactgcagagtattgacatgagccacgagcggcaactta
ttcctgctttaggaagccaattatgaacagtatctctttctggcttcata
ttcagtgacatcacattgatggtttgaaagaggctctatcaggtatagta
tactatattttgtttcctgtttttatcaatgcttattagctgaaaataac
aggtttcattaggatattttttaactgtatatgatgtattttgatcatat
tcacccaccaccctctcttgtctcttccccccacttccgcaagctccttt
acttctctcaagggtaaaagttgaagccacagccttttccctcgagggct
gcttttaaacattttacatttatctgatgtctaacctaaagggccctcta
atgcatttcattcatgttttaaaggatacgtctgagaacctggctgcaac
aacaatagcaatatttttttcaatacaatgtgtgaaaggcttgaaaaggt
ggtatttgtgaaataaagtatattctggataaaggagacaatgactgtgt
tcgtacacttaatgtctgggccaggatagcc
gaattcatttcaggtaaaaccagttgcctcatctgctctgttccccttcc
ttcaaccttaaaaatgcatgtgtgggctggtaagatggctcagcagataa
aggtgcttgctgtgaatcttcacagcctgagttcagtctatagctctcat
agtagaaggagagcacagactccccacaaagtgtcttctgacctccagat
gatgctatggagtgtgtgtgtgtgtgtgtgtgccacacagacataaataa
aaggaaatctatctctgtgtttatctatctatctatatgcatatatttgt
tacttactgtatttttctggcttgcagaattcattttagagtcttgacta
accccagtggtagttttacattattgacaagagcttgcaccgttgggatc
tggccctagattgctcactgtttgctgaagtcgtgtggcagtcagagaaa
tgtacagttcactttctgcacttacacaccttacattgtttgtttcaggt
cttagttgagcatattaatgagctgaggccttttatttacttgcttttgt
ctccttcatgcttttccattatgtgaaaaaggaaagacccaatgagtaca
acagtcatgtgggatacataggtagcactgggcccgggactgccagtact
gcagcagcccagtgcagaaagtgcatcctagttcatagaattccataatc
atggtttgctaataaagaattctttcctaagagcgcaattgaaatctggt
aaatttgcagtatgcagggtatatggtatagttttcaaatagttgtttct
aacctctttctttaaatgtagattgtagcaaagctgctgatttttaattt
ttcatttttttccttgaaaaacgctgagaaagccatcgaattgttcccga
gggatcttgggaattgtttgccagctgtatatgagaaattactcttctca
gaccctaagagaaagggtggccctggcctcgtctgtcatttggagtggag
aggaactgaagttaaacacttcagaagcccattgtgcttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_79186794_79187929
seq2: B6Ng01-305F02.b_47_1177

seq1  GAATTCTACATATGACATACTACCTTGTTCTGTGCACAGCTGGCTTATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACATATGACATACTACCTTGTTCTGTGCACAGCTGGCTTATTT  50

seq1  TGTGTCGTGTAATCAACCCCAGTACCATTTACAATGTTGCATGTGACAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCGTGTAATCAACCCCAGTACCATTTACAATGTTGCATGTGACAAG  100

seq1  ATCCCATCATTTTTTGGCTGAATCGTATGAATGGACCGAGTTGCCTTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCATCATTTTTTGGCTGAATCGTATGAATGGACCGAGTTGCCTTTAT  150

seq1  TTGTCAGATGGGGGACACTCACTCTGTCTTCATTACATCCCTATTGTGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAGATGGGGGACACTCACTCTGTCTTCATTACATCCCTATTGTGCC  200

seq1  TAGTTCTAAGGTGAAATAGGAGCACAGAAGTCTCTTTGGTTCTGGAACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCTAAGGTGAAATAGGAGCACAGAAGTCTCTTTGGTTCTGGAACTG  250

seq1  TACAAGCTACAATTTTAGCATCTATAATTAGAAATCTAAAGCAGAAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGCTACAATTTTAGCATCTATAATTAGAAATCTAAAGCAGAAAACA  300

seq1  ACACTATTGCTAATTAACACTGTAAAAGCTCCTTGGGGCTTCTGCCCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTATTGCTAATTAACACTGTAAAAGCTCCTTGGGGCTTCTGCCCCTT  350

seq1  CAGAAGTAGCTGCGACAGTGGCCAGCAGTGATTCTCAAACATCAGTATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTAGCTGCGACAGTGGCCAGCAGTGATTCTCAAACATCAGTATCC  400

seq1  CTTTGCAGATGATCAGACTGTCTGAGAACATGAGCCTAAAATTGTGCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCAGATGATCAGACTGTCTGAGAACATGAGCCTAAAATTGTGCCCT  450

seq1  TAGTTCTTAGATGATGCTTATGCTATTGGTTGTGAGACCACAATTTGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCTTAGATGATGCTTATGCTATTGGTTGTGAGACCACAATTTGAGA  500

seq1  CCCATTGGTAAAGTGAACGAGTCGATACAGTGCTGCAGAAGACACCATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTGGTAAAGTGAACGAGTCGATACAGTGCTGCAGAAGACACCATGC  550

seq1  TATAATCAGGACACTGCAGAGTATTGACATGAGCCACGAGCGGCAACTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATCAGGACACTGCAGAGTATTGACATGAGCCACGAGCGGCAACTTA  600

seq1  TTCCTGCTTTAGGAAGCCAATTATGAACAGTATCTCTTTCTGGCTTCATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGCTTTAGGAAGCCAATTATGAACAGTATCTCTTTCTGGCTTCATA  650

seq1  TTCAGTGACATCACATTGATGGTTTGAAAGAGGCTCTATCAGGTATAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGACATCACATTGATGGTTTGAAAGAGGCTCTATCAGGTATAGTA  700

seq1  TACTATATTTTGTTTCCTGTTTTTATCAATGCTTATTAGCTGAAAATAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATATTTTGTTTCCTGTTTTTATCAATGCTTATTAGCTGAAAATAAC  750

seq1  AGGTTTCATTAGGATATTTTTTAACTGTATATGATGTATTTTGATCATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTCATTAGGATATTTTTTAACTGTATATGATGTATTTTGATCATAT  800

seq1  TCACCCACCACCCTCTCTTGTCTCTTCCCCCCACTTCCGCAAGCTCCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCACCACCCTCTCTTGTCTCTTCCCCCCACTTCCGCAAGCTCCTTT  850

seq1  ACTTCTCTCAAGGGTTAAAAGTTGAAGCCACAGCCTTTTCCCTCGAGGGC  900
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ACTTCTCTCAAGGG-TAAAAGTTGAAGCCACAGCCTTTTCCCTCGAGGGC  899

seq1  TGCTTTTAAACATTTTACATTTATCTGATGTCTAACCTAAGGGGCCCTCT  950
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGCTTTTAAACATTTTACATTTATCTGATGTCTAACCTAAAGGGCCCTCT  949

seq1  AATGCATTTCATTCATGTTTTAAAGGATACGTCTTGAG-ACCTGGCTGC-  998
      ||||||||||||||||||||||||||||||||| |||| |||||||||| 
seq2  AATGCATTTCATTCATGTTTTAAAGGATACGTC-TGAGAACCTGGCTGCA  998

seq1  ACAAC-ATAGCAATATTTTTTCAATTACAATGTGTTGAAAAGGCTTGAAA  1047
      ||||| |||||||||||||||  | ||||||||||   ||||||||||||
seq2  ACAACAATAGCAATATTTTTTTCAATACAATGTGT--GAAAGGCTTGAAA  1046

seq1  A-GTGGAATTTGTGAAATAAAGTATATTCTTGGATTAAAGGAGACAATGA  1096
      | |||| |||||||||||||||||||||| |||| |||||||||||||| 
seq2  AGGTGGTATTTGTGAAATAAAGTATATTC-TGGA-TAAAGGAGACAATG-  1093

seq1  ACTGTGTTCGTACACTAAATGTCTGGGCCAAGGAATAGCC  1136
      |||||||||||||||| |||||||||||||  | ||||||
seq2  ACTGTGTTCGTACACTTAATGTCTGGGCCA--GGATAGCC  1131

seq1: chr3_79332641_79333669
seq2: B6Ng01-305F02.g_67_1105 (reverse)

seq1  AAGCACAATTGGC-TCTGAAGTGTTT-ACTTCAGTTCCTCTCCACTCC-A  47
      ||||||||| ||| |||||||||||| ||||||||||||||||||||| |
seq2  AAGCACAATGGGCTTCTGAAGTGTTTAACTTCAGTTCCTCTCCACTCCAA  50

seq1  ATGACAAGACGAGGCCA-GGCCACCCTTTCTCTTA-GGTTTGAG-AGAGT  94
      ||||| ||||||||||| ||||||||||||||||| ||| |||| |||||
seq2  ATGAC-AGACGAGGCCAGGGCCACCCTTTCTCTTAGGGTCTGAGAAGAGT  99

seq1  -ATTTCTCATATACAGCTGGCAAAC-ATTCCCAAGATCCCTCGGGAACAA  142
       |||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AATTTCTCATATACAGCTGGCAAACAATTCCCAAGATCCCTCGGGAACAA  149

seq1  TTCGATGGC-TTCTCAGCGTTTT--CAGGAAAAAAATGAAAAATTAAAAA  189
      ||||||||| |||||||||||||   ||||||||||||||||||||||||
seq2  TTCGATGGCTTTCTCAGCGTTTTTCAAGGAAAAAAATGAAAAATTAAAAA  199

seq1  TCAGCAGCTTTGCTACAATCTACATTTAAAGAAAGAGGTTAGAAACAACT  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGCTTTGCTACAATCTACATTTAAAGAAAGAGGTTAGAAACAACT  249

seq1  ATTTGAAAACTATACCATATACCCTGCATACTGCAAATTTACCAGATTTC  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAAACTATACCATATACCCTGCATACTGCAAATTTACCAGATTTC  299

seq1  AATTGCGCTCTTAGGAAAGAATTCTTTATTAGCAAACCATGATTATGGAA  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCGCTCTTAGGAAAGAATTCTTTATTAGCAAACCATGATTATGGAA  349

seq1  TTCTATGAACTAGGATGCACTTTCTGCACTGGGCTGCTGCAGTACTGGCA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGAACTAGGATGCACTTTCTGCACTGGGCTGCTGCAGTACTGGCA  399

seq1  GTCCCGGGCCCAGTGCTACCTATGTATCCCACATGACTGTTGTACTCATT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCGGGCCCAGTGCTACCTATGTATCCCACATGACTGTTGTACTCATT  449

seq1  GGGTCTTTCCTTTTTCACATAATGGAAAAGCATGAAGGAGACAAAAGCAA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTTTCCTTTTTCACATAATGGAAAAGCATGAAGGAGACAAAAGCAA  499

seq1  GTAAATAAAAGGCCTCAGCTCATTAATATGCTCAACTAAGACCTGAAACA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATAAAAGGCCTCAGCTCATTAATATGCTCAACTAAGACCTGAAACA  549

seq1  AACAATGTAAGGTGTGTAAGTGCAGAAAGTGAACTGTACATTTCTCTGAC  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGTAAGGTGTGTAAGTGCAGAAAGTGAACTGTACATTTCTCTGAC  599

seq1  TGCCACACGACTTCAGCAAACAGTGAGCAATCTAGGGCCAGATCCCAACG  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACACGACTTCAGCAAACAGTGAGCAATCTAGGGCCAGATCCCAACG  649

seq1  GTGCAAGCTCTTGTCAATAATGTAAAACTACCACTGGGGTTAGTCAAGAC  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAAGCTCTTGTCAATAATGTAAAACTACCACTGGGGTTAGTCAAGAC  699

seq1  TCTAAAATGAATTCTGCAAGCCAGAAAAATACAGTAAGTAACAAATATAT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAATGAATTCTGCAAGCCAGAAAAATACAGTAAGTAACAAATATAT  749

seq1  GCATATAGATAGATAGATAAACACAGAGATAGATTTCCTTTTATTTATGT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATAGATAGATAGATAAACACAGAGATAGATTTCCTTTTATTTATGT  799

seq1  CTGTGTGGCACACACACACACACACACACTCCATAGCATCATCTGGAGGT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGGCACACACACACACACACACACTCCATAGCATCATCTGGAGGT  849

seq1  CAGAAGACACTTTGTGGGGAGTCTGTGCTCTCCTTCTACTATGAGAGCTA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGACACTTTGTGGGGAGTCTGTGCTCTCCTTCTACTATGAGAGCTA  899

seq1  TAGACTGAACTCAGGCTGTGAAGATTCACAGCAAGCACCTTTATCTGCTG  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTGAACTCAGGCTGTGAAGATTCACAGCAAGCACCTTTATCTGCTG  949

seq1  AGCCATCTTACCAGCCCACACATGCATTTTTAAGGTTGAAGGAAGGGGAA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATCTTACCAGCCCACACATGCATTTTTAAGGTTGAAGGAAGGGGAA  999

seq1  CAGAGCAGATGAGGCAACTGGTTTTACCTGAAATGAATTC  1029
      ||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCAGATGAGGCAACTGGTTTTACCTGAAATGAATTC  1039