BAC Information

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BAC

Clone NameB6Ng01-305G13
Chromosome3 (Build37)
Map Location 45,000,289 - 45,129,450
singlet/doubletdoublet
Overlap geneLOC100039296
Upstream geneLOC676484
Downstream genePcdh10, LOC100039282, LOC433580, LOC671801
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-305G13.bB6Ng01-305G13.g
ACCGA098707GA098708
length1,063274
definitionB6Ng01-305G13.b B6Ng01-305G13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,128,392 - 45,129,450)(45,000,289 - 45,000,562)
sequence
gaattctgtctttgttttgccatgcttgattcattgtttttggtataaat
atacattcacatatatttctaactttcagagcaaaaacaaagcatagaca
atgtcaaaaattctgttaaccagggtatttacaatattacatttccaatg
ctatcccagaagtctcccataccctccccccaccacgcccctacccaccc
actcccactttttggccctggcattctgtactggggcatataaagtttgc
aagtccaatgggcctctctttccagtgatggctgactaggccatcttttg
atacatatgcagctagagtcaagagctccggggtactggttagtttataa
tgttgttccacctatagggttgaagatccctttagctccttgggtagttt
ctctagctcctctattggggcccctgtgatccatctctttaaagttactg
cacaaaaaccttcatcctgtatgatgtccatcacgatttacaagggaaaa
taacttcttaattgctttttattttgcctgtgtcaaactttcttccaact
gaccaccaaatatattttgtgctccttcaaggatgtctctgaacacattc
caatttttgtatcatcaatgccaacatacataacttatcttgaccattgc
agtaacttaataactaggcatctcaaatccatacataatttccaaacaat
ttatggggtccaactcaagtgatctttgagaagtgcaaactgatcttttc
attcctcttgaatcaaaatgattcaaagactttgcatcataaaactccag
atcattaagatggcctaaggagtcctaaatcatttggcctgagatcattg
tctcctttgttttcctctttaataattctaaactgtccctctaaattatc
cctgtagttcctagaacaagaaaactattgtcttcattacagatattctg
tctgttgctgccattttttctgcaccttaaatgataactcagtttccgaa
ttgtgtctccacatggcccctctctcagggtcttttccctggttttaatg
aattgagaacttc

ctgatatcaccaagacttttaatatgtaggggtattgtattttgtcaaat
tctttttcatcatctaatgagataatcttgtgatttttttttgtttgttt
gtttgttagtggattatgttgatgggttttcatatattgccatccctgca
agaatgagaatcataaaaccagatgcaatatttttttatttaaatatgaa
gacacactcaggatcttggtactaaactactaaacttccatgcagatagt
gtggagggttttttttgggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_45128392_45129450
seq2: B6Ng01-305G13.b_46_1108 (reverse)

seq1  GAAGTTCTCAAATCATTTAAAAC-TGGAAAAGACCCTGAGA-AGGGGCCA  48
      ||||||||||| ||||| ||| |  |||||||||||||||| ||||||||
seq2  GAAGTTCTCAATTCATTAAAACCAGGGAAAAGACCCTGAGAGAGGGGCCA  50

seq1  TGT-GAGACACAATCTGAAACCTGAG-TATCATTTAAGGTGCAGAAAAAA  96
      ||| ||||||||||  | || ||||| |||||||||||||||||||||||
seq2  TGTGGAGACACAATTCGGAAACTGAGTTATCATTTAAGGTGCAGAAAAAA  100

seq1  TGGCAGCAACAGACAGAATATCTGTAATGAAGACAATAGTTTTCTTGTTC  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGCAACAGACAGAATATCTGTAATGAAGACAATAGTTTTCTTGTTC  150

seq1  TAGGAACTACAGGGATAATTTAGAGGGACAGTTTAGAATTATTAAAGAGG  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAACTACAGGGATAATTTAGAGGGACAGTTTAGAATTATTAAAGAGG  200

seq1  AAAACAAAGGAGACAATGATCTCAGGCCAAATGATTTAGGACTCCTTAGG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAGGAGACAATGATCTCAGGCCAAATGATTTAGGACTCCTTAGG  250

seq1  CCATCTTAATGATCTGGAGTTTTATGATGCAAAGTCTTTGAATCATTTTG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTAATGATCTGGAGTTTTATGATGCAAAGTCTTTGAATCATTTTG  300

seq1  ATTCAAGAGGAATGAAAAGATCAGTTTGCACTTCTCAAAGATCACTTGAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAGAGGAATGAAAAGATCAGTTTGCACTTCTCAAAGATCACTTGAG  350

seq1  TTGGACCCCATAAATTGTTTGGAAATTATGTATGGATTTGAGATGCCTAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACCCCATAAATTGTTTGGAAATTATGTATGGATTTGAGATGCCTAG  400

seq1  TTATTAAGTTACTGCAATGGTCAAGATAAGTTATGTATGTTGGCATTGAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAAGTTACTGCAATGGTCAAGATAAGTTATGTATGTTGGCATTGAT  450

seq1  GATACAAAAATTGGAATGTGTTCAGAGACATCCTTGAAGGAGCACAAAAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAAAAATTGGAATGTGTTCAGAGACATCCTTGAAGGAGCACAAAAT  500

seq1  ATATTTGGTGGTCAGTTGGAAGAAAGTTTGACACAGGCAAAATAAAAAGC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGGTGGTCAGTTGGAAGAAAGTTTGACACAGGCAAAATAAAAAGC  550

seq1  AATTAAGAAGTTATTTTCCCTTGTAAATCGTGATGGACATCATACAGGAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGAAGTTATTTTCCCTTGTAAATCGTGATGGACATCATACAGGAT  600

seq1  GAAGGTTTTTGTGCAGTAACTTTAAAGAGATGGATCACAGGGGCCCCAAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTTTTTGTGCAGTAACTTTAAAGAGATGGATCACAGGGGCCCCAAT  650

seq1  AGAGGAGCTAGAGAAACTACCCAAGGAGCTAAAGGGATCTTCAACCCTAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGCTAGAGAAACTACCCAAGGAGCTAAAGGGATCTTCAACCCTAT  700

seq1  AGGTGGAACAACATTATAAACTAACCAGTACCCCGGAGCTCTTGACTCTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGAACAACATTATAAACTAACCAGTACCCCGGAGCTCTTGACTCTA  750

seq1  GCTGCATATGTATCAAAAGATGGCCTAGTCAGCCATCACTGGAAAGAGAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCATATGTATCAAAAGATGGCCTAGTCAGCCATCACTGGAAAGAGAG  800

seq1  GCCCATTGGACTTGCAAACTTTATATGCCCCAGTACAGAATGCCAGGGCC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATTGGACTTGCAAACTTTATATGCCCCAGTACAGAATGCCAGGGCC  850

seq1  AAAAAGTGGGAGTGGGTGGGTAGGGGCGTGGTGGGGGGAGGGTATGGGAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTGGGAGTGGGTGGGTAGGGGCGTGGTGGGGGGAGGGTATGGGAG  900

seq1  ACTTCTGGGATAGCATTGGAAATGTAATATTGTAAATACCCTGGTTAACA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGGGATAGCATTGGAAATGTAATATTGTAAATACCCTGGTTAACA  950

seq1  GAATTTTTGACATTGTCTATGCTTTGTTTTTGCTCTGAAAGTTAGAAATA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTTGACATTGTCTATGCTTTGTTTTTGCTCTGAAAGTTAGAAATA  1000

seq1  TATGTGAATGTATATTTATACCAAAAACAATGAATCAAGCATGGCAAAAC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGAATGTATATTTATACCAAAAACAATGAATCAAGCATGGCAAAAC  1050

seq1  AAAGACAGAATTC  1059
      |||||||||||||
seq2  AAAGACAGAATTC  1063


seq1: chr3_45000289_45000562
seq2: B6Ng01-305G13.g_74_347

seq1  CTGATATCACCAAGACTTTTAATATGTAGGGGTATTGTATTTTGTCAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATATCACCAAGACTTTTAATATGTAGGGGTATTGTATTTTGTCAAAT  50

seq1  TCTTTTTCATCATCTAATGAGATAATCTTGTGATTTTTTTTTGTTTGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTCATCATCTAATGAGATAATCTTGTGATTTTTTTTTGTTTGTTT  100

seq1  GTTTGTTAGTGGATTATGTTGATGGGTTTTCATATATTGCCATCCCTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTAGTGGATTATGTTGATGGGTTTTCATATATTGCCATCCCTGCA  150

seq1  AGAATGAGAATCATAAAACCAGATGCAATATTTTTTTATTTAAATATGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGAGAATCATAAAACCAGATGCAATATTTTTTTATTTAAATATGAA  200

seq1  GACACACTCAGGATCTTGGTACTAAACTACTAAACTTCCATGCAGATAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACACTCAGGATCTTGGTACTAAACTACTAAACTTCCATGCAGATAGT  250

seq1  GTGGAGGGTTTTTTTTGGGGGGGG  274
      ||||||||||||||||||||||||
seq2  GTGGAGGGTTTTTTTTGGGGGGGG  274


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