BAC Information

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BAC

Clone NameB6Ng01-306C11
Chromosome4 (Build37)3 (Build37)
Map Location 55,678,776 - 55,679,72536,818,547 - 36,819,535
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC384018, EG666920, Zfp462, LOC670211, Rad23b, LOC666953, LOC100041348, Klf4
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-306C11.bB6Ng01-306C11.g
ACCGA099264GA099265
length9471,148
definitionB6Ng01-306C11.b B6Ng01-306C11.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(55,678,776 - 55,679,725)(36,818,547 - 36,819,535)
sequence
gaattccaggacagccagggctatacagagaaaccctgtcttgaaaaaaa
aaaaacaaaaacaaaaacaaaaaaacaaacaagcaaacaaaaaaccctga
ggccatagtaatccttttccatgaaacagccaataaaatcagctaaaagc
acttgctgttcctgcaaagaacccaggttcactccccataggagtaagtt
tccttccctatggagatcaagaggccatcctagagatagacacaaaatct
gccaggatcttgctcatagacttcccagatacacaatatcatccaatgct
ataagtgaacagaactataggaatctcttgttagaagcgtctacctccac
acaggtctcactgacacacacacacacacacacattgctacacacactta
tgtaccatcaatatcatcccatccacaggggcacataacatatgcataca
ccacaaacacatatttataccatacttttggtgtgtgcacatttacagca
cgttatctacaaggggaatcatacaaacagtttggtattccatgtggata
attcaggatgatttgtctatatctctttggctttttgtctatattcacct
tctttgtgttgaatacctgtaattttgtaatttaaaagataatagagatg
agtttactaggaaacacaaacacagggaaacacatttagtattcccttcc
tgagttatctcttttctttctaggggttgttggtgatggcgatgagcacg
caggtaaacgtttttgttgtttcatgtctagcctggggctctaaatagga
catatgatgggcataattaacatgcatgcattttttctctgaactatata
tctcagctgtctatagtgcgtaatggatcataggagatgtatctgttggt
agagcgtctacgtccacacaggtctcactgacacacacacacacaca
gaattcagtgttcacatgtttcattcaacaagctcaagacaaaacagcat
ctttggtttttccaagcgcagattatcattatcggagttcgattctttga
gccgttttgctgtatctcatttaaggaggtggggggtagaggggtcatct
ttgctacttttgctttgaaaaatatatctctgtaactctaaaagtacata
attaaggataattattatattatccatgtcacagagagctaataaggatc
aaatggcataatatcagtaagaaaactgcttgattcagctttgatacaga
gtaaatgcccaattaaaattacctataattactccaaaatacttaaagga
tacaaatttgtaggtatttgagaatacacatatgttaattaattttatct
tttgtatctccaataaagaatcattaaaatagcagttatttgaaaacaca
aatgatattcaaaacacttacatgactgttttagctgttcatctgctttt
tgtggataaattggatgccaggtataatcaatggtgagcatgacacttgg
gacagtccagcattcaacccaaccagcccttcaaaataaaaacgacaata
agatctgttcagacacttaatctttacttctataggaaactagttacaga
taaagcttatttgtttgaaaggaatttctctacctatgagcacaaaatcc
tcagaccactatgctatgcccttacttttcctgagtaacgttgcgccact
tttgggtttaactgttttctggccactctgacactcggcagggaatacca
gtttcaggaaccatcttatttggggtgacaattctttaccagcataaata
atgaatatttactagggtggcaatctggtagaaataaatgaagatcacat
cctcctcccctaaaaaaataattttataagaataatcaatacataaatgt
ggtagcatacttatatacacttaaatcaacctataataatcttggaaaag
ggacttgaaaatcagccaataatttttaaattacaattattttacactgg
aaaggtcagataaattaccaggaataggattaaccatgacttgaatttaa
atttattctagaaaaatatgaacgattttataggaagcaatgcgaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_55678776_55679725
seq2: B6Ng01-306C11.b_46_992 (reverse)

seq1  TGTGTGTGTGTGTGTGTCAGTGAGACCTGTGTGGAGGTAGACGCTTCTAA  50
      ||||||||||||||||||||||||||||||||||| |||||||| |||| 
seq2  TGTGTGTGTGTGTGTGTCAGTGAGACCTGTGTGGACGTAGACGC-TCTAC  49

seq1  CAAGAGATTCCTATAGTTCTGTTCACTTATAGCATTGGAAACA-CTGAGA  99
      ||| |||| | | |   | || ||  |||  ||| |  | ||| ||||||
seq2  CAACAGATACATCT-CCTATGATCCATTA-CGCACTATAGACAGCTGAGA  97

seq1  TTTAGCTTAGGGAAAAAAAATCCAGGCATGGTAAAATATGCCCATCATCT  149
      | ||   |   || ||||||| || |||| || || |||||||||||| |
seq2  TATATAGTTCAGAGAAAAAATGCATGCAT-GTTAATTATGCCCATCATAT  146

seq1  -CAGTATTTGAGAGCTCCAGGCTAGCCTGG--GCTACATAGTGAAGTCTT  196
          ||||| ||||| ||||||||| |  |   | ||| |   | || | 
seq2  GTCCTATTT-AGAGCCCCAGGCTAGACATGAAACAACAAA--AACGTTTA  193

seq1  GCTCCATGCTCATCACCATCACCAACAACCCCAAGAAAGAAAAGAGAAAA  246
       || | |||||||| ||||||||||||||||| |||||||||||||| ||
seq2  CCTGCGTGCTCATCGCCATCACCAACAACCCCTAGAAAGAAAAGAGATAA  243

seq1  CTCAGGAAGGGAATACTAAATGTGTTTCCCTGTGTTTGTGTTTCCTAGTA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGAAGGGAATACTAAATGTGTTTCCCTGTGTTTGTGTTTCCTAGTA  293

seq1  AATTCATCTCTATTATCTTTTAAATTACAAAATTACAGGTATTCAACACA  346
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCATCTCTATTATCTTTTAAATTACAAAATTACAGGTATTCAACACA  343

seq1  AAGAAGGTGAATATAGACAAAAAGCCAAAGAGATATAGAAAAATCATCCT  396
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAGAAGGTGAATATAGACAAAAAGCCAAAGAGATATAGACAAATCATCCT  393

seq1  GAATTATCCAAATGGAATACCAAACTGTTTCTATGATTCCCCTTGTAGAT  446
      |||||||||| ||||||||||||||||||| |||||||||||||||||||
seq2  GAATTATCCACATGGAATACCAAACTGTTTGTATGATTCCCCTTGTAGAT  443

seq1  AACGTGCTGTAAATGTGCACACACCAAAAGTATGGTATAAATATGTGTTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTGCTGTAAATGTGCACACACCAAAAGTATGGTATAAATATGTGTTT  493

seq1  GTGGTGTATGCATATGTTATGTGCCCCTGTGGATGGGATGATATTGATGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGTATGCATATGTTATGTGCCCCTGTGGATGGGATGATATTGATGG  543

seq1  TACATAAGTGTGTGTAGCAATGTGTGTGTGTGTGTGTGTGTCAGTGAGAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAAGTGTGTGTAGCAATGTGTGTGTGTGTGTGTGTGTCAGTGAGAC  593

seq1  CTGTGTGGAGGTAGACGCTTCTAACAAGAGATTCCTATAGTTCTGTTCAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGGAGGTAGACGCTTCTAACAAGAGATTCCTATAGTTCTGTTCAC  643

seq1  TTATAGCATTGGATGATATTGTGTATCTGGGAAGTCTATGAGCAAGATCC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGCATTGGATGATATTGTGTATCTGGGAAGTCTATGAGCAAGATCC  693

seq1  TGGCAGATTTTGTGTCTATCTCTAGGATGGCCTCTTGATCTCCATAGGGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGATTTTGTGTCTATCTCTAGGATGGCCTCTTGATCTCCATAGGGA  743

seq1  AGGAAACTTACTCCTATGGGGAGTGAACCTGGGTTCTCTGCAGGAACAGC  796
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGGAAACTTACTCCTATGGGGAGTGAACCTGGGTTCTTTGCAGGAACAGC  793

seq1  AAGTGCTTTTAGCTGATTTTATTGGCTGTTTCATGGAAAAGGATTACTAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTTTTAGCTGATTTTATTGGCTGTTTCATGGAAAAGGATTACTAT  843

seq1  GGCCTCAGGGTTTTTTGTTTGCTTGTTTGTTTTTTTGTTTTTGTTTTTGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCAGGGTTTTTTGTTTGCTTGTTTGTTTTTTTGTTTTTGTTTTTGT  893

seq1  TTTTTTTTTTTCAAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTCAAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGA  943

seq1  ATTC  950
      ||||
seq2  ATTC  947

seq1: chr3_36818547_36819535
seq2: B6Ng01-306C11.g_209_1212 (reverse)

seq1  AATTCTGCATTGCTTTCTATAATATCTGGTCTATATTTTTCTAGAATAA-  49
      ||||| ||||||||| |||||| |||  ||  ||||||||||||||||| 
seq2  AATTC-GCATTGCTTCCTATAAAATC--GTTCATATTTTTCTAGAATAAA  47

seq1  -TTTAATTTTAGTCATTGTTAAATCTTATTCCTGGT-ATTTATCTG-GCT  96
       || ||||  |||||| ||| |||| |||||||||| |||||||||  ||
seq2  TTTAAATTCAAGTCATGGTT-AATCCTATTCCTGGTAATTTATCTGACCT  96

seq1  TTTCAGTGT-AAATA--TGGTATTTAAAATTTATTGCTTGATTTTC-AGT  142
      || |||||| |||||  ||  |||||||| ||||||  |||||||| |||
seq2  TTCCAGTGTAAAATAATTGTAATTTAAAAATTATTGGCTGATTTTCAAGT  146

seq1  TCCTTTT-CAAGATTA-TATAGGTTGATTTAAGTGTATAT-AGTATGCTA  189
       |||||| |||||||| ||||||||||||||||||||||| |||||||||
seq2  CCCTTTTCCAAGATTATTATAGGTTGATTTAAGTGTATATAAGTATGCTA  196

seq1  ACACATTTATGTATTGATTATTCTTAT-AAATTA-TTTTTTAGGG--AGA  235
       |||||||||||||||||||||||||| |||||| ||||||||||   ||
seq2  CCACATTTATGTATTGATTATTCTTATAAAATTATTTTTTTAGGGGAGGA  246

seq1  AGATGTTGATCTTCATTTATTTCTACCAGATTGCCACCCTAGTAAATATT  285
       |||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATG-TGATCTTCATTTATTTCTACCAGATTGCCACCCTAGTAAATATT  295

seq1  CATTATTTATGCTGGTAAAGAATTGTCA-CCCAAATAAGATGGTTCCTGA  334
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CATTATTTATGCTGGTAAAGAATTGTCACCCCAAATAAGATGGTTCCTGA  345

seq1  AACTGGTATT-CCTGCCGAGTGTCAGAGTGGCCAGAAAACAGTTAAACC-  382
      |||||||||| |||||||||||||||||||||||||||||||||||||| 
seq2  AACTGGTATTCCCTGCCGAGTGTCAGAGTGGCCAGAAAACAGTTAAACCC  395

seq1  -AAAGTGGCGCAACGTTACTCAGGAAAAGTAAGGGCATAGCATAGTGGTC  431
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGGCGCAACGTTACTCAGGAAAAGTAAGGGCATAGCATAGTGGTC  445

seq1  TGAGGATTTTGTGCTCATAGGTAGAGAAATTCCTTTC-AACAAATAAGCT  480
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGAGGATTTTGTGCTCATAGGTAGAGAAATTCCTTTCAAACAAATAAGCT  495

seq1  TTATCTGTAACTAGTTTCCTATAGAAGTAAAGATTAAGTGTCTGAACAGA  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTGTAACTAGTTTCCTATAGAAGTAAAGATTAAGTGTCTGAACAGA  545

seq1  TCTTATTGTCGTTTTTATTTTGAAGGGCTGGTTGGGTTGAATGCTGGACT  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTGTCGTTTTTATTTTGAAGGGCTGGTTGGGTTGAATGCTGGACT  595

seq1  GTCCCAAGTGTCATGCTCACCATTGATTATACCTGGCATCCAATTTATCC  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAAGTGTCATGCTCACCATTGATTATACCTGGCATCCAATTTATCC  645

seq1  ACAAAAAGCAGATGAACAGCTAAAACAGTCATGTAAGTGTTTTGAATATC  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAGCAGATGAACAGCTAAAACAGTCATGTAAGTGTTTTGAATATC  695

seq1  ATTTGTGTTTTCAAATAACTGCTATTTTAATGATTCTTTATTGGAGATAC  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGTTTTCAAATAACTGCTATTTTAATGATTCTTTATTGGAGATAC  745

seq1  AAAAGATAAAATTAATTAACATATGTGTATTCTCAAATACCTACAAATTT  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATAAAATTAATTAACATATGTGTATTCTCAAATACCTACAAATTT  795

seq1  GTATCCTTTAAGTATTTTGGAGTAATTATAGGTAATTTTAATTGGGCATT  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCTTTAAGTATTTTGGAGTAATTATAGGTAATTTTAATTGGGCATT  845

seq1  TACTCTGTATCAAAGCTGAATCAAGCAGTTTTCTTACTGATATTATGCCA  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTGTATCAAAGCTGAATCAAGCAGTTTTCTTACTGATATTATGCCA  895

seq1  TTTGATCCTTATTAGCTCTCTGTGACATGGATAATATAATAATTATCCTT  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATCCTTATTAGCTCTCTGTGACATGGATAATATAATAATTATCCTT  945

seq1  AATTATGTACTTTTAGAGTTACAGAGATATATTTTTCAAAGCAAAAGTAG  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGTACTTTTAGAGTTACAGAGATATATTTTTCAAAGCAAAAGTAG  995

seq1  CAAAGATGA  989
      |||||||||
seq2  CAAAGATGA  1004