BAC Information

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BAC

Clone NameB6Ng01-306J08
Chromosome3 (Build37)
Map Location 106,094,656 - 106,221,156
singlet/doubletdoublet
Overlap geneEG624696, BC051070
Upstream gene1700095B22Rik, Kcnd3, Ddx20, 6530418L21Rik, Rap1a, EG433637, Adora3, I830077J02Rik, Atp5f1, Wdr77, Ovgp1, 1700027A23Rik, LOC100043591, Bclp2, LOC100043594, LOC670819, LOC100043129, Chia, Chi3l3, Chi3l4
Downstream gene2010016I18Rik, Dennd2d, Cept1, Tmem77, LOC100043608, 4933421E11Rik, Cd53, Olfr266, Kcna3, AI504432, Kcna2, Kcna10, Gm131, A630076J17Rik, Prok1, Hbxip, Slc16a4, Rbm15, LOC383901
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-306J08.bB6Ng01-306J08.g
ACCGA099575GA099576
length1,111615
definitionB6Ng01-306J08.b B6Ng01-306J08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,094,656 - 106,095,765)(106,220,593 - 106,221,156)
sequence
gaattccaaaaaaaaaatttctatacatattaggtagacataaattaata
taatcaattttaatgatttattgaggtatttacacaataaagtaaaaatg
taaatgtccattgaattaattttataggactcataattatcataaaaata
tctgaaataacatgtaagtacattgtactttttgtaggaaatgcgtaaag
cttttgaggaagaatccactgtgaaacacattccaaggctgctactcact
tccacaggagcaggaatcattgatgtaatcaagtctgggtacaagatccc
tgaactgtctcagtaagtgaggatccatcttcaggactcccgtgtgggtt
taagcagaggtcacttatttgttggttgcttcaaggcactgtgatgggta
tgcttcatagcatgtatgactacatagaaacgaaaatggtcctaagaaag
aattctaactttatgcttattgatcttataaatactgtgtttatgtataa
aaatatttcatatattaatgtagtgctttcgatcacatacattcactaac
aacttcctctctaaatcattctaatagctgtaattatatccctctgaatt
ataggtttttctgctttcagggtttttttttctatttatttttcattaga
tattttttatttacatttcaaaggttatcccctttcttggttttccctcc
aaaaattccctatccctcccccctgctccccaatgcacccactcctgctt
cctggccctagcattcccctacactgaggcatagagccttcataggacca
agggcctctcttcccattgatgacagattaggtcatcctctgctacatat
gcagttagaaccttgagtaccaccatgtgttttctttaattggtggttta
gtccccaggagctctggggttactgcttttcagtttttaactgatgttaa
tatcgatttacaccaatttctaaagcccatattatgcatggcctcttggt
catccatgagaaatagagtcacctaccaatggcccacattcctaagagaa
ggttgaatttatcatttttgcagccatttagttatactccttatagtatg
ttggctgggac
gaattcctgatctttccagaacttttatcatgaatgggtgatggatcttg
tcaaatgctttttctgcatccaacgagatgatcatgtggtttttgtcttt
gagtttgtttatatagtggattacattgatggattttcgtatattaaacc
atccctgcattcctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgatggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtactttctacttctatcttgtgaaaaagtttgtgcagaactgg
aattagatctctttgaaggtctgatagaactctgcactaaacccgtctgg
tcctgggctttttttggctgggagactattaataactgcttctatttctt
taggggatatgggactgtttagaaggtcaacttgatcctgattcaacttt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttgcc
agttttgttgagtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_106094656_106095765
seq2: B6Ng01-306J08.b_48_1158

seq1  GAATTCCAAAAAAAAAAATTTCTATACATATTAGGTAGACATAAATTAAT  50
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCC-AAAAAAAAAATTTCTATACATATTAGGTAGACATAAATTAAT  49

seq1  ATAATCAATTTTAATGATTTATTGAGGTATTTACACAATAAAGTAAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCAATTTTAATGATTTATTGAGGTATTTACACAATAAAGTAAAAAT  99

seq1  GTAAATGTCCATTGAATTAATTTTATAGGACTCATAATTATCATAAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATGTCCATTGAATTAATTTTATAGGACTCATAATTATCATAAAAAT  149

seq1  ATCTGAAATAACATGTAAGTACATTGTACTTTTTGTAGGAAATGCGTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAAATAACATGTAAGTACATTGTACTTTTTGTAGGAAATGCGTAAA  199

seq1  GCTTTTGAGGAAGAATCCACTGTGAAACACATTCCAAGGCTGCTACTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTGAGGAAGAATCCACTGTGAAACACATTCCAAGGCTGCTACTCAC  249

seq1  TTCCACAGGAGCAGGAATCATTGATGTAATCAAGTCTGGGTACAAGATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACAGGAGCAGGAATCATTGATGTAATCAAGTCTGGGTACAAGATCC  299

seq1  CTGAACTGTCTCAGTAAGTGAGGATCCATCTTCAGGACTCCCGTGTGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACTGTCTCAGTAAGTGAGGATCCATCTTCAGGACTCCCGTGTGGGT  349

seq1  TTAAGCAGAGGTCACTTATTTGTTGGTTGCTTCAAGGCACTGTGATGGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCAGAGGTCACTTATTTGTTGGTTGCTTCAAGGCACTGTGATGGGT  399

seq1  ATGCTTCATAGCATGTATGACTACATAGAAACGAAAATGGTCCTAAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTCATAGCATGTATGACTACATAGAAACGAAAATGGTCCTAAGAAA  449

seq1  GAATTCTAACTTTATGCTTATTGATCTTATAAATACTGTGTTTATGTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAACTTTATGCTTATTGATCTTATAAATACTGTGTTTATGTATA  499

seq1  AAAATATTTCATATATTAATGTAGTGCTTTCGATCACATACATTCACTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTTCATATATTAATGTAGTGCTTTCGATCACATACATTCACTAA  549

seq1  CAACTTCCTCTCTAAATCATTCTAATAGCTGTAATTATATCCCTCTGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTCCTCTCTAAATCATTCTAATAGCTGTAATTATATCCCTCTGAAT  599

seq1  TATAGGTTTTTCTGCTTTCAGGGTTTTTTTTTCTATTTATTTTTCATTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGTTTTTCTGCTTTCAGGGTTTTTTTTTCTATTTATTTTTCATTAG  649

seq1  ATATTTTTTATTTACATTTCAAAGGTTATCCCCTTTCTTGGTTTTCCCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTTTATTTACATTTCAAAGGTTATCCCCTTTCTTGGTTTTCCCTC  699

seq1  CAAAAATTCCCTATCCCTCCCCCCTGCTCCCCAATGCACCCACTCCTGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATTCCCTATCCCTCCCCCCTGCTCCCCAATGCACCCACTCCTGCT  749

seq1  TCCTGGCCCTAGCATTCCCCTACACTGAGGCATAGAGCCTTCATAGGACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGCCCTAGCATTCCCCTACACTGAGGCATAGAGCCTTCATAGGACC  799

seq1  AAGGGCCTCTCTTCCCATTGATGACAGATTAGGTCATCCTCTGCTACATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCCTCTCTTCCCATTGATGACAGATTAGGTCATCCTCTGCTACATA  849

seq1  TGCAGTTAGAACCTTGAGTACCACCATGTGTTTTCTTTAATTGGTGGTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTTAGAACCTTGAGTACCACCATGTGTTTTCTTTAATTGGTGGTTT  899

seq1  AGTCCCCAGGAGCTCTGGGGTTACTGC-TTTCAGTTTTTAA-TGATGTTA  948
      ||||||||||||||||||||||||||| ||||||||||||| ||||||||
seq2  AGTCCCCAGGAGCTCTGGGGTTACTGCTTTTCAGTTTTTAACTGATGTTA  949

seq1  ATATCGATTTACA-CAAATTCTAAAGCCAATA-TATGCATGG-CTCTTGG  995
      ||||||||||||| ||| |||||||||| ||| ||||||||| ||||| |
seq2  ATATCGATTTACACCAATTTCTAAAGCCCATATTATGCATGGCCTCTT-G  998

seq1  GTCATCCATGAG-AATAGAGTCACCTACCAATGG-CCACATTCCTAAGAG  1043
      |||||||||||| ||||||||||||||||||||| |||||||||||||||
seq2  GTCATCCATGAGAAATAGAGTCACCTACCAATGGCCCACATTCCTAAGAG  1048

seq1  -AGGTTGAAATTTAATCA-TTTTGCAGCCATTAAGTAATAACTTCTTTAT  1091
       ||||||||  || |||| ||||||||||||| ||| |||   || ||||
seq2  AAGGTTGAA--TTTATCATTTTTGCAGCCATTTAGTTATA--CTCCTTAT  1094

seq1  AGTATGTTGGGCTTGGGAC  1110
      ||||||||||   ||||||
seq2  AGTATGTTGG--CTGGGAC  1111

seq1: chr3_106220593_106221156
seq2: B6Ng01-306J08.g_118_682 (reverse)

seq1  ATACTCAACAAAACTGG-AAAACCTGGACGAAATGGACAAATTTCTGGAC  49
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATACTCAACAAAACTGGCAAAACCTGGACGAAATGGACAAATTTCTGGAC  50

seq1  AGATACCAGGTACC-AAAGTTGAATCAGGATCAAGTTGACCTTCTAAACA  98
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AGATACCAGGTACCAAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACA  100

seq1  GTCCCATATCCCCTAAAGAAATAGAAGCAGTTATAAATAGTCTCCCAGCC  148
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCC  150

seq1  AAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTT  200

seq1  CAAAGAAGATCTAATTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAG  248
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAG-AGATCTAATTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAG  249

seq1  TAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATA  298
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATA  299

seq1  CCTAAACCACAGAAAGATCCAACAAAGATAGGGAACTTCAGACCAATTTC  348
      ||||||||||||||||||||| ||||||||| ||||||||||||||||||
seq2  CCTAAACCACAGAAAGATCCATCAAAGATAGAGAACTTCAGACCAATTTC  349

seq1  TCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAA  399

seq1  TCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATT  449

seq1  CCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCAA  498
      ||||| |||||||||||||||||||||||||||||||||||||||||| |
seq2  CCAGGAATGCAGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCA  499

seq1  CTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATG  548
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTGGATG  549

seq1  CAGAAAAAGCATTTGA  564
      ||||||||||||||||
seq2  CAGAAAAAGCATTTGA  565