BAC Information

Click to search

BAC

Clone NameB6Ng01-306L03
Chromosome3 (Build37)
Map Location 109,098,405 - 109,099,361
singlet/doubletsinglet
Overlap genenone
Upstream geneSort1, Mybphl, Psrc1, Celsr2, Sars, 5330417C22Rik, 1700013F07Rik, 2010200O16Rik, Taf13, Wdr47, LOC100043166, Clcc1, Gpsm2, 4921525H12Rik, Stxbp3a, Fndc7, Prpf38b, 4921515J06Rik, B430201A12Rik, 4930443G12Rik, Slc25a24
Downstream geneVav3, Ntng1, LOC100043181, LOC100043183, Prmt6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-306L03.bB6Ng01-306L03.g
ACCGA099658GA099659
length1,129968
definitionB6Ng01-306L03.b B6Ng01-306L03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctttgtgaatgtgttacctcactcaggatgatgccctccaggtc
tatccatttggctaggaatttcataaattcattctttttaatagctgagt
agtactccattgtgtaaatgtaccacattttctgtatccattcctctgtt
gaggggcatctgggttctttccagcttctggctattataaataaggctgc
tatgaacatagtggagcatgtgtccttcttaccggttgggacaacttctg
gatatatgcccaggagaggtattgtgggatcctctggtagtactatgtcc
aattttctgaggaaccgccagactgatttccagagtggttgtacaagcct
gcaatcccaccaacaatggaggagtgttactctttctccacatcctcccc
agaatctgctgtcacctgaatatttgatcttagccattctgactggtgtg
aggtggaatctcagggttgtttggatttgcatttccctgatgattaggga
cgttgaacattttttcaggtgcttctctgccattcggtattcctcaggtg
agatttctttgttcagttctgagccccattttttaatggggttatttgat
tttctgaagtccaccttcttgagttctttatatatgttggatattagtcc
cctatctgatttaggataggtaaagatcctttcccaatctgttggtggtc
tttttgtcttattgacggtgtcttttgccttgcagaagctttggagtttc
atgaggtcccatttgtcaattctcaatcatacagcacaagccattgctgt
tctattcaggaattattcccctgtgcccatatcttcaaggcttttctcca
ctttctcctctataagttttcagtgtctctggttttatgtgaagttcctt
gatccacttagatttgaccttagtaccaaggagatagggtattgggatcg
atttcgcattccttctacatgataaccaaccagttgtgccaagcaccaat
tgttgaaattgctgtctttcttcactggaatggtttaagctcccttgtcc
aaagatcaagtgaccaataggatgtgtgtgggttacatattcgggttcat
tcaattcattatcacatgtgggcctacat
gaattctatacatcaggagttacatgcagcactgctttgaaaacacacta
gtgtcttttgttattattattattattattattattattttactttactt
tttggttcagtttaatgtgcaggggaaacgtggcatccctgttgttgaac
agttcctccctccctccctaccctattcagtctgaagctcacatcctcac
actccccattttgcttaccaaactctgccctgatggcaaagctttagtcg
tccagacccgagtataattaggaggtctgtgaagcatcagggtcagcagt
gatagtaaaacctcccttccctgcttggatggcacaaagctctgcagtgg
gctttatatgctagctcttctaaatttatttctagctacctgccttttga
gaaaagaaagcaaggaatagcaggaggggatggctccataggagtgagga
tgaagaacagttaggaaatgggaggaaatgttggaaattcaggaaccaaa
aacatcttactgctacttgcgactcaaatgttgaggccatttctggaaga
gaggagaaatgcattggtttaattagctaacaatgtttttttgtttagtt
tttgtttttgttttgttttgtttttgtttttttgtaaagacatgatctcc
ttatgtagttcaagttgtcctggaacttgagatccttcttcctctgcctc
ttgagttttcaaattacagaaatcagccaccacacttggcatttggctaa
aatgccacttaaaaaaaatttttttttagatattttcttcatttatattt
cagatgttatcccctttcctaatttccccatcaaaaatccacctctatcc
tccccctccccctgcttcccaacccacccacttctcaattcctgatcctg
gcattctcctatagagagtctttcacagggaccaaggggtcttcttcctt
cccattgacgaactcacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_109098405_109099361
seq2: B6Ng01-306L03.g_67_1033

seq1  GAATTCTATACATCAGGAGTTACATGCAGCACTGCTTTGAAAACACACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATACATCAGGAGTTACATGCAGCACTGCTTTGAAAACACACTA  50

seq1  GTGTCTTTTGTTATTATTATTATTATTATTATTATTATTTTACTTTACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTTTTGTTATTATTATTATTATTATTATTATTATTTTACTTTACTT  100

seq1  TTTGGTTCAGTTTAATGTGCAGGGGAAACGTGGCATCCCTGTTGTTGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTCAGTTTAATGTGCAGGGGAAACGTGGCATCCCTGTTGTTGAAC  150

seq1  AGTTCCTCCCTCCCTCCCTACCCTATTCAGTCTGAAGCTCACATCCTCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCTCCCTCCCTCCCTACCCTATTCAGTCTGAAGCTCACATCCTCAC  200

seq1  ACTCCCCATTTTGCTTACCAAACTCTGCCCTGATGGCAAAGCTTTAGTCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCCATTTTGCTTACCAAACTCTGCCCTGATGGCAAAGCTTTAGTCG  250

seq1  TCCAGACCCGAGTATAATTAGGAGGTCTGTGAAGCATCAGGGTCAGCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGACCCGAGTATAATTAGGAGGTCTGTGAAGCATCAGGGTCAGCAGT  300

seq1  GATAGTAAAACCTCCCTTCCCTGCTTGGATGGCACAAAGCTCTGCAGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTAAAACCTCCCTTCCCTGCTTGGATGGCACAAAGCTCTGCAGTGG  350

seq1  GCTTTATATGCTAGCTCTTCTAAATTTATTTCTAGCTACCTGCCTTTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTATATGCTAGCTCTTCTAAATTTATTTCTAGCTACCTGCCTTTTGA  400

seq1  GAAAAGAAAGCAAGGAATAGCAGGAGGGGATGGCTCCATAGGAGTGAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAAAGCAAGGAATAGCAGGAGGGGATGGCTCCATAGGAGTGAGGA  450

seq1  TGAAGAACAGTTAGGAAATGGGAGGAAATGTTGGAAATTCAGGAACCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAACAGTTAGGAAATGGGAGGAAATGTTGGAAATTCAGGAACCAAA  500

seq1  AACATCTTACTGCTACTTGCGACTCAAATGTTGAGGCCATTTCTGGAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCTTACTGCTACTTGCGACTCAAATGTTGAGGCCATTTCTGGAAGA  550

seq1  GAGGAGAAATGCATTGGTTTAATTAGCTAACAATGTTTTTTTGTTTAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGAAATGCATTGGTTTAATTAGCTAACAATGTTTTTTTGTTTAGTT  600

seq1  TTTGTTTTTGTTTTGTTTTGTTTTTGTTTTTTTGTAAAGACATGATCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTGTTTTGTTTTGTTTTTGTTTTTTTGTAAAGACATGATCTCC  650

seq1  TTATGTAGTTCAAGTTGTCCTGGAACTTGAGATCCTTCTTCCTCTGCCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTAGTTCAAGTTGTCCTGGAACTTGAGATCCTTCTTCCTCTGCCTC  700

seq1  TTGAGTTTTCAAATTACAGAAATCAGCCACCACACTTGGCATTTGGCTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTTTTCAAATTACAGAAATCAGCCACCACACTTGGCATTTGGCTAA  750

seq1  AATGCCACTTAAAAAAAA-TTTTTTTTAGATATTTTCTTCATTTATATTT  799
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AATGCCACTTAAAAAAAATTTTTTTTTAGATATTTTCTTCATTTATATTT  800

seq1  CAGATGTTATCCCCTTTCCTAATTTCCCCATCAAAAATCCACCTCTATCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGTTATCCCCTTTCCTAATTTCCCCATCAAAAATCCACCTCTATCC  850

seq1  TCCCCCTCCCCCTGCTCCCCAACCCACCCACT--CCCATTCCTGATCCTG  897
      |||||||||||||||| |||||||||||||||   | |||||||||||||
seq2  TCCCCCTCCCCCTGCTTCCCAACCCACCCACTTCTCAATTCCTGATCCTG  900

seq1  GCATTCCCCTATAGAGAG-CCTTCACA-GGACCAAGGG--CCTCT--CCT  941
      |||||| ||||||||||| | |||||| ||||||||||  | |||  | |
seq2  GCATTCTCCTATAGAGAGTCTTTCACAGGGACCAAGGGGTCTTCTTCCTT  950

seq1  CCCATTGACG-ACTCAC  957
      |||||||||| ||||||
seq2  CCCATTGACGAACTCAC  967