BAC Information

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BAC

Clone NameB6Ng01-306L08
Chromosome3 (Build37)
Map Location 80,598,355 - 80,599,495
singlet/doubletsinglet
Overlap geneGria2
Upstream geneTmem144, 1110032E23Rik, EG626797
Downstream geneGlrb, EG626841, Pdgfc, LOC229443
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-306L08.bB6Ng01-306L08.g
ACCGA099668GA099669
length1,1771,143
definitionB6Ng01-306L08.b B6Ng01-306L08.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccttcattagggtgcgaaccaggtcatcaggctcctccctcagga
cctaattcctattcattatgctttctcctaagaccttctcatttcaaatt
aaatagagtttcaatataggtggttttgagaacataaacattctaaacag
cagagatatgcttctttatgagataaaattggcttggtaagtatcataga
agtcttaaaaagaacatataaaagataacattttcctttattttttccca
cagtaaacatcctaagagctaatgttgtgttttaaaagacactgagtatt
acattttatctaaatattttattctgcctcatttttcctgattgaactag
ttacattcatgtagtgaccaaatgtgtatcaggtagacacttgagggggg
aagggcttactttggcttacagtttcaggttccatcatagcagggaaggc
atctggacatgcagagtttgggctaaaatacattcttttgatataattta
tattggggttatggtctactgaatatcagcatgtagaaaaaatgcaagta
gatccatatttatcaccctgcacaaaactcaagtcccagtggatcaaaga
ttttgacacaaagcagatacactaaaattgatagaaaagaaagtgaagaa
tagtctcgaggcattggcacaggaaacaactatatgaacagaacaccaat
catacaggcactaatatcaacattatccaataggacctcatggaactgaa
aagcttctgtaaggcaaaggacatcatcaaaaggacaaaacagcagtctt
gagaatgggataagattttttttttttttaccagttccacatctggcaga
gaattgatatccaaatatataaagaactcaggaaactagacataacaaac
caaattaattcaattaaaaaacaggtatagatctaatacagagaattctc
aacagagaatctcaatggccaagaattcatttacaggaattgttcaacat
cttagccatcaggaaatacaaatcaaactactctgagacttccattgtat
acctgttgaattgctaaatccaaaaccacagtgaaagctctcaatttgtg
aagactatgggagccaggggaaacccctcccattgcatattaggactacc
taactttgttctacaataactcgtttg
gaattcagcactaaatagattttacaacactaaaatcttaatttctgaag
aagtctcaaaatattaaaattaataaaagcatgtatggcttttgacatag
aaatgatttttttaggcataagatacagataaatcaaagtagcataagaa
attctttatttaaaaatgtctttctgaaatcggcctggtatttcacaact
ctcctgattctattttgctgaagactgttcttaagtttatcatattaaat
cttacaactgtccctagctttaatccgtaagttagaagtaagcacttaga
ctgttgatcaaattaatatcctaatgtaaaaaatgatatataataagtta
atatacccaaaaagtatcaatatagtgaaaagacagagcaaaactactag
agactaacttaaagataaactatatgctcagaagaaaacgaaagttcatg
tatacaaagtaatcacaacacacacacacactcacacacatacacacaca
ctcacacacacacacgtatacaaatacacaatgcaatagatttcaaaatg
ttctctgaagaatacaaatttttaattctagacatttcagttaatttttt
cactaaaagaatgaacacaaaaattattctgtctgacgtcttagcagact
agtactggagagttactaagagtagaagaaaatgagcattttcttcaaaa
ttggtaactattgtttcaaaaaatatataaaattttaaatcatgttatat
atatatatatataattttaaatcatgattagttttgaaatatcaacgttg
agctcaaaagttcattttccagttccatgggaaggggcacattgtaacag
gtttgataattattaaacccacttgagataatctcagaaattttgactaa
aaattgccattaagagaggttttattctttcaataggatccataagaatc
tttcagtagaataacagtattttttttacaagggggagggagtggaatag
tacttcagaggctaataaagcccagtccatgtttggactctacgcaggat
gcagacgagaaaaaatatagtttccctcatttcacttagctggtaacctc
tgataaatggagctctgtagtaactatgttctgtgaacttttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_80598355_80599495
seq2: B6Ng01-306L08.g_67_1209

seq1  GAATTCAGCACTAAATAGATTTTACAACACTAAAATCTTAATTTCTGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCACTAAATAGATTTTACAACACTAAAATCTTAATTTCTGAAG  50

seq1  AAGTCTCAAAATATTAAAATTAATAAAAGCATGTATGGCTTTTGACATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTCAAAATATTAAAATTAATAAAAGCATGTATGGCTTTTGACATAG  100

seq1  AAATGATTTTTTTAGGCATAAGATACAGATAAATCAAAGTAGCATAAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATTTTTTTAGGCATAAGATACAGATAAATCAAAGTAGCATAAGAA  150

seq1  ATTCTTTATTTAAAAATGTCTTTCTGAAATCGGCCTGGTATTTCACAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTATTTAAAAATGTCTTTCTGAAATCGGCCTGGTATTTCACAACT  200

seq1  CTCCTGATTCTATTTTGCTGAAGACTGTTCTTAAGTTTATCATATTAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGATTCTATTTTGCTGAAGACTGTTCTTAAGTTTATCATATTAAAT  250

seq1  CTTACAACTGTCCCTAGCTTTAATCCGTAAGTTAGAAGTAAGCACTTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAACTGTCCCTAGCTTTAATCCGTAAGTTAGAAGTAAGCACTTAGA  300

seq1  CTGTTGATCAAATTAATATCCTAATGTAAAAAATGATATATAATAAGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGATCAAATTAATATCCTAATGTAAAAAATGATATATAATAAGTTA  350

seq1  ATATACCCAAAAAGTATCAATATAGTGAAAAGACAGAGCAAAACTACTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACCCAAAAAGTATCAATATAGTGAAAAGACAGAGCAAAACTACTAG  400

seq1  AGACTAACTTAAAGATAAACTATATGCTCAGAAGAAAACGAAAGTTCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAACTTAAAGATAAACTATATGCTCAGAAGAAAACGAAAGTTCATG  450

seq1  TATACAAAGTAATCACAACACACACACACACTCACACACATACACACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAAAGTAATCACAACACACACACACACTCACACACATACACACACA  500

seq1  CTCACACACACACACGTATACAAATACACAATGCAATAGATTTCAAAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACACACACACACGTATACAAATACACAATGCAATAGATTTCAAAATG  550

seq1  TTCTCTGAAGAATACAAATTTTTAATTCTAGACATTTCAGTTAATTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGAAGAATACAAATTTTTAATTCTAGACATTTCAGTTAATTTTTT  600

seq1  CACTAAAAGAATGAACACAAAAATTATTCTGTCTGACGTCTTAGCAGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAAAGAATGAACACAAAAATTATTCTGTCTGACGTCTTAGCAGACT  650

seq1  AGTACTGGAGAGTTACTAAGAGTAGAAGAAAATGAGCATTTTCTTCAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTGGAGAGTTACTAAGAGTAGAAGAAAATGAGCATTTTCTTCAAAA  700

seq1  TTGGTAACTATTGTTTCAAAAAATATATAAAATTTTAAATCATGTTATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAACTATTGTTTCAAAAAATATATAAAATTTTAAATCATGTTATAT  750

seq1  ATATATATATATAATTTTAAATCATGATTAGTTTTGAAATATCAACGTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATAATTTTAAATCATGATTAGTTTTGAAATATCAACGTTG  800

seq1  AGCTCAAAAGTTCATTTTCCAGTTCCAT-GGAAGGGGCACATTGTAACAG  849
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGCTCAAAAGTTCATTTTCCAGTTCCATGGGAAGGGGCACATTGTAACAG  850

seq1  GTTTGATAATTATTAAACCCACTTGAGATAATCTCAGAAATTTTGACTAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGATAATTATTAAACCCACTTGAGATAATCTCAGAAATTTTGACTAA  900

seq1  AAATTGCCATTAAGAGA-GTTTTATTCTTTCAATAGGATCCAT-AGAATC  947
      ||||||||||||||||| ||||||||||||||||||||||||| ||||||
seq2  AAATTGCCATTAAGAGAGGTTTTATTCTTTCAATAGGATCCATAAGAATC  950

seq1  -TTCAGTAGAAT-ACAGTA-TTTTTTTACAAAGGGGAGGGGAGTGGAATA  994
       ||||||||||| |||||| ||||||||||| ||||| ||||||||||||
seq2  TTTCAGTAGAATAACAGTATTTTTTTTACAAGGGGGA-GGGAGTGGAATA  999

seq1  GTAC-TCAGAGGCTAATAAAGCCCAGTCAATGTTT-GACTCTAACGCAAG  1042
      |||| ||||||||||||||||||||||| |||||| |||||| ||||| |
seq2  GTACTTCAGAGGCTAATAAAGCCCAGTCCATGTTTGGACTCT-ACGCAGG  1048

seq1  ATGAAAAGACGAGAAAAAAAATAATAGTTCCTCATTTCACTTTAGTTGTT  1092
      |||   ||||||||||||| ||| |  | ||||||||||| |||| || |
seq2  ATG--CAGACGAGAAAAAATATAGT-TTCCCTCATTTCAC-TTAGCTGGT  1094

seq1  AACCTCTGATAAAATGAGCTCTGTAGTTAACTATG-TCTGTTGACTTTTC  1141
      |||||||||||||  ||||||||||| |||||||| |||||  |||||||
seq2  AACCTCTGATAAATGGAGCTCTGTAG-TAACTATGTTCTGTGAACTTTTC  1143