BAC Information

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BAC

Clone NameB6Ng01-306O24
Chromosome3 (Build37)
Map Location 89,042,467 - 89,186,902
singlet/doubletdoublet
Overlap geneTrim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b
Upstream geneRhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2, Rxfp4, 2810403A07Rik, Rit1, Syt11, 5830417I10Rik, Msto1, Dap3, Ash1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1
Downstream geneLenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra, Atp8b2, LOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l, Rps27, Rab13, Jtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b, Gatad2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-306O24.bB6Ng01-306O24.g
ACCGA099842GA099843
length180220
definitionB6Ng01-306O24.b B6Ng01-306O24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,186,723 - 89,186,902)(89,042,467 - 89,042,685)
sequence
aaactcaggcctggctgactccagagcccagagctgttgcagtctctagt
agctctagactaacaaagtatcaggactgacctgcctgccgagcgagccg
ttgtagctgtgcttcccagccccgggttggtttttgtgttgtgttttctg
tttgggtttttgattggttggttagtttgt
agggtacattaggagagaaggaagcagtatgtgggtggccaggctgtgtg
ggagcacagggagaggaatagggaggggcccagcgggtggcagggccccc
aggacagggctgctgacttgcctggggtgctccggagcagagtccgcggt
ggccacagcctacaaagagagagggagaagcagcgctgagcgcggtagga
tggtgtgggtgtggcggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_89186723_89186902
seq2: B6Ng01-306O24.b_52_231 (reverse)

seq1  ACAAACTAACCAACCAATCAAAAACCCAAACAGAAAACACAACACAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACTAACCAACCAATCAAAAACCCAAACAGAAAACACAACACAAAAA  50

seq1  CCAACCCGGGGCTGGGAAGCACAGCTACAACGGCTCGCTCGGCAGGCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCCGGGGCTGGGAAGCACAGCTACAACGGCTCGCTCGGCAGGCAGG  100

seq1  TCAGTCCTGATACTTTGTTAGTCTAGAGCTACTAGAGACTGCAACAGCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCCTGATACTTTGTTAGTCTAGAGCTACTAGAGACTGCAACAGCTC  150

seq1  TGGGCTCTGGAGTCAGCCAGGCCTGAGTTT  180
      ||||||||||||||||||||||||||||||
seq2  TGGGCTCTGGAGTCAGCCAGGCCTGAGTTT  180

seq1: chr3_89042467_89042685
seq2: B6Ng01-306O24.g_69_287

seq1  AGGGTACATTAGGAGAGAAGGAAGCAGTATGTGGGTGGCCAGGCTGTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTACATTAGGAGAGAAGGAAGCAGTATGTGGGTGGCCAGGCTGTGTG  50

seq1  GGAGCACAGGGAGAGGAATAGGGAGGGGCCCAGCGGGTGGCAGGGCCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCACAGGGAGAGGAATAGGGAGGGGCCCAGCGGGTGGCAGGGCCCCC  100

seq1  AGGACAGGGCTGCTGACTTGCCTGGGGTGCTCCGGAGCAGAGTCCGCGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGGGCTGCTGACTTGCCTGGGGTGCTCCGGAGCAGAGTCCGCGGT  150

seq1  GGCCACAGCCTACAAAGAGAGAGGGAGAAGCAGCGCTGAGCGCGGTAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACAGCCTACAAAGAGAGAGGGAGAAGCAGCGCTGAGCGCGGTAGGA  200

seq1  TGGTGTGGGTGTGGCGGGG  219
      |||||||||||||||||||
seq2  TGGTGTGGGTGTGGCGGGG  219