BAC Information

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BAC

Clone NameB6Ng01-306P10
Chromosome3 (Build37)
Map Location 95,349,590 - 95,492,717
singlet/doubletdoublet
Overlap geneCtss, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4
Upstream geneSnx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, LOC100043312
Downstream geneEcm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1, Pafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip, Polr3gl, Ankrd34, 6330549D23Rik, Rbm8a, Pex11b, Itga10, Ankrd35
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-306P10.bB6Ng01-306P10.g
ACCGA099862GA099863
length1,064948
definitionB6Ng01-306P10.b B6Ng01-306P10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,349,590 - 95,350,630)(95,491,769 - 95,492,717)
sequence
gaattctctttgaaatacagtgaccctcttaatcttcccgtggggtttag
ggttgctgttgttagttacagagtctcgggctggtctcgaactcactacg
tagctggggaggttctgaagtcctgttcttcctgccttaccttccaaatg
ttgaattatagaggcttttgtcgccactccctacacagaaaatattttca
aacaagcacgtgccattcatgtttaaatacaggcttaaagaaaccttttc
agaccctaaacctcaatgcccagtgatatttccaggtgatctactagttc
attctcccacttaaaaggctcaataatgttatcccctttaccaccagatt
tcttattttctttttaaacaaattttgttaagtaacataagcaaaaaaaa
aaaagtcacacaagggctgacaagatggctcagtatgtaagggcccttgt
ggtcaagcttgacgacctgagtttaatcacctatcccagagagactacca
cgtctcataagtcatcctctgacctccacactcatgtgagtaaatgcaat
aaactcacactttaagtaattatcactggacaacaacctaccttaagcag
ttttgctttggtttatttctttcagcttctttttctgttatgatttgtag
gaggaaacactgttacatattcaacaaacatccacctgtaacttctgggt
ttgtttgtttcatcttttgcttttgagacacagtcacactatataactgt
aggtggcctggaatcactatgtagatcagactgaccttgaactctcagag
attcacctgcctctgccttcccagtgctgtctcttggggtgctgtctcac
agctgcagatgggcccaagggcttggcttataaacccaggccacctttgt
ccagcttggagtcagtgtttacaaacagtaaaacctcagaacaaaaagaa
tgaaaagaacaggttgggaacagaagggaacagagaaagggacaagaagg
gttcagaaggacaggggggccgggggacgtcaatagtcagttgaaaaagg
ggtgaagttagtgg
gaattcaccctgaagaccagtctagtatcgaacaacctatacgtttttgt
ttttcaaagaagttacgaggttggacaggcaaggcataggcaggccttta
atcccaacactgcagtaagcaatagcaggtggatctccatgagttgaagg
ctggcctggtctacacagttcaagccagacagggctaccgagaccctgcc
tcaaagacaaacaacaaaccaacaatccattaaaagacatatgaatagaa
taaaaagcataaaaactgaaagctgttttcatcccttccccacccctcct
cagtcattcttccacatggagatggataaacatttccaagcctaatatac
acatcaaattctcccattctacagaggacactgccgcattgaagttgaag
tgctcatgaaagaccacagagctggcaagtgctcaagctgaaattcaaat
ccaaattgtctgactcataattcagcgtgcattcctcccgctaagctcca
gggtgtaaaattttatggatgaagaaaccgaggctcagagaggtccctgg
ccatcagagccacatggttcactgcccagtatgggaaaagcggaggcgat
ggcattggctgcatggaggagagggccttggcttgagcagatctgagttt
gctcagggctacatgggtctagtttgcaaatccccttgctggttcggggc
tagcccaggttcttcgaggacaggctccaaccaaaaggagcctgccagag
ttggtggggtctcgagccccggggcgggcgcgggaaccgtgtccacagcg
tggctgcaagctctttagctgtacgggcacccggggtgggtggttgagtc
cggcgcgtggcgggcggggcacgggtggcgtgggccgatcctgccgcggg
gcagcgctgtcctgaggctccggtccgcggtggccactaccagaggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_95349590_95350630
seq2: B6Ng01-306P10.b_47_1110

seq1  GAATTCTCTTTGAAATACAGTGACCCTCTTAATCTTCCCGTGGGGTTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTGAAATACAGTGACCCTCTTAATCTTCCCGTGGGGTTTAG  50

seq1  GGTTGCTGTTGTTAGTTACAGAGTCTCGGGCTGGTCTCGAACTCACTACG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCTGTTGTTAGTTACAGAGTCTCGGGCTGGTCTCGAACTCACTACG  100

seq1  TAGCTGGGGAGGTTCTGAAGTCCTGTTCTTCCTGCCTTACCTTCCAAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGGGGAGGTTCTGAAGTCCTGTTCTTCCTGCCTTACCTTCCAAATG  150

seq1  TTGAATTATAGAGGCTTTTGTCGCCACTCCCTACACAGAAAATATTTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTATAGAGGCTTTTGTCGCCACTCCCTACACAGAAAATATTTTCA  200

seq1  AACAAGCACGTGCCATTCATGTTTAAATACAGGCTTAAAGAAACCTTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGCACGTGCCATTCATGTTTAAATACAGGCTTAAAGAAACCTTTTC  250

seq1  AGACCCTAAACCTCAATGCCCAGTGATATTTCCAGGTGATCTACTAGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCTAAACCTCAATGCCCAGTGATATTTCCAGGTGATCTACTAGTTC  300

seq1  ATTCTCCCACTTAAAAGGCTCAATAATGTTATCCCCTTTACCACCAGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCCCACTTAAAAGGCTCAATAATGTTATCCCCTTTACCACCAGATT  350

seq1  TCTTATTTTCTTTTTAAACAAATTTTGTTAAGTAACATAAGCAAAAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTTTCTTTTTAAACAAATTTTGTTAAGTAACATAAGCAAAAAAAA  400

seq1  AAAAGTCACACAAGGGCTGACAAGATGGCTCAGTATGTAAGGGCCCTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCACACAAGGGCTGACAAGATGGCTCAGTATGTAAGGGCCCTTGT  450

seq1  GGTCAAGCTTGACGACCTGAGTTTAATCACCTATCCCAGAGAGACTACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAAGCTTGACGACCTGAGTTTAATCACCTATCCCAGAGAGACTACCA  500

seq1  CGTCTCATAAGTCATCCTCTGACCTCCACACTCATGTGAGTAAATGCAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTCATAAGTCATCCTCTGACCTCCACACTCATGTGAGTAAATGCAAT  550

seq1  AAACTCACACTTTAAGTAATTATCACTGGACAACAACCTACCTTAAGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCACACTTTAAGTAATTATCACTGGACAACAACCTACCTTAAGCAG  600

seq1  TTTTGCTTTGGTTTATTTCTTTCAGCTTCTTTTTCTGTTATGATTTGTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTTTGGTTTATTTCTTTCAGCTTCTTTTTCTGTTATGATTTGTAG  650

seq1  GAGGAAACACTGTTACATATTCAACAAACATCCACCTGTAACTTCTGGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAACACTGTTACATATTCAACAAACATCCACCTGTAACTTCTGGGT  700

seq1  TTGTTTGTTTCATCTTTTGCTTTTGAGACACAGTCACACTATATAACTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTTCATCTTTTGCTTTTGAGACACAGTCACACTATATAACTGT  750

seq1  AGGTGGCCTGGAATCACTATGTAGATCAGACTGACCTTGAACTCTCAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGCCTGGAATCACTATGTAGATCAGACTGACCTTGAACTCTCAGAG  800

seq1  ATTCACCTGCCTCTGCCTTCCCAGTGCTGTCTCTT-GGGTGCTGTCTCAC  849
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATTCACCTGCCTCTGCCTTCCCAGTGCTGTCTCTTGGGGTGCTGTCTCAC  850

seq1  AGCTGCAGATGG--CCCAGGGCTTGGCTTATAAACCCAGGCCACC-TTGT  896
      ||||||||||||  || |||||||||||||||||||||||||||| ||||
seq2  AGCTGCAGATGGGCCCAAGGGCTTGGCTTATAAACCCAGGCCACCTTTGT  900

seq1  CCAGCTT-GAGTCAGTGTTTACAAACAGTAAAACC-CAGAAC-AAAAGAA  943
      ||||||| ||||||||||||||||||||||||||| |||||| |||||||
seq2  CCAGCTTGGAGTCAGTGTTTACAAACAGTAAAACCTCAGAACAAAAAGAA  950

seq1  -GAAA--GACAGGTTGGG-ACAGA--GGGACAGAGAAAGGGAC-AGA--G  984
       ||||   |||||||||| |||||  || |||||||||||||| |||  |
seq2  TGAAAAGAACAGGTTGGGAACAGAAGGGAACAGAGAAAGGGACAAGAAGG  1000

seq1  GGTCAG-AGGACAGGGGG--CGGGGGACGTC-ATAGTCAGTTGAAAA--G  1028
      | |||| |||||||||||  ||||||||||| |||||||||||||||  |
seq2  GTTCAGAAGGACAGGGGGGCCGGGGGACGTCAATAGTCAGTTGAAAAAGG  1050

seq1  GGTGAAG-TAGTGG  1041
      ||||||| ||||||
seq2  GGTGAAGTTAGTGG  1064

seq1: chr3_95491769_95492717
seq2: B6Ng01-306P10.g_69_1016 (reverse)

seq1  TGCCTCTGGTAGTGGCCACCGCGGCCCGGAGCCCCAGGACAGCGCCG-CC  49
      |||||||||||||||||||||||| |||||||| ||||||||||| | ||
seq2  TGCCTCTGGTAGTGGCCACCGCGGACCGGAGCCTCAGGACAGCGCTGCCC  50

seq1  CGCGGCAGGCTCCGCCCCACGCCACCCGTGCCCCGCCCGCCACGCGCCGG  99
      ||||||||| | || |||||||||||||||||||||||||||||||||||
seq2  CGCGGCAGGAT-CGGCCCACGCCACCCGTGCCCCGCCCGCCACGCGCCGG  99

seq1  ACTCAACCACCCACCCCGGGTGCCCCGTACAGCTAAAGAGCTTGCAGCCA  149
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ACTCAACCACCCACCCCGGGTG-CCCGTACAGCTAAAGAGCTTGCAGCCA  148

seq1  CGCTGTGGACACGGTTCCCGCGCCCGCCCCGGGGCTCGAGACCCCACCAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGTGGACACGGTTCCCGCGCCCGCCCCGGGGCTCGAGACCCCACCAA  198

seq1  CTCTGGCAGGCTCCTTTTGGTTGGAGCCTGTCCTCGAAGAACCTGGGCTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGCAGGCTCCTTTTGGTTGGAGCCTGTCCTCGAAGAACCTGGGCTA  248

seq1  GCCCCGAACCAGCAAGGGGATTTGCAAACTAGACCCATGTAGCCCTGAGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCGAACCAGCAAGGGGATTTGCAAACTAGACCCATGTAGCCCTGAGC  298

seq1  AAACTCAGATCTGCTCAAGCCAAGGCCCTCTCCTCCATGCAGCCAATGCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCAGATCTGCTCAAGCCAAGGCCCTCTCCTCCATGCAGCCAATGCC  348

seq1  ATCGCCTCCGCTTTTCCCATACTGGGCAGTGAACCATGTGGCTCTGATGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGCCTCCGCTTTTCCCATACTGGGCAGTGAACCATGTGGCTCTGATGG  398

seq1  CCAGGGACCTCTCTGAGCCTCGGTTTCTTCATCCATAAAATTTTACACCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGACCTCTCTGAGCCTCGGTTTCTTCATCCATAAAATTTTACACCC  448

seq1  TGGAGCTTAGCGGGAGGAATGCACGCTGAATTATGAGTCAGACAATTTGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCTTAGCGGGAGGAATGCACGCTGAATTATGAGTCAGACAATTTGG  498

seq1  ATTTGAATTTCAGCTTGAGCACTTGCCAGCTCTGTGGTCTTTCATGAGCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAATTTCAGCTTGAGCACTTGCCAGCTCTGTGGTCTTTCATGAGCA  548

seq1  CTTCAACTTCAATGCGGCAGTGTCCTCTGTAGAATGGGAGAATTTGATGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAACTTCAATGCGGCAGTGTCCTCTGTAGAATGGGAGAATTTGATGT  598

seq1  GTATATTAGGCTTGGAAATGTTTATCCATCTCCATGTGGAAGAATGACTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATTAGGCTTGGAAATGTTTATCCATCTCCATGTGGAAGAATGACTG  648

seq1  AGGAGGGGTGGGGAAGGGATGAAAACAGCTTTCAGTTTTTATGCTTTTTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGGGTGGGGAAGGGATGAAAACAGCTTTCAGTTTTTATGCTTTTTA  698

seq1  TTCTATTCATATGTCTTTTAATGGATTGTTGGTTTGTTGTTTGTCTTTGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTCATATGTCTTTTAATGGATTGTTGGTTTGTTGTTTGTCTTTGA  748

seq1  GGCAGGGTCTCGGTAGCCCTGTCTGGCTTGAACTGTGTAGACCAGGCCAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGGTCTCGGTAGCCCTGTCTGGCTTGAACTGTGTAGACCAGGCCAG  798

seq1  CCTTCAACTCATGGAGATCCACCTGCTATTGCTTACTGCAGTGTTGGGAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAACTCATGGAGATCCACCTGCTATTGCTTACTGCAGTGTTGGGAT  848

seq1  TAAAGGCCTGCCTATGCCTTGCCTGTCCAACCTCGTAACTTCTTTGAAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGCCTGCCTATGCCTTGCCTGTCCAACCTCGTAACTTCTTTGAAAA  898

seq1  ACAAAAACGTATAGGTTGTTCGATACTAGACTGGTCTTCAGGGTGAATTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAACGTATAGGTTGTTCGATACTAGACTGGTCTTCAGGGTGAATTC  948