BAC Information

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BAC

Clone NameB6Ng01-306P17
Chromosome3 (Build37)
Map Location 106,290,573 - 106,291,735
singlet/doubletsinglet
Overlap geneDennd2d
Upstream geneKcnd3, Ddx20, 6530418L21Rik, Rap1a, EG433637, Adora3, I830077J02Rik, Atp5f1, Wdr77, Ovgp1, 1700027A23Rik, LOC100043591, Bclp2, LOC100043594, LOC670819, LOC100043129, Chia, Chi3l3, Chi3l4, EG624696, BC051070, 2010016I18Rik
Downstream geneCept1, Tmem77, LOC100043608, 4933421E11Rik, Cd53, Olfr266, Kcna3, AI504432, Kcna2, Kcna10, Gm131, A630076J17Rik, Prok1, Hbxip, Slc16a4, Rbm15, LOC383901, Kcnc4, Slc6a17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-306P17.bB6Ng01-306P17.g
ACCGA099876GA099877
length1,1661,178
definitionB6Ng01-306P17.b B6Ng01-306P17.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaacccaaggttacattgatgtggcccagaacaaattgctttct
ctttgaggttcttccagctagacttagagttcagactgtatggtaccaac
caaaggcacctttgtaccccatgttggtcagaaagaaggctgacaggctt
ctgacctctgcttctttgcctaaattccactgtcttttcctgacagaggg
agaacctgctccgaggtcagcaggaggaggaggaccggttgctcagtgcc
atccctttgttctgcttccctgatggaaatgagtgggcaccactcacaga
gtatcccaggtaaccactcagcctgcaggaaagggtatcagatttggata
gaagggcaaatgcgtggctcttgtcccctcacctggtatgaatgctgagt
ttttgccagggaaatattttgcttgggatcctttagacaaatgattgaag
ctgtgacttgactttctctctgaagactttaaagagtctcttacctcttc
ctagaagaagaaattgccttttaaaaatgtttttatttatttatcttttt
ctactctggactggagagaaagactttggcctctacaataaggaaatggt
tcttgcttgcatcatgaacactggaagcagaccaggacttcaatttttag
ataagaagtaacctcagagccttacttacctggtccttaaagtggtgata
ataattgaaccttcttcagaaatgtttagttgagtctcgaatgaggcgat
gcattagagcttgacaccatcaagtgcttagtaagtgactgctgtgatta
tccccatgattaatcagcagctcccctttgtcttcctctcccctcctctg
aagctgacttcactcttgttttaggatccagtgagcaaatgaacaccatt
ggtctgctctctcttagggagaccttctcatttgtcctgaccaatgtgga
tgggagcaggaagatcggatactgcaggcgcctcctgttggtgcaattca
gaaccgccccttctctccaaggctgggcttgccaagaacacggctacaaa
gctttagccttggtggattggtgcatgtaagggagattactcattcagca
tggtgcgcatgtttaggtgtcctttcagaattcccacaagaacaaggaac
gtgcctgacccctctc
gaattctcacctgaggaataccgaatggcagagaagcacccgaaaaaatg
ttcaacatccttaatcatcagggaaattcaaatcaaaacaaccctgagat
tccacctcacaccactcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcttccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagtaatacctctcctgggc
atatatccagaagatttcccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccacaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcataggcaa
atggatggacctggaggtcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtaatcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttgctaaacacatgaaactcaag
actaatgaagactgaagtgtggacactatgcccctccttagaattgggaa
caaaacacccatggaaggagttacagagacaaagtttggagcttagacga
aaggatggaccatctagagactgccatatccagggatcctccccataatc
agctttgcaaacgctgacaccattgcatacacttagcaagattttatgga
aaggtcccagatgtagctgtctcttgtgagactatgccggggcctagcaa
acatagaagttggatgctcacatcagcctattagatggatccacaggctt
ccaatgaaggagcttaggagaaagtacccaaggagcctaaggattctgca
accttaataggtggaacaacatcatggaacttaccagtaccccgggagct
ctgacctctagctgcatatggtatatcaaaagatggccttgctcgcccac
tcactgaagaaaggccatggacaggccaatgtattgcccgagtaccggaa
cagctccagtggccccataaatgtggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_106290573_106291735
seq2: B6Ng01-306P17.b_48_1213

seq1  GAATTCCAACCCAAGGTTACATTGATGTGGCCCAGAACAAATTGCTTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACCCAAGGTTACATTGATGTGGCCCAGAACAAATTGCTTTCT  50

seq1  CTTTGAGGTTCTTCCAGCTAGACTTAGAGTTCAGACTGTATGGTACCAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAGGTTCTTCCAGCTAGACTTAGAGTTCAGACTGTATGGTACCAAC  100

seq1  CAAAGGCACCTTTGTACCCCATGTTGGTCAGAAAGAAGGCTGACAGGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGCACCTTTGTACCCCATGTTGGTCAGAAAGAAGGCTGACAGGCTT  150

seq1  CTGACCTCTGCTTCTTTGCCTAAATTCCACTGTCTTTTCCTGACAGAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCTCTGCTTCTTTGCCTAAATTCCACTGTCTTTTCCTGACAGAGGG  200

seq1  AGAACCTGCTCCGAGGTCAGCAGGAGGAGGAGGACCGGTTGCTCAGTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCTGCTCCGAGGTCAGCAGGAGGAGGAGGACCGGTTGCTCAGTGCC  250

seq1  ATCCCTTTGTTCTGCTTCCCTGATGGAAATGAGTGGGCACCACTCACAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTTTGTTCTGCTTCCCTGATGGAAATGAGTGGGCACCACTCACAGA  300

seq1  GTATCCCAGGTAACCACTCAGCCTGCAGGAAAGGGTATCAGATTTGGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCCAGGTAACCACTCAGCCTGCAGGAAAGGGTATCAGATTTGGATA  350

seq1  GAAGGGCAAATGCGTGGCTCTTGTCCCCTCACCTGGTATGAATGCTGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGCAAATGCGTGGCTCTTGTCCCCTCACCTGGTATGAATGCTGAGT  400

seq1  TTTTGCCAGGGAAATATTTTGCTTGGGATCCTTTAGACAAATGATTGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCCAGGGAAATATTTTGCTTGGGATCCTTTAGACAAATGATTGAAG  450

seq1  CTGTGACTTGACTTTCTCTCTGAAGACTTTAAAGAGTCTCTTACCTCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGACTTGACTTTCTCTCTGAAGACTTTAAAGAGTCTCTTACCTCTTC  500

seq1  CTAGAAGAAGAAATTGCCTTTTAAAAATGTTTTTATTTATTTATCTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAGAAGAAATTGCCTTTTAAAAATGTTTTTATTTATTTATCTTTTT  550

seq1  CTACTCTGGACTGGAGAGAAAGACTTTGGCCTCTACAATAAGGAAATGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCTGGACTGGAGAGAAAGACTTTGGCCTCTACAATAAGGAAATGGT  600

seq1  TCTTGCTTGCATCATGAACACTGGAAGCAGACCAGGACTTCAATTTTTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTTGCATCATGAACACTGGAAGCAGACCAGGACTTCAATTTTTAG  650

seq1  ATAAGAAGTAACCTCAGAGCCTTACTTACCTGGTCCTTAAAGTGGTGATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAAGTAACCTCAGAGCCTTACTTACCTGGTCCTTAAAGTGGTGATA  700

seq1  ATAATTGAACCTTCTTCAGAAATGTTTAGTTGAGTCTCGAATGAGGCGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTGAACCTTCTTCAGAAATGTTTAGTTGAGTCTCGAATGAGGCGAT  750

seq1  GCATTAGAGCTTGACACCATCAAGTGCTTAGTAAGTGACTGCTGTGATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTAGAGCTTGACACCATCAAGTGCTTAGTAAGTGACTGCTGTGATTA  800

seq1  TCCCCATGATTAATCAGCAGCTCCCCTTTGTCTTCCTCTCCCCTCCTCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCATGATTAATCAGCAGCTCCCCTTTGTCTTCCTCTCCCCTCCTCTG  850

seq1  AAGCTGACTTCACTCTTGTTTTAGGATCCAGTGAGCAAATGAACACCATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGACTTCACTCTTGTTTTAGGATCCAGTGAGCAAATGAACACCATT  900

seq1  GGTCTGCTCTCTCTTAGGGAGACCTTCTCATTTGTCCTGACCAATGTGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGCTCTCTCTTAGGGAGACCTTCTCATTTGTCCTGACCAATGTGGA  950

seq1  TGGGAGCAGGAAGATCGGATACTGCAGGCGCCTCCTGGTTGGTGCAATTC  1000
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TGGGAGCAGGAAGATCGGATACTGCAGGCGCCTCCT-GTTGGTGCAATTC  999

seq1  AGAACCGCCCCTTCCTCTCCAAGGCTGGGCTTGCCAAAGACACGGCTACA  1050
      ||||||||||||| |||||||||||||||||||||||  |||||||||||
seq2  AGAACCGCCCCTT-CTCTCCAAGGCTGGGCTTGCCAAGAACACGGCTACA  1048

seq1  AAAGCTTAGGCTTGGTGGGAATGGTGCATGT-AGGGAGAATACACA-TCA  1098
      ||   |||| |||||| ||| |||||||||| ||||||| ||| || |||
seq2  AAGCTTTAGCCTTGGT-GGATTGGTGCATGTAAGGGAGATTACTCATTCA  1097

seq1  GCATGTGCCGCCATGTT--AGTGTCCCTTCAGGAATCCCACAAGAACAAG  1146
      |||||   || ||||||   |||||| ||||| | |||||||||||||||
seq2  GCATGGTGCG-CATGTTTAGGTGTCCTTTCAGAATTCCCACAAGAACAAG  1146

seq1  G-ACGTG-CTG-CCCCTCTC  1163
      | ||||| ||| ||||||||
seq2  GAACGTGCCTGACCCCTCTC  1166