BAC Information

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BAC

Clone NameB6Ng01-307D09
Chromosome3 (Build37)
Map Location 49,689,224 - 49,816,224
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666230, 4932443G14, LOC545519, LOC676568, LOC666247, LOC100039579, LOC100039587, LOC638779, Pcdh18
Downstream geneLOC100039628, LOC639469, Slc7a11, EG621304, LOC100039667
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-307D09.bB6Ng01-307D09.g
ACCGA100040GA100041
length9471,130
definitionB6Ng01-307D09.b B6Ng01-307D09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,815,269 - 49,816,224)(49,689,224 - 49,690,343)
sequence
gaattctatttgtagctgaaacatctggacaggaaataagaaagttcaat
cgattttctagtgtaaatctcaagggactctcctggctaaagcacagctc
cttacagcaggaaaataagtcactatttctgtctgctgcactaggtctgc
acagaccgtgggctatggaatatggaagaattagatgaacatgaaggcag
aagagctgaacacagtactgaagttcacactgggcatataaagtgtctct
gtaggatcaacacagacaaaaggaatgctatttcaagtatctgttaaacc
aacgcatcttatctatggagataatttgtaaagaatatacacaatgagtt
ttagaggtgaactcatggagtaatgaggaaatagcaatgacatcttatga
atgtatagttcctcgaacaggccaactgtagtgaaatgtgattatcagag
gctgggtggttgaagattaaaaaccataaaaatgcacatataaaatgaaa
taaaatttaactcaatgattgcttgaacactgtttttccataactgtatg
gtttacatgcaaaacaaatattactctgtacctcaaatgttttattcata
gaaaatagtttcttttgcaactcagccacaaatttccctcccccagatat
attttgtcttagtatatggtcagtgttcgcaggtgttgtgggtattcaga
gacttttggaaaaccagaagtttctactggagaacaggttcctagctggt
gatgcagcatggaggggagactgcattatgttgttgaaatggtaagttaa
ttatttttataggacggacaatattgatgggtagttaaaaaaaagtctct
ggagaatgcaatatactcgaggaaggttctcgaagtctcttgaggtgtat
ataggagggtgaccactttatgtgcatcactggtcactatggcaact
gaattctttgtttagctctgagccccatttttaatggggttatttgattt
ttttggagtccaccttcttgagttctttatataattttttaaaaagggaa
aaaaaaacaaagaaaacatagcagctcttggtagagttgggcttgtttct
aagatgtctatgtcatcttatgtctcagcagtcacaggacagcagcaaca
acttttatatgtgggaactgtgtggtttttctatcgtcctagaacataag
gacagagtcttgttcaatagtcttggcaggtgctttctttggcttttagg
aatatgacttcatttgatggatatatttttagttccccctgggaagttgc
aaagtggaattactttcttgtcttcctatttgttatttttatggcaggtc
cttagctatagatacatgtttgcctgggataaatagccctgccagagtag
catgacattatgcagttagcactgagagttttttcttttttagcactgat
ctttgtatggtctgaaaagaattcatggaaacataaaaaccacattatga
aaataatctcacaaaaattaaaattttgttgttaatctagaattgtacaa
tttccactacatactttctgtgtgtgtgtgtaacattcaggagtctagtt
gggaagtaaatatgtttaaataaatgatatgtaatatataaaaatctcaa
aaataattttaaagtattgtattaaaactaatagcgaaaaaaatctctga
acaataaaaagtataagcaaatttaaaacaatataaaagtttagcataga
atatgcttattaaaggtttaaattgtaatatcaattttctacctgtggaa
agcaattaaattactgttttcttatatcctaatatttaactagactataa
gactgggtttgatattctgttcacatcaggtcattttatttacatgttac
acatcacttaataccccattccagacatcaaactttaagcaacaggaaat
gcagattttttatcttttgaaatgtttttctgtcactgtagtgtaaatgg
aataaaagtgggttagatccttaggacgttgcctttcatagagccgtaag
agaaatgacagccatcatgacagaaatgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_49815269_49816224
seq2: B6Ng01-307D09.b_48_994 (reverse)

seq1  AGTTGCCATTAAGTGAAACACAGTGATGCAAACATAAAAGTGGTCACCCC  50
      |||||||||  |||||    |||||||||  |||| ||||||||||||| 
seq2  AGTTGCCAT--AGTGA---CCAGTGATGC--ACAT-AAAGTGGTCACCCT  42

seq1  TTCATAATCACCTTCAGAGACTTTCTGAGAA-CTTCCTCTGAGTATATTT  99
         |||  |||||  ||||||||   ||||| ||||||| ||||||| ||
seq2  CCTATATACACCTCAAGAGACTT--CGAGAACCTTCCTC-GAGTATA-TT  88

seq1  GCATTCTC---AGACTTTTTTTTTTACTA-CCATTCATATTGTTCCTGTC  145
      ||||||||   |||| |||||||| |||| ||||  |||||||  | |||
seq2  GCATTCTCCAGAGAC-TTTTTTTTAACTACCCATCAATATTGT--CCGTC  135

seq1  TTAT-ATAATAATTATACTGTACCATTTCAACAACATAATGCAAGTCTCC  194
       ||| | |||||||| ||| |||||||||||||||||||||| |||||||
seq2  CTATAAAAATAATTA-ACT-TACCATTTCAACAACATAATGC-AGTCTCC  182

seq1  C--TCATGCTGCATCA-CAGCTAGGAACCTG-TCTCCAGTAGAAACTTCT  240
      |   |||||||||||| |||||||||||||| ||||||||||||||||||
seq2  CCTCCATGCTGCATCACCAGCTAGGAACCTGTTCTCCAGTAGAAACTTCT  232

seq1  GGTTTTCCAAAAGTCTCTGAATACCCACAACACCCTGCGAACACTGACCA  290
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GGTTTTCCAAAAGTCTCTGAATACCCACAACA-CCTGCGAACACTGACCA  281

seq1  TATACTAAGACAAAATATATCTGGGGGAGGGAAATTTGTGGCTGAGTTGC  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTAAGACAAAATATATCTGGGGGAGGGAAATTTGTGGCTGAGTTGC  331

seq1  AAAAGAAACTATTTTCTATGAATAAAACATTTGAGGTACAGAGTAATATT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAACTATTTTCTATGAATAAAACATTTGAGGTACAGAGTAATATT  381

seq1  TGTTTTGCATGTAAACCATACAGTTATGGAAAAACAGTGTTCAAGCAATC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGCATGTAAACCATACAGTTATGGAAAAACAGTGTTCAAGCAATC  431

seq1  ATTGAGTTAAATTTTATTTCATTTTATATGTGCATTTTTATGGTTTTTAA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGTTAAATTTTATTTCATTTTATATGTGCATTTTTATGGTTTTTAA  481

seq1  TCTTCAACCACCCAGCCTCTGATAATCACATTTCACTACAGTTGGCCTGT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAACCACCCAGCCTCTGATAATCACATTTCACTACAGTTGGCCTGT  531

seq1  TCGAGGAACTATACATTCATAAGATGTCATTGCTATTTCCTCATTACTCC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGGAACTATACATTCATAAGATGTCATTGCTATTTCCTCATTACTCC  581

seq1  ATGAGTTCACCTCTAAAACTCATTGTGTATATTCTTTACAAATTATCTCC  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTTCACCTCTAAAACTCATTGTGTATATTCTTTACAAATTATCTCC  631

seq1  ATAGATAAGATGCGTTGGTTTAACAGATACTTGAAATAGCATTCCTTTTG  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATAAGATGCGTTGGTTTAACAGATACTTGAAATAGCATTCCTTTTG  681

seq1  TCTGTGTTGATCCTACAGAGACACTTTATATGCCCAGTGTGAACTTCAGT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTTGATCCTACAGAGACACTTTATATGCCCAGTGTGAACTTCAGT  731

seq1  ACTGTGTTCAGCTCTTCTGCCTTCATGTTCATCTAATTCTTCCATATTCC  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTTCAGCTCTTCTGCCTTCATGTTCATCTAATTCTTCCATATTCC  781

seq1  ATAGCCCACGGTCTGTGCAGACCTAGTGCAGCAGACAGAAATAGTGACTT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCCACGGTCTGTGCAGACCTAGTGCAGCAGACAGAAATAGTGACTT  831

seq1  ATTTTCCTGCTGTAAGGAGCTGTGCTTTAGCCAGGAGAGTCCCTTGAGAT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCTGCTGTAAGGAGCTGTGCTTTAGCCAGGAGAGTCCCTTGAGAT  881

seq1  TTACACTAGAAAATCGATTGAACTTTCTTATTTCCTGTCCAGATGTTTCA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACTAGAAAATCGATTGAACTTTCTTATTTCCTGTCCAGATGTTTCA  931

seq1  GCTACAAATAGAATTC  956
      ||||||||||||||||
seq2  GCTACAAATAGAATTC  947

seq1: chr3_49689224_49690343
seq2: B6Ng01-307D09.g_62_1191

seq1  GAATTCTTTGTTTAGCTCTGAGCCCCATTTTTAATGGGGTTATTTGATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCTCTGAGCCCCATTTTTAATGGGGTTATTTGATTT  50

seq1  TTTTGGAGTCCACCTTCTTGAGTTCTTTATATAATTTTTTAAAAAGGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGAGTCCACCTTCTTGAGTTCTTTATATAATTTTTTAAAAAGGGAA  100

seq1  AAAAAAACAAAGAAAACATAGCAGCTCTTGGTAGAGTTGGGCTTGTTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACAAAGAAAACATAGCAGCTCTTGGTAGAGTTGGGCTTGTTTCT  150

seq1  AAGATGTCTATGTCATCTTATGTCTCAGCAGTCACAGGACAGCAGCAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTCTATGTCATCTTATGTCTCAGCAGTCACAGGACAGCAGCAACA  200

seq1  ACTTTTATATGTGGGAACTGTGTGGTTTTTCTATCGTCCTAGAACATAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTATATGTGGGAACTGTGTGGTTTTTCTATCGTCCTAGAACATAAG  250

seq1  GACAGAGTCTTGTTCAATAGTCTTGGCAGGTGCTTTCTTTGGCTTTTAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGTCTTGTTCAATAGTCTTGGCAGGTGCTTTCTTTGGCTTTTAGG  300

seq1  AATATGACTTCATTTGATGGATATATTTTTAGTTCCCCCTGGGAAGTTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGACTTCATTTGATGGATATATTTTTAGTTCCCCCTGGGAAGTTGC  350

seq1  AAAGTGGAATTACTTTCTTGTCTTCCTATTTGTTATTTTTATGGCAGGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGGAATTACTTTCTTGTCTTCCTATTTGTTATTTTTATGGCAGGTC  400

seq1  CTTAGCTATAGATACATGTTTGCCTGGGATAAATAGCCCTGCCAGAGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCTATAGATACATGTTTGCCTGGGATAAATAGCCCTGCCAGAGTAG  450

seq1  CATGACATTATGCAGTTAGCACTGAGAGTTTTTTCTTTTTTAGCACTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACATTATGCAGTTAGCACTGAGAGTTTTTTCTTTTTTAGCACTGAT  500

seq1  CTTTGTATGGTCTGAAAAGAATTCATGGAAACATAAAAACCACATTATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTATGGTCTGAAAAGAATTCATGGAAACATAAAAACCACATTATGA  550

seq1  AAATAATCTCACAAAAATTAAAATTTTGTTGTTAATCTAGAATTGTACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATCTCACAAAAATTAAAATTTTGTTGTTAATCTAGAATTGTACAA  600

seq1  TTTCCACTACATACTTTCTGTGTGTGTGTGTAACATTCAGGAGTCTAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCACTACATACTTTCTGTGTGTGTGTGTAACATTCAGGAGTCTAGTT  650

seq1  GGGAAGTAAATATGTTTAAATAAATGATATGTAATATATAAAAATCTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGTAAATATGTTTAAATAAATGATATGTAATATATAAAAATCTCAA  700

seq1  AAATAATTTTAAAGTATTGTATTAAAACTAATAGCGAAAAAAATCTCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATTTTAAAGTATTGTATTAAAACTAATAGCGAAAAAAATCTCTGA  750

seq1  ACAATAAAAAGTATAAGCAAATTTAAAACAATATAAAAGTTTAGCATAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAAAAAGTATAAGCAAATTTAAAACAATATAAAAGTTTAGCATAGA  800

seq1  ATATGCTTATTAAAGGTTTAAATTGTAATATCAATTTTCTACCTGTGGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCTTATTAAAGGTTTAAATTGTAATATCAATTTTCTACCTGTGGAA  850

seq1  AGCAATTAAATTACTG-TTTCTTATATCCTAATATTTAACTAGACTATAA  899
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGCAATTAAATTACTGTTTTCTTATATCCTAATATTTAACTAGACTATAA  900

seq1  GACT-GGTTTGATATTCTGTTCACATCAGGTCA-TTTATTTACATGTTAC  947
      |||| |||||||||||||||||||||||||||| ||||||||||||||||
seq2  GACTGGGTTTGATATTCTGTTCACATCAGGTCATTTTATTTACATGTTAC  950

seq1  ACATCACTTAATACCCCATTCCAGACATCAAACTTTAAAGCAACAGG-AA  996
      |||||||||||||||||||||||||||||||||||| |||||||||| ||
seq2  ACATCACTTAATACCCCATTCCAGACATCAAACTTT-AAGCAACAGGAAA  999

seq1  TGCAGA-TTTTTATCTTTGAAAATG-TTTTCTGTCACTGTAGTGTAAAT-  1043
      |||||| |||||||||||  ||||| ||||||||||||||||||||||| 
seq2  TGCAGATTTTTTATCTTTTGAAATGTTTTTCTGTCACTGTAGTGTAAATG  1049

seq1  GAATAAAAGTGGG-TAGATCCTTAGACAGTTGCC-TTCATAGAG-CGTAA  1090
      ||||||||||||| |||||||||||   |||||| ||||||||| |||||
seq2  GAATAAAAGTGGGTTAGATCCTTAGGACGTTGCCTTTCATAGAGCCGTAA  1099

seq1  GAGAAATGACAG-CATCATGACAGAAATGCA  1120
      |||||||||||| ||||||||||||||||||
seq2  GAGAAATGACAGCCATCATGACAGAAATGCA  1130