BAC Information

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BAC

Clone NameB6Ng01-307G14
Chromosome3 (Build37)
Map Location 105,070,556 - 105,239,489
singlet/doubletdoublet
Overlap genenone
Upstream geneEG433634, LOC668622, Lrig2, Slc16a1, EG624251, 7530404M11Rik, Ppm1j, Rhoc, Mov10, Capza1, St7l, LOC100043572, Wnt2b, Cttnbp2nl, 4930564D02Rik
Downstream gene1700095B22Rik, Kcnd3, Ddx20, 6530418L21Rik, Rap1a, EG433637, Adora3, I830077J02Rik, Atp5f1, Wdr77, Ovgp1, 1700027A23Rik, LOC100043591, Bclp2, LOC100043594, LOC670819, LOC100043129, Chia, Chi3l3, Chi3l4, EG624696, BC051070
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-307G14.bB6Ng01-307G14.g
ACCGA100192GA100193
length1,1531,153
definitionB6Ng01-307G14.b B6Ng01-307G14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,070,556 - 105,071,703)(105,238,356 - 105,239,489)
sequence
gaattcttactatatatcatacagcaagttaagagtgtcaggaaatatat
actgttcactacctatgaacacccctgtaaagatatctctccattatatg
aaaagaaaacgatgtctcagtgaggtttaaatgactagtttacaagtagt
aactggtagagcaaagatttcaacccagattagcatgatggcaaaacctg
cacacttaattttaccccactgccttttttaaagctgggaagggttccag
tgaaggcagaggagacagatgcaatgaatgaggggttgcctaagaggaca
agtacactgcatgctgggaaacactagttgactaagatgaaggggaatct
aacctgaagggaaaaaagtatattagtatatgacactagtgaatgaggcg
ttgtgaaatttctagagatgaatatagtgtgttagcagcttcccactcta
tttccctgctgactggagtctcataacgtgtgtctttattgctgttttgg
ctcccagtcatgaaagtctctaacctgagatgagcccacaccttttctct
gactcagatcatcatccatctgggatggagcagggacagcagcagacttg
atccccgaatgagtgaattcttgactgaaacaagaacccaggagaacaac
acagtgttacaattagctgagatttataacttgacacaaatgctgctcat
tttggatattcagtttttccattttcgctccagttgtttaaagacattcc
acgagcatccttgtggctctgcatcccaggggatattcccagggagagac
tgctttatgactcaaagagagaaagggtagagtaaatggaggtgcatgcc
ttctacttatgtcccaaattaaccgctcttactcaggaataagtatgttt
gagattcaactgaatgtcagttcacagactagtatatattaatgattatt
agtacaatcaatattgatgcactctatagtgtcagatggtagggctctac
aggatggttctgggctgtttcatgatgcttagaagaaaactgaatgagac
tacacgccaatgcttcactttacaatatagtatgggaaaaaaacagatgg
ttttaataatctctgatttgaaagaacctggtgtgacttttaacaattct
ttg
gaattcacttagagttgtctccaagctagtctgtctacctctgtctgcct
gcaacctggaagggtacagcccagggataaaaggcaaaacagaggaggag
ttggtggcttgggccctgctgtgtttttcctgatttaggggtcctcctta
gaggtaaacagaaaattgtggagaaatggtctttccatcttcctcactgc
tgccctttactatgtagaaaagcatggtcagcaaatgtggaaaatacatt
gaaagcatcttgcattcctcggtattctgttagtcactcagcagcacttc
ctgagaactgattattcaggctctgctgtttttctctggattgcagaggt
ttcatacctcagcatccagagcagcagaaacaacccccaaatgacacata
gccatgtggctattgctctgagattcaggagaacaaccagccataggcag
gctctaagaaggagactagggactatggggacctgtcttttttcccctta
tctcaaaagggagacttatgaagcccaggatgctgagaacatggagcagg
agcagaaggtctccagactgagcagtagaatgggaccattgatcagggat
cttgagaagcaattcagattccttccttccaccatccatcctatttcaga
tgaagctaccacggagagacagacaggaagggtgggagcccatgtcatgg
aactggagggttcttgaggtaggcagattcttctatggccatccccactc
tcctggagataggaaggctgtcctaggctagagatggtggaatatttgcg
agaccctggccttttttatcactgtgtgaaactaacagccacacatgtct
ataactccagccatgaacccagcagctaaagggctgggaagcaacagtga
cggaagcccagccaagactttgggagaaatcacagtcaaggaggatgata
aatgagcaagacccaagggatgcgtactagaaactccagcaagggcccag
ggcacctctgggaagcccagtgcttgagaagaggataccaccaacagaac
agtccatgctgacttatattggtgatgtgaataggaaggcctttctggag
aacaagtcatttgtacagaacacgatggtgaccaatactcagagaagagt
gtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_105070556_105071703
seq2: B6Ng01-307G14.b_44_1196

seq1  GAATTCTTACTATATATCATACAGCAAGTTAAGAGTGTCAGGAAATATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACTATATATCATACAGCAAGTTAAGAGTGTCAGGAAATATAT  50

seq1  ACTGTTCACTACCTATGAACACCCCTGTAAAGATATCTCTCCATTATATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTCACTACCTATGAACACCCCTGTAAAGATATCTCTCCATTATATG  100

seq1  AAAAGAAAACGATGTCTCAGTGAGGTTTAAATGACTAGTTTACAAGTAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAACGATGTCTCAGTGAGGTTTAAATGACTAGTTTACAAGTAGT  150

seq1  AACTGGTAGAGCAAAGATTTCAACCCAGATTAGCATGATGGCAAAACCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGTAGAGCAAAGATTTCAACCCAGATTAGCATGATGGCAAAACCTG  200

seq1  CACACTTAATTTTACCCCACTGCCTTTTTTAAAGCTGGGAAGGGTTCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTTAATTTTACCCCACTGCCTTTTTTAAAGCTGGGAAGGGTTCCAG  250

seq1  TGAAGGCAGAGGAGACAGATGCAATGAATGAGGGGTTGCCTAAGAGGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGCAGAGGAGACAGATGCAATGAATGAGGGGTTGCCTAAGAGGACA  300

seq1  AGTACACTGCATGCTGGGAAACACTAGTTGACTAAGATGAAGGGGAATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACACTGCATGCTGGGAAACACTAGTTGACTAAGATGAAGGGGAATCT  350

seq1  AACCTGAAGGGAAAAAAGTATATTAGTATATGACACTAGTGAATGAGGCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGAAGGGAAAAAAGTATATTAGTATATGACACTAGTGAATGAGGCG  400

seq1  TTGTGAAATTTCTAGAGATGAATATAGTGTGTTAGCAGCTTCCCACTCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAAATTTCTAGAGATGAATATAGTGTGTTAGCAGCTTCCCACTCTA  450

seq1  TTTCCCTGCTGACTGGAGTCTCATAACGTGTGTCTTTATTGCTGTTTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTGCTGACTGGAGTCTCATAACGTGTGTCTTTATTGCTGTTTTGG  500

seq1  CTCCCAGTCATGAAAGTCTCTAACCTGAGATGAGCCCACACCTTTTCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGTCATGAAAGTCTCTAACCTGAGATGAGCCCACACCTTTTCTCT  550

seq1  GACTCAGATCATCATCCATCTGGGATGGAGCAGGGACAGCAGCAGACTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAGATCATCATCCATCTGGGATGGAGCAGGGACAGCAGCAGACTTG  600

seq1  ATCCCCGAATGAGTGAATTCTTGACTGAAACAAGAACCCAGGAGAACAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCGAATGAGTGAATTCTTGACTGAAACAAGAACCCAGGAGAACAAC  650

seq1  ACAGTGTTACAATTAGCTGAGATTTATAACTTGACACAAATGCTGCTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTTACAATTAGCTGAGATTTATAACTTGACACAAATGCTGCTCAT  700

seq1  TTTGGATATTCAGTTTTTCCATTTTCGCTCCAGTTGTTTAAAGACATTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGATATTCAGTTTTTCCATTTTCGCTCCAGTTGTTTAAAGACATTCC  750

seq1  ACGAGCATCCTTGTGGCTCTGCATCCCAGGGGATATT-CCAGGGAGAGAC  799
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ACGAGCATCCTTGTGGCTCTGCATCCCAGGGGATATTCCCAGGGAGAGAC  800

seq1  TGCTTTATGACTCAAAGAGAG-AAGGGTAGAGTAAATGGAGGTGCATGCC  848
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGCTTTATGACTCAAAGAGAGAAAGGGTAGAGTAAATGGAGGTGCATGCC  850

seq1  TTCTACTTATGTCCCAAATTAACCGCTCTTACTCAGGGAATAAGTATG-T  897
      ||||||||||||||||||||||||||||||||||| |||||||||||| |
seq2  TTCTACTTATGTCCCAAATTAACCGCTCTTACTCA-GGAATAAGTATGTT  899

seq1  TGAGATTCAACTGAATGTCAGTTCACAGACTAGTATATATTAATGATTAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTCAACTGAATGTCAGTTCACAGACTAGTATATATTAATGATTAT  949

seq1  TAGTACAATCAATATTGATGCACTCTATAGTGTCAGATGGTAGGGCTCTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACAATCAATATTGATGCACTCTATAGTGTCAGATGGTAGGGCTCTA  999

seq1  CAGGATGGTTCT-GGCTGTTTTCATGATGCTTAGA--GAAACTGAATGAG  1044
      |||||||||||| ||||| ||||||||||||||||   ||||||||||||
seq2  CAGGATGGTTCTGGGCTG-TTTCATGATGCTTAGAAGAAAACTGAATGAG  1048

seq1  GAACTACAACGCAAATGC-TCAC-TTAC-ATATAGTATGGG-AAAAAACA  1090
        ||||| |||| ||||| |||| |||| |||||||||||| ||||||||
seq2  --ACTAC-ACGCCAATGCTTCACTTTACAATATAGTATGGGAAAAAAACA  1095

seq1  GAT-GTTTTAATATTCTCTTGTTTG-AAGACCCTGGTTTGTGACTTTTAA  1138
      ||| ||||||||| |||||  |||| |||| |||||  ||||||||||||
seq2  GATGGTTTTAATAATCTCTGATTTGAAAGAACCTGG--TGTGACTTTTAA  1143

seq1  CAATTCTTTG  1148
      ||||||||||
seq2  CAATTCTTTG  1153

seq1: chr3_105238356_105239489
seq2: B6Ng01-307G14.g_66_1218 (reverse)

seq1  CACACT----TCTGAGTATTTGTTCACATCGTTGTCTGTACAAAATGACT  46
      ||||||    |||||||||| ||   ||||||  ||||||| ||||||||
seq2  CACACTCTTCTCTGAGTATTGGTCACCATCGTGTTCTGTAC-AAATGACT  49

seq1  TTGTCT-CAGAAA-GCCTTCCTAT---CATCACCAATATAAGTCAGCAT-  90
      |  ||| |||||| ||||||||||   |||||||||||||||||||||| 
seq2  TGTTCTCCAGAAAGGCCTTCCTATTCACATCACCAATATAAGTCAGCATG  99

seq1  GACTTGTCTGT--GT-GTATCCTTCTTCTCAAAGCACTGGGCTT-CCAGA  136
      ||||  |||||  || |||||| ||||||| ||||||||||||| |||||
seq2  GACTGTTCTGTTGGTGGTATCC-TCTTCTC-AAGCACTGGGCTTCCCAGA  147

seq1  -GTGCC--TGGCCCTTGCTGGAG-TTCTAGTACGCATCCCTT-GGTCTTG  181
       |||||   |||||||||||||| |||||||||||||||||| |||||||
seq2  GGTGCCCTGGGCCCTTGCTGGAGTTTCTAGTACGCATCCCTTGGGTCTTG  197

seq1  CTCATTTATCATCCTCCTTGACTGTGATTTCT-CCAAAGTCTTGGCTGGG  230
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTCATTTATCATCCTCCTTGACTGTGATTTCTCCCAAAGTCTTGGCTGGG  247

seq1  CTTCCGTCACTGTTGCTTCCCAG-CCTTTAGCTGCT-GGTTCATGGCTGG  278
      ||||||||||||||||||||||| |||||||||||| |||||||||||||
seq2  CTTCCGTCACTGTTGCTTCCCAGCCCTTTAGCTGCTGGGTTCATGGCTGG  297

seq1  AGTTATAGACATGTGTGGCTGTTAGTTTCACACAGTGATAAAAAAGGCCA  328
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATAGACATGTGTGGCTGTTAGTTTCACACAGTGATAAAAAAGGCCA  347

seq1  GGGTCTCGCAAATATTCCACCATCTCTAGCCTAGGACAGCCTTCCTATCT  378
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTCGCAAATATTCCACCATCTCTAGCCTAGGACAGCCTTCCTATCT  397

seq1  CCAGGAGAGTGGGGATGGCCATAGAAGAATCTGCCTACCTCAAGAACCCT  428
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGAGTGGGGATGGCCATAGAAGAATCTGCCTACCTCAAGAACCCT  447

seq1  CCAGTTCCATGACATGGGCTCCCACCCTTCCTGTCTGTCTCTCCGTGGTA  478
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTCCATGACATGGGCTCCCACCCTTCCTGTCTGTCTCTCCGTGGTA  497

seq1  GCTTCATCTGAAATAGGATGGATGGTGGAAGGAAGGAATCTGAATTGCTT  528
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCATCTGAAATAGGATGGATGGTGGAAGGAAGGAATCTGAATTGCTT  547

seq1  CTCAAGATCCCTGATCAATGGTCCCATTCTACTGCTCAGTCTGGAGACCT  578
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGATCCCTGATCAATGGTCCCATTCTACTGCTCAGTCTGGAGACCT  597

seq1  TCTGCTCCTGCTCCATGTTCTCAGCATCCTGGGCTTCATAAGTCTCCCTT  628
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTCCTGCTCCATGTTCTCAGCATCCTGGGCTTCATAAGTCTCCCTT  647

seq1  TTGAGATAAGGGGAAAAAAGACAGGTCCCCATAGTCCCTAGTCTCCTTCT  678
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGATAAGGGGAAAAAAGACAGGTCCCCATAGTCCCTAGTCTCCTTCT  697

seq1  TAGAGCCTGCCTATGGCTGGTTGTTCTCCTGAATCTCAGAGCAATAGCCA  728
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCCTGCCTATGGCTGGTTGTTCTCCTGAATCTCAGAGCAATAGCCA  747

seq1  CATGGCTATGTGTCATTTGGGGGTTGTTTCTGCTGCTCTGGATGCTGAGG  778
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCTATGTGTCATTTGGGGGTTGTTTCTGCTGCTCTGGATGCTGAGG  797

seq1  TATGAAACCTCTGCAATCCAGAGAAAAACAGCAGAGCCTGAATAATCAGT  828
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAACCTCTGCAATCCAGAGAAAAACAGCAGAGCCTGAATAATCAGT  847

seq1  TCTCAGGAAGTGCTGCTGAGTGACTAACAGAATACCGAGGAATGCAAGAT  878
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGGAAGTGCTGCTGAGTGACTAACAGAATACCGAGGAATGCAAGAT  897

seq1  GCTTTCAATGTATTTTCCACATTTGCTGACCATGCTTTTCTACATAGTAA  928
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCAATGTATTTTCCACATTTGCTGACCATGCTTTTCTACATAGTAA  947

seq1  AGGGCAGCAGTGAGGAAGATGGAAAGACCATTTCTCCACAATTTTCTGTT  978
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAGCAGTGAGGAAGATGGAAAGACCATTTCTCCACAATTTTCTGTT  997

seq1  TACCTCTAAGGAGGACCCCTAAATCAGGAAAAACACAGCAGGGCCCAAGC  1028
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCTAAGGAGGACCCCTAAATCAGGAAAAACACAGCAGGGCCCAAGC  1047

seq1  CACCAACTCCTCCTCTGTTTTGCCTTTTATCCCTGGGCTGTACCCTTCCA  1078
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAACTCCTCCTCTGTTTTGCCTTTTATCCCTGGGCTGTACCCTTCCA  1097

seq1  GGTTGCAGGCAGACAGAGGTAGACAGACTAGCTTGGAGACAACTCTAAGT  1128
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCAGGCAGACAGAGGTAGACAGACTAGCTTGGAGACAACTCTAAGT  1147

seq1  GAATTC  1134
      ||||||
seq2  GAATTC  1153