BAC Information

Click to search

BAC

Clone NameB6Ng01-307I20
Chromosome3 (Build37)
Map Location 10,438,274 - 10,439,431
singlet/doubletsinglet
Overlap geneSnx16
Upstream geneZfp704, Pag1, LOC621504, Fabp5, LOC100041480, Pmp2, Fabp9, Fabp4, 1700008G05Rik, Impa1, Slc10a5, Zfand1, Chmp4c
Downstream geneLOC670564, LOC383826, EG667978
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-307I20.bB6Ng01-307I20.g
ACCGA100293GA100294
length9951,154
definitionB6Ng01-307I20.b B6Ng01-307I20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgcactaaacccatctcgacctgggctatttttggttgggagac
ttttctatttccttaaggattatgggactgtttcgatggtttatctgatc
ctgatttaattttggtatctagtatctgtgtagaaaatcatccatttcat
ctatattttccagttttgttgaggataggcttttgtagtaggatccgatg
ttttttttttaatttcctcagtttctgtggttgtctccctcttcatttct
gattttgttaatttggttactgtctctgtgccctctggttagtatggcta
gggggttatctttcttgttgattttctcacagaaccagctcctggtttta
ttgattctttgtatagttctcattgtttgttttttgtttacttcagccct
cagtttgattatttcttactatctactccttttgggtgtatttgcttctt
tttgttctagatcattcattcagatgtgttgttaagctgctagtgtatgc
tccaatttctttattgtggcactcagcactgctttcattgtgtcacataa
gtttgggtatgttttatcttaatttccattaaattctaaaaagtctttta
tttctttctttatttcttccaggaccaaactatcattgagtagatagttg
ttcagcttccgtgtaaatgtggacttcctattgtttttgttgttcttaaa
gaccagccttagtctgtggtggtccagtagaatacataagattaactcaa
tgttcttgtatatgttatgtcttgttttatgttcaattgtatggtcagtt
ttgaagaaagtaccattagatgctgagaagttgaattcttttgttttagg
gtaaaatgttctgtagatgtctgttgcatccatttgtttcataagttcta
ttagtttcagtgtgtctctatttatgttcaattgtatggtcagttttgaa
gaaagtaccattagatgctgagaagtggattctttgtttagggta
gaattcactatctaaaaatgagaaggacatattgaagaattagacttcaa
cctagaactcaaaccaatagaaaagaaagtgcttctcttaatttgtgaca
ctcaattacctatgaagacatgggtaacatcatcctgtaatctgatttac
ctctgtggactcttgtttacatggttaggagaacaaacttattttacatc
tcttttcttgacccttatgatatacatatttcttctttttttttcccttt
ggtctacttttctttattttttgcaatattcattttaaatggacttaatc
ctaacatacattcaaacatatttcctgtctactcccactcaaaaaatgga
agcagaaggagaagttttgtcgtcctggttgtactatatgcaacatagga
acagaagaaggaaaaaagtcattcattttacttttttatagaattactga
aactcccaaggatttacacaggctaatcatagtcagtccgaagtttgatt
attactaaggaatgctcttttactttgattgagatttgcaatgctatgca
tgcattctaaacctcttccttaaaaaatatgttaatttttaggcagggtc
ttacaaggttgttgcctgtgaacttgctaagtaagtagcctaggtaggtt
tgaacttttgatcttgcagcctccataggtgctgggatacacacctgtac
taccaagccagcaacaactgtcttgaaagtaacattttttttttaaactt
agcatcaaatatatttcaaatgcaaacttggtaaagttaacgaaaaaaaa
gggggggggaaggtatcaggtttacagtcaatcaaattaaatcattaaaa
gttttgctttttgattctagattattcattctcaataacctaaaggtcca
aaagatgggttatattgtatgtctgaataattttgtagaataaagaagta
atgacttaccattacgacgttagtaataaactcagaatgttaagtagcga
ccaggagaatgacagtctatttattacacagcaacaggggtctacagcct
cacttatttactgtctctagccaagctgtccctcttggatgtaaggaagg
ttaacaaggtgtctaactcagctgtcagtgcaaccgtcccgttattgtgg
aaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_10438274_10439431
seq2: B6Ng01-307I20.g_64_1217

seq1  GAATTCACTATCTAAAAATGAGAAGGACATATTGAAGAATTAGACTTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATCTAAAAATGAGAAGGACATATTGAAGAATTAGACTTCAA  50

seq1  CCTAGAACTCAAACCAATAGAAAAGAAAGTGCTTCTCTTAATTTGTGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAACTCAAACCAATAGAAAAGAAAGTGCTTCTCTTAATTTGTGACA  100

seq1  CTCAATTACCTATGAAGACATGGGTAACATCATCCTGTAATCTGATTTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATTACCTATGAAGACATGGGTAACATCATCCTGTAATCTGATTTAC  150

seq1  CTCTGTGGACTCTTGTTTACATGGTTAGGAGAACAAACTTATTTTACATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGGACTCTTGTTTACATGGTTAGGAGAACAAACTTATTTTACATC  200

seq1  TCTTTTCTTGACCCTTATGATATACATATTTCTTCTTTTTTTTTCCCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTTGACCCTTATGATATACATATTTCTTCTTTTTTTTTCCCTTT  250

seq1  GGTCTACTTTTCTTTATTTTTTGCAATATTCATTTTAAATGGACTTAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTACTTTTCTTTATTTTTTGCAATATTCATTTTAAATGGACTTAATC  300

seq1  CTAACATACATTCAAACATATTTCCTGTCTACTCCCACTCAAAAAATGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACATACATTCAAACATATTTCCTGTCTACTCCCACTCAAAAAATGGA  350

seq1  AGCAGAAGGAGAAGTTTTGTCGTCCTGGTTGTACTATATGCAACATAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAAGGAGAAGTTTTGTCGTCCTGGTTGTACTATATGCAACATAGGA  400

seq1  ACAGAAGAAGGAAAAAAGTCATTCATTTTACTTTTTTATAGAATTACTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGAAGGAAAAAAGTCATTCATTTTACTTTTTTATAGAATTACTGA  450

seq1  AACTCCCAAGGATTTACACAGGCTAATCATAGTCAGTCCGAAGTTTGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCCAAGGATTTACACAGGCTAATCATAGTCAGTCCGAAGTTTGATT  500

seq1  ATTACTAAGGAATGCTCTTTTACTTTGATTGAGATTTGCAATGCTATGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTAAGGAATGCTCTTTTACTTTGATTGAGATTTGCAATGCTATGCA  550

seq1  TGCATTCTAAACCTCTTCCTTAAAAAATATGTTAATTTTTAGGCAGGGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTCTAAACCTCTTCCTTAAAAAATATGTTAATTTTTAGGCAGGGTC  600

seq1  TTACAAGGTTGTTGCCTGTGAACTTGCTAAGTAAGTAGCCTAGGTAGGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAGGTTGTTGCCTGTGAACTTGCTAAGTAAGTAGCCTAGGTAGGTT  650

seq1  TGAACTTTTGATCTTGCAGCCTCCATAGGTGCTGGGATACACACCTGTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTTTGATCTTGCAGCCTCCATAGGTGCTGGGATACACACCTGTAC  700

seq1  TACCAAGCCAGCAACAACTGTCTTGAAAGTAACA-TTTTTTTTTAAACTT  749
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TACCAAGCCAGCAACAACTGTCTTGAAAGTAACATTTTTTTTTTAAACTT  750

seq1  AGCATCAAATATATTTCAAATGCAAACTTGGTAAAGTTAACGAAAAAAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCAAATATATTTCAAATGCAAACTTGGTAAAGTTAACGAAAAAAAA  800

seq1  GGGGGGGGGAAGGTATCAGGTTTACAGTCAATCAAATTAAATCATTAAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGGGGAAGGTATCAGGTTTACAGTCAATCAAATTAAATCATTAAAA  850

seq1  GTTTTGCTTTTTGATTCTAGATTATTCATTCTCAATAACCT-AAGGTCCA  898
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GTTTTGCTTTTTGATTCTAGATTATTCATTCTCAATAACCTAAAGGTCCA  900

seq1  AAAGAT-GGTTATATTGTATGTCTGAATAATTTTGTAGAATAAAGAAGTA  947
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGGGTTATATTGTATGTCTGAATAATTTTGTAGAATAAAGAAGTA  950

seq1  ATGACTTACCATTACGACGTTAAGTAATAAACTCAGAAATGTTAAGTAGC  997
      ||||||||||||||||||||| |||||||||||||| |||||||||||||
seq2  ATGACTTACCATTACGACGTT-AGTAATAAACTCAG-AATGTTAAGTAGC  998

seq1  GACCAGGAGAAATGACAGGTCTATTTA-TACACAGCAACAGGGGGTCTAC  1046
      ||||||||| ||||||| ||||||||| |||||||||||| |||||||| 
seq2  GACCAGGAG-AATGACA-GTCTATTTATTACACAGCAACA-GGGGTCTA-  1044

seq1  CAGCCCAACTTTATTTACTGTCCTCTTAGCAAGCTGTCCCCTCTGGATGT  1096
      |||||  || ||||||||||| ||||   |||||||||||   |||||||
seq2  CAGCCTCAC-TTATTTACTGT-CTCTAGCCAAGCTGTCCCTCTTGGATGT  1092

seq1  -AGGAAGTTTAAACAGGGTGTCTAACCTCACGCGGCCAGTGCAACCTTCC  1145
       |||||| || |||| ||||||||| |||| || | |||||||||| |||
seq2  AAGGAAGGTT-AACAAGGTGTCTAA-CTCA-GCTGTCAGTGCAACCGTCC  1139

seq1  --TTATTGTGGAACA  1158
        |||||||||||||
seq2  CGTTATTGTGGAACA  1154