BAC Information

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BAC

Clone NameB6Ng01-307K01
Chromosome3 (Build37)
Map Location 77,811,360 - 77,942,912
singlet/doubletdoublet
Overlap geneLOC667526, LOC626479
Upstream geneDnmt3a-ps1, EG626461
Downstream geneLOC100041691, LOC383883, LOC100041748, LOC100041716, LOC100041725, LOC100041766, Rapgef2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-307K01.bB6Ng01-307K01.g
ACCGA100349GA100350
length1,1261,079
definitionB6Ng01-307K01.b B6Ng01-307K01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,811,360 - 77,812,494)(77,941,813 - 77,942,912)
sequence
gaattcagggcttctcatctccctacctttattaaggcatgctgctttcc
cctccccaactctcttgttgcccaacaccacccaacacttgctgtggcca
gaagccatcagacgatgttggaagagcctggcctccctcacttagctccg
gaccacactcacctgtcaccaacctgggaaggaagtgccaggtcctcggc
cctgctgctaccatcagcccttcagctttgcactcgggtctagaggtgaa
catagcagtcacagggtgactcagaccggccagcgctcagggtccttggt
ggatatatgcctagagaaaggccatttaaagattcatcagtgtgcacagt
tctgagttggttccttttcccataattcctttgcttttacacattgaaga
gatttgaataggactcttgattcgccctggccacccatcgggtctgatgt
ggagcctgacagctagaacaccaggccctgaccctgcagactcaagtttt
caatgttgctcctcagaccctctgcaggaacctggaggagctctgtgtca
ccatatttacagatcacttgcagatccgtgggcttggcctcctggctcat
tgctgcgttcccctctctgttcaggatcagtaaatgttgaaatgtgaatg
catacagaaataaaggcaattcgttgtgctgggaaaaaaaaaagagtgta
aatttgaaagactcctctacattttggcccaaagaaagatactgatttta
acatttctactcaaaataaaagtgtagattctagaagtgtgatcttagaa
gaatgatgagttggcattcagtatctcttttttgtagatcacgtaattca
atatgtggaacactctgatattatttccaaactattaaaacaaaatttga
taaatactagaacccaagtctccatttccccagtcatcctgatctctttt
cttgctttttctgtttgtttgacaagaggtttttcatggtcacctccaaa
actaactcgagttcacttattattccagctattattctaaacctcctcga
attgtgcatgtaatcggagcggagccattaaggtggtgggagtaggaaag
agagagcttaacggaaatgtgatgga

gaattccagtgtgtttaagattggtaaacttcatggactactttgtatct
tactcaaagtatatttatttaagtgtagtgaacatatgtttatatataat
aaaaatatgatataaaatctcttatggtaattttgtttataacattattg
cagctatttagataaggataattacatgtaaggtttaaattagattgttt
acataatatactacacttactgaagtattttattttaatttccccaaggg
caataccacataatcttatgcacataagtttttatttgcctctatgtaga
atgtagctaatttgtttttcctttagaaagtagaagtttaaaatcaatca
aatagtatagggaggatgtcttttataaataaaggtataattttaaagtt
aacttgcaatgaactaaagatctattattaatacttccaaaatctatttc
ttccctatttagagatattaatatttatcataaatattcctttttatagg
gattattgaacatatataaaagtgtacttttaagcagtatgtgctgtagc
ctggagcacctatttgatgcatttacttattttcatgttcatatttgcaa
tgaagccagggagatgcttctgcacagctggatctgttgtttaaccaaaa
gaaaactgtgtccaagagtgtagagactagcactgggtccagatgttcaa
ggacaagagtgatgctctcacacctgtgggactgaagagacttgggagct
tgaataaagaaagtaaccgatgaacttttaaaaggtctcacacaaatgcc
catttctcacagtcaatatcttccccagcagcgctgaccttctttgcttg
attttcttcaacctttacctcaccattccctaggaactctcagattgtag
aaacatttggaactatgcacacagtgcatgaagacatctcccaaattgat
ttatatacaaacatcagatgatttacagaggataagaaacataaaacttt
aagagatagggctagagtggctcagtatatgagcccttgctgctctgaga
cgatcaagtgtttctcaacctactatcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_77811360_77812494
seq2: B6Ng01-307K01.b_47_1172

seq1  GAATTCAGGGCTTCTCATCTCCCTACCTTTATTAAGGCATGCTGCTTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGCTTCTCATCTCCCTACCTTTATTAAGGCATGCTGCTTTCC  50

seq1  CCTCCCCAACTCTCTTGTTGCCCAACACCACCCAACACTTGCTGTGGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCAACTCTCTTGTTGCCCAACACCACCCAACACTTGCTGTGGCCA  100

seq1  GAAGCCATCAGACGATGTTGGAAGAGCCTGGCCTCCCTCACTTAGCTCCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCATCAGACGATGTTGGAAGAGCCTGGCCTCCCTCACTTAGCTCCG  150

seq1  GACCACACTCACCTGTCACCAACCTGGGAAGGAAGTGCCAGGTCCTCGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACACTCACCTGTCACCAACCTGGGAAGGAAGTGCCAGGTCCTCGGC  200

seq1  CCTGCTGCTACCATCAGCCCTTCAGCTTTGCACTCGGGTCTAGAGGTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTGCTACCATCAGCCCTTCAGCTTTGCACTCGGGTCTAGAGGTGAA  250

seq1  CATAGCAGTCACAGGGTGACTCAGACCGGCCAGCGCTCAGGGTCCTTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCAGTCACAGGGTGACTCAGACCGGCCAGCGCTCAGGGTCCTTGGT  300

seq1  GGATATATGCCTAGAGAAAGGCCATTTAAAGATTCATCAGTGTGCACAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATATGCCTAGAGAAAGGCCATTTAAAGATTCATCAGTGTGCACAGT  350

seq1  TCTGAGTTGGTTCCTTTTCCCATAATTCCTTTGCTTTTACACATTGAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTTGGTTCCTTTTCCCATAATTCCTTTGCTTTTACACATTGAAGA  400

seq1  GATTTGAATAGGACTCTTGATTCGCCCTGGCCACCCATCGGGTCTGATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGAATAGGACTCTTGATTCGCCCTGGCCACCCATCGGGTCTGATGT  450

seq1  GGAGCCTGACAGCTAGAACACCAGGCCCTGACCCTGCAGACTCAAGTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCTGACAGCTAGAACACCAGGCCCTGACCCTGCAGACTCAAGTTTT  500

seq1  CAATGTTGCTCCTCAGACCCTCTGCAGGAACCTGGAGGAGCTCTGTGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTTGCTCCTCAGACCCTCTGCAGGAACCTGGAGGAGCTCTGTGTCA  550

seq1  CCATATTTACAGATCACTTGCAGATCCGTGGGCTTGGCCTCCTGGCTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATTTACAGATCACTTGCAGATCCGTGGGCTTGGCCTCCTGGCTCAT  600

seq1  TGCTGCGTTCCCCTCTCTGTTCAGGATCAGTAAATGTTGAAATGTGAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCGTTCCCCTCTCTGTTCAGGATCAGTAAATGTTGAAATGTGAATG  650

seq1  CATACAGAAATAAAGGCAATTCGTTGTGCTGGGAAAAAAAAAAGAGTGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAGAAATAAAGGCAATTCGTTGTGCTGGGAAAAAAAAAAGAGTGTA  700

seq1  AATTTGAAAGACTCCTCTACATTTTGGCCCAAAGAAAGATACTGATTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGAAAGACTCCTCTACATTTTGGCCCAAAGAAAGATACTGATTTTA  750

seq1  ACATTTCTACTCAAAATAAAAGTGTAGATTCTAGAAGTGTGATCTTAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCTACTCAAAATAAAAGTGTAGATTCTAGAAGTGTGATCTTAGAA  800

seq1  GAATGATGAGTTGGCATTCAGTATCTCTTTTTTGTAGATCACGTAATTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGATGAGTTGGCATTCAGTATCTCTTTTTTGTAGATCACGTAATTCA  850

seq1  ATATGTGGAACACTCTGATAATTATTTCCAAACTATTAAAACAAAAATTT  900
      ||||||||||||||||||| |||||||||||||||||||||| |||||||
seq2  ATATGTGGAACACTCTGAT-ATTATTTCCAAACTATTAAAAC-AAAATTT  898

seq1  GATAAAATACTAAGAACCCAAGTCTCCATTTCCCCAGTCATCCTGAATCT  950
      ||| ||||||| ||||||||||||||||||||||||||||||||| ||||
seq2  GAT-AAATACT-AGAACCCAAGTCTCCATTTCCCCAGTCATCCTG-ATCT  945

seq1  CTTTTTCTTGCTTTTTTCTGTTTGTTTGACAAAGAGGTTTTTCAATGGTC  1000
      | ||||||||| |||||||||||||||||| |||||||||||| ||||||
seq2  C-TTTTCTTGC-TTTTTCTGTTTGTTTGAC-AAGAGGTTTTTC-ATGGTC  991

seq1  ACTCCAAAAACTAACTCGAAGTTCACTTA-TATCCCAGGCTATTA-TCTA  1048
      ||  | |||||||||||| |||||||||| ||| ||| ||||||| ||||
seq2  ACCTCCAAAACTAACTCG-AGTTCACTTATTATTCCA-GCTATTATTCTA  1039

seq1  AAC--TCTCAAAATGTGCATGGTTATC-GAGCGGAAGCAATTTAAAGTGT  1095
      |||   ||| || ||||||| || ||| |||||||  ||  |||| ||| 
seq2  AACCTCCTCGAATTGTGCAT-GTAATCGGAGCGGAGCCA--TTAAGGTGG  1086

seq1  GGGAAGTAAGAGAAAGAGAGTTTAAACAGAATGTGATGGA  1135
       || |||| || | |||||| ||||    |||||||||||
seq2  TGGGAGTAGGAAAGAGAGAGCTTAACGGAAATGTGATGGA  1126


seq1: chr3_77941813_77942912
seq2: B6Ng01-307K01.g_63_1141 (reverse)

seq1  CTGATAGGTATGTTGAGAAACCAACCTGGATCGTCTCCAAGAGCAGCAAG  50
      |||||| ||| ||||||||||    || |||||||||  |||||||||||
seq2  CTGATA-GTAGGTTGAGAAAC---ACTTGATCGTCTC--AGAGCAGCAAG  44

seq1  GGCTCATAATTACTGAGCCACTTCTAGCCCCTATCTTCTTTAAAGTTTTT  100
      ||||||||  ||||||||||| ||||| ||||||||   |||||| ||||
seq2  GGCTCATA--TACTGAGCCAC-TCTAG-CCCTATCT--CTTAAAG-TTTT  87

seq1  ATGTTTTTCTTTATTCCTCTTGTTAAATTCATCTGATGTTTGTATATAAA  150
      |||  ||||||   ||||| |||  || ||||||||||||||||||||||
seq2  ATG--TTTCTT--ATCCTC-TGT--AAATCATCTGATGTTTGTATATAAA  130

seq1  TCAATTTGGGAGATGTTCTTCATGCACTGTGTGCATAGTTCCAAATGTTT  200
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TCAATTTGGGAGATG-TCTTCATGCACTGTGTGCATAGTTCCAAATGTTT  179

seq1  CTACAATCTGAGAGTTCCTAGGGAATGGTGAGGTAAAGGTTGAAGAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAATCTGAGAGTTCCTAGGGAATGGTGAGGTAAAGGTTGAAGAAAAT  229

seq1  CAAGCAAAGAAGGTCAGCGCTGCTGGGGAAGATATTGACTGTGAGAAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAAAGAAGGTCAGCGCTGCTGGGGAAGATATTGACTGTGAGAAATG  279

seq1  GGCATTTGTGTGAGACCTTTTAAAAGTTCATCGGTTACTTTCTTTATTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTTGTGTGAGACCTTTTAAAAGTTCATCGGTTACTTTCTTTATTCA  329

seq1  AGCTCCCAAGTCTCTTCAGTCCCACAGGTGTGAGAGCATCACTCTTGTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCCAAGTCTCTTCAGTCCCACAGGTGTGAGAGCATCACTCTTGTCC  379

seq1  TTGAACATCTGGACCCAGTGCTAGTCTCTACACTCTTGGACACAGTTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACATCTGGACCCAGTGCTAGTCTCTACACTCTTGGACACAGTTTTC  429

seq1  TTTTGGTTAAACAACAGATCCAGCTGTGCAGAAGCATCTCCCTGGCTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTTAAACAACAGATCCAGCTGTGCAGAAGCATCTCCCTGGCTTCA  479

seq1  TTGCAAATATGAACATGAAAATAAGTAAATGCATCAAATAGGTGCTCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAATATGAACATGAAAATAAGTAAATGCATCAAATAGGTGCTCCAG  529

seq1  GCTACAGCACATACTGCTTAAAAGTACACTTTTATATATGTTCAATAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAGCACATACTGCTTAAAAGTACACTTTTATATATGTTCAATAATC  579

seq1  CCTATAAAAAGGAATATTTATGATAAATATTAATATCTCTAAATAGGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATAAAAAGGAATATTTATGATAAATATTAATATCTCTAAATAGGGAA  629

seq1  GAAATAGATTTTGGAAGTATTAATAATAGATCTTTAGTTCATTGCAAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGATTTTGGAAGTATTAATAATAGATCTTTAGTTCATTGCAAGTT  679

seq1  AACTTTAAAATTATACCTTTATTTATAAAAGACATCCTCCCTATACTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTAAAATTATACCTTTATTTATAAAAGACATCCTCCCTATACTATT  729

seq1  TGATTGATTTTAAACTTCTACTTTCTAAAGGAAAAACAAATTAGCTACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGATTTTAAACTTCTACTTTCTAAAGGAAAAACAAATTAGCTACAT  779

seq1  TCTACATAGAGGCAAATAAAAACTTATGTGCATAAGATTATGTGGTATTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACATAGAGGCAAATAAAAACTTATGTGCATAAGATTATGTGGTATTG  829

seq1  CCCTTGGGGAAATTAAAATAAAATACTTCAGTAAGTGTAGTATATTATGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGGGGAAATTAAAATAAAATACTTCAGTAAGTGTAGTATATTATGT  879

seq1  AAACAATCTAATTTAAACCTTACATGTAATTATCCTTATCTAAATAGCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATCTAATTTAAACCTTACATGTAATTATCCTTATCTAAATAGCTG  929

seq1  CAATAATGTTATAAACAAAATTACCATAAGAGATTTTATATCATATTTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAATGTTATAAACAAAATTACCATAAGAGATTTTATATCATATTTTT  979

seq1  ATTATATATAAACATATGTTCACTACACTTAAATAAATATACTTTGAGTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATATAAACATATGTTCACTACACTTAAATAAATATACTTTGAGTA  1029

seq1  AGATACAAAGTAGTCCATGAAGTTTACCAATCTTAAACACACTGGAATTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACAAAGTAGTCCATGAAGTTTACCAATCTTAAACACACTGGAATTC  1079


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