BAC Information

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BAC

Clone NameB6Ng01-307K15
Chromosome18 (Build37)3 (Build37)
Map Location 52,446,884 - 52,447,98934,081,083 - 34,081,603
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePrr16, EG240289
Downstream geneFtmt, Srfbp1, Lox, Zfp474, 1700034E13Rik, Gykl1, Sncaip, A730036E13Rik, LOC667317, LOC100042430, Snx2, Gm1859, Snx24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-307K15.bB6Ng01-307K15.g
ACCGA100375GA100376
length1,1141,114
definitionB6Ng01-307K15.b B6Ng01-307K15.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(52,446,884 - 52,447,989)(34,081,083 - 34,081,603)
sequence
gaattcataatctaaaatcagatgtttccccataagcctttctattaact
ttaaagctataatcctgtgatcccaaattgacctttcctctttcataagc
ttaaaaatatttagtcagccctgtctttcctgcttgttgtgctttctctg
aatacttagaccaaagtattgatattacaaaagatcaataaggtgaacca
gttagtttattgggattacttacaagagtatggatcaggggatacttaca
gaagtcagaacaactcaaatgcagtaatatcagtgaaaacctactccatc
atgagtcctgaaactggaaccctttagcttattgcatgacttacagccct
ctcaacaggttggaggatatcctcctgataactcagctggtctcctgtct
tcaaaagcctccactctttatataaccttgaagatggaggagtcttgtgc
atctggtcagtttcagggacttcatgtgaccatcaagttgtttaactttc
tgaattttaaacagcatttttttttctagtgagcctcctttcaaacttct
gagtaccaaggtactttagagaaaattgttacttaaaaaaacaaaaaaaa
caaaaaaaacaagtaccagacataaaagaagctgtggcattttgctatta
tttaaagacactaaagagtgggtttaccatgaaacgagaagtaaatagaa
aaataaaaaaattttcctaatgcctaaatcttattgaggcttaaatatct
aaaaatctaaaaattgtcaatggaatttttgataacctaatcatttcttc
acatatagtcttcatagatccatcatcttagacaaaaaaatgcataattc
aattttaatgagagattaatgaagagtagcatacaactaaatgatgatta
gttaaactgaatattttggcctacatttggtacctttggctgttagacta
tctataatgatacgaaaatgatttttcttatgaagcccaatgtgcttact
gcgttctcacgctaacagcagtgctgtttagtgccctcaaggtgcgcatc
actaacctcctccacaagccaccagttgaagaacaagggttgtcaatgca
ccttggaggccaag

gaattcagatgaaattagatgagtaatgtaagtgacaattcacagttgta
ttagtagaacaggttttataaagaattttaaaatacattattcttttttt
atggactatgaatttttttattaggtattttcttcatttacatttccaat
gctatcccaaaagtccccccatacccttccccccctccccactcctactt
cttggccctgcgttctgctttactgaggcatataaagtttgcaagaccaa
tgggcctctctttccaatgatggctgactaggccatcttctgatacatat
gcagctggagacacgagctctgggggagtactggttagttcatattgttg
ttccacctatagggttgcagatcccttcagctccttgggtactttctcta
gctcctccattgggggccctgtgatccatctaatagttgactgtgagcat
ccacttctgtgtttgctaggccctggcatagtctcacaagagacagctac
atctgggtcctttcgataaaatcttgctagtgtatgcaatggtgtcagcg
tttggatgctgattatggggtggatccctagatatggcagtctctacatg
gtccatcctttcatctcagctccaaactttgtctctgtaactccttccat
gggtgttttgttcccaattctaaggaggggcatagtgtccacacttcagt
cttcattcttcttgagtttcatgtgtttagcaaattgtatcttatatctt
gggaatcctaggtttgtggctaatatccacttatcagtgagtacatattg
tgtgagttcctttgtgaatgtgttacctcactcaggatgatgccctccag
gtccatccatttggctaggaatttcataaattcattctttttaatagctg
agtagtactccattgtgtagatgtaccacattttctgtatccattcctct
gttggaggggcatatggttcttccagcttctggctattataaaataacgc
tgctatgacatagtggagcatgtgtcttctaccaggtgggaacatcttct
gggatatatgcccaggagaggtattgtgtggaatccctctgggtagtact
atgtccattttctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_52446884_52447989
seq2: B6Ng01-307K15.b_47_1160

seq1  GAATTCATAATCTAAAATCAGATGTTTCCCCATAAGCCTTTCTATTAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAATCTAAAATCAGATGTTTCCCCATAAGCCTTTCTATTAACT  50

seq1  TTAAAGCTATAATCCTGTGATCCCAAATTGACCTTTCCTCTTTCATAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGCTATAATCCTGTGATCCCAAATTGACCTTTCCTCTTTCATAAGC  100

seq1  TTAAAAATATTTAGTCAGCCCTGTCTTTCCTGCTTGTTGTGCTTTCTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATATTTAGTCAGCCCTGTCTTTCCTGCTTGTTGTGCTTTCTCTG  150

seq1  AATACTTAGACCAAAGTATTGATATTACAAAAGATCAATAAGGTGAACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTTAGACCAAAGTATTGATATTACAAAAGATCAATAAGGTGAACCA  200

seq1  GTTAGTTTATTGGGATTACTTACAAGAGTATGGATCAGGGGATACTTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTTTATTGGGATTACTTACAAGAGTATGGATCAGGGGATACTTACA  250

seq1  GAAGTCAGAACAACTCAAATGCAGTAATATCAGTGAAAACCTACTCCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCAGAACAACTCAAATGCAGTAATATCAGTGAAAACCTACTCCATC  300

seq1  ATGAGTCCTGAAACTGGAACCCTTTAGCTTATTGCATGACTTACAGCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTCCTGAAACTGGAACCCTTTAGCTTATTGCATGACTTACAGCCCT  350

seq1  CTCAACAGGTTGGAGGATATCCTCCTGATAACTCAGCTGGTCTCCTGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACAGGTTGGAGGATATCCTCCTGATAACTCAGCTGGTCTCCTGTCT  400

seq1  TCAAAAGCCTCCACTCTTTATATAACCTTGAAGATGGAGGAGTCTTGTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGCCTCCACTCTTTATATAACCTTGAAGATGGAGGAGTCTTGTGC  450

seq1  ATCTGGTCAGTTTCAGGGACTTCATGTGACCATCAAGTTGTTTAACTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGTCAGTTTCAGGGACTTCATGTGACCATCAAGTTGTTTAACTTTC  500

seq1  TGAATTTTAAACAGCATTTTTTTTTCTAGTGAGCCTCCTTTCAAACTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTTAAACAGCATTTTTTTTTCTAGTGAGCCTCCTTTCAAACTTCT  550

seq1  GAGTACCAAGGTACTTTAGAGAAAATTGTTACTTAAAAAAACAAAAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACCAAGGTACTTTAGAGAAAATTGTTACTTAAAAAAACAAAAAAAA  600

seq1  CAAAAAAAACAAGTACCAGACATAAAAGAAGCTGTGGCATTTTGCTATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAAACAAGTACCAGACATAAAAGAAGCTGTGGCATTTTGCTATTA  650

seq1  TTTAAAGACACTAAAGAGTGGGTTTACCATGAAACGAGAAGTAAATAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGACACTAAAGAGTGGGTTTACCATGAAACGAGAAGTAAATAGAA  700

seq1  AAATAAAAAAATTTTCCTAATGCCTAAATCTTATTGAGGCTTAAATATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAAAAATTTTCCTAATGCCTAAATCTTATTGAGGCTTAAATATCT  750

seq1  AAAAATCTAAAAATTGTCAATGGAATTTTTGATAACCTAATCATTTCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCTAAAAATTGTCAATGGAATTTTTGATAACCTAATCATTTCTTC  800

seq1  ACATATAGTCTTCATAGATCCATCATCTTAGACAAAAAAATGCATAATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATAGTCTTCATAGATCCATCATCTTAGACAAAAAAATGCATAATTC  850

seq1  AATTTTAATGAGAGATTAATGAAGAGTAGCATACAACTAAATGATGATTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAATGAGAGATTAATGAAGAGTAGCATACAACTAAATGATGATTA  900

seq1  GTTAAACTGAATATTTTGGCCTACATTTGGTACCTTTGGCTGTTAGACTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAACTGAATATTTTGGCCTACATTTGGTACCTTTGGCTGTTAGACTA  950

seq1  TCTATAATGATACGAAAATGA-TTTTCTTATGAAGCCCAATGTGCTTACT  999
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TCTATAATGATACGAAAATGATTTTTCTTATGAAGCCCAATGTGCTTACT  1000

seq1  GCGTTCTCACGCT-ACAGCAGGTGCTGTTTAGTG-CCTC-AGGTGCGCAT  1046
      ||||||||||||| |||||| ||||||||||||| |||| ||||||||||
seq2  GCGTTCTCACGCTAACAGCA-GTGCTGTTTAGTGCCCTCAAGGTGCGCAT  1049

seq1  CACTAA-CTCCT-CAC-AGCCACCAG-TGA--GACAGGGGTTGTCAAATT  1090
      |||||| ||||| ||| ||||||||| |||   ||| ||||||||||  |
seq2  CACTAACCTCCTCCACAAGCCACCAGTTGAAGAACAAGGGTTGTCAA--T  1097

seq1  GCA-CTTGAGGGCCAAG  1106
      ||| ||||  |||||||
seq2  GCACCTTGGAGGCCAAG  1114


seq1: chr3_34081083_34081603
seq2: B6Ng01-307K15.g_655_1177 (reverse)

seq1  CAGAAAATTGGACATAGTACTA-CCGGAGG--ATCCA-GCAATACCTCTC  46
      ||||||| |||||||||||||| || ||||   ||||  |||||||||||
seq2  CAGAAAA-TGGACATAGTACTACCCAGAGGGATTCCACACAATACCTCTC  49

seq1  CTGGGCATATAT-CCAGAAGATG-CCCCAACTGGTAAGAAGGACACATGC  94
      |||||||||||| ||||||||||  |||| ||||| |||| |||||||||
seq2  CTGGGCATATATCCCAGAAGATGTTCCCACCTGGT-AGAA-GACACATGC  97

seq1  TCCACTATGTTCATAGCAGCCTTA-TTTATAATAGCCAGAAGCTGGAAAG  143
      ||||||||| |||||||||| ||| ||||||||||||||||||||| |||
seq2  TCCACTATG-TCATAGCAGCGTTATTTTATAATAGCCAGAAGCTGG-AAG  145

seq1  AACCCAGATGCCCCT-CAACAGAGGAATGGATACAGAAAATGTGGTACAT  192
      || ||| |||||||| ||||||||||||||||||||||||||||||||||
seq2  AA-CCATATGCCCCTCCAACAGAGGAATGGATACAGAAAATGTGGTACAT  194

seq1  CTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAAT  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAAT  244

seq1  TCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACA  294

seq1  CATTCACAAAGGAACTCACACAATATGTACTCACCGATAAGTGGATATTA  342
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTA  344

seq1  GCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTCCTAAACACAT  392
      |||  ||||||||||| |||||||||||||||||||||| ||||||||||
seq2  GCCACAAACCTAGGATTCCCAAGATATAAGATACAATTTGCTAAACACAT  394

seq1  GAAACTCAAGAAGAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTCAAGAAGAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTA  444

seq1  GAAGTGGGAACAAAACACCCTTGGAAGGAGTTACAGAGACAAAGTTTGGA  492
      ||| |||||||||||||||| |||||||||||||||||||||||||||||
seq2  GAATTGGGAACAAAACACCCATGGAAGGAGTTACAGAGACAAAGTTTGGA  494

seq1  GCTGAGATGAAAGGATGGACCATGTAGAG  521
      |||||||||||||||||||||||||||||
seq2  GCTGAGATGAAAGGATGGACCATGTAGAG  523


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