BAC Information

Click to search

BAC

Clone NameB6Ng01-307L09
Chromosome3 (Build37)
Map Location 18,011,444 - 18,012,574
singlet/doubletsinglet
Overlap geneCyp7b1
Upstream geneLOC100040059, EG383936, LOC622737, ENSMUSG00000074674, LOC100040120, Cypt12, LOC545508, Bhlhb5
Downstream geneLOC622921, LOC100040153
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-307L09.bB6Ng01-307L09.g
ACCGA100411GA100412
length1,128950
definitionB6Ng01-307L09.b B6Ng01-307L09.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctattatttcttcctcagataattagaactcaccagtaatgcttt
ctagagctgatattttctgcattggaagactataaattattcgttcaatg
tcttggtagctaattcctccttcttagctatttcttctttggatagaact
atgaaatcctccttggggtgtgaccctcagaattttgcttttcctttcct
ccaagctagtttactcttagtcttctttatcagttaattttcctttaatg
gttcctattagttcatggtttctgcagcaggttttgttcctgtcagctgt
aattctgtcagttgatgattcacgttaggtcatcaattttcttgtgacct
gaagcattcttgcctgtgagcttttcctgtgttcttcttgtgaagatgga
tgcactcacttcccacttccttactgcttcacctgaaactggaagtccca
agttcagcttttatgataattgttttcatactttccaataagtgtttgct
aagttgtttaataatcagctaatgactcattaggacagtaaaatagactg
cttataaatacatctgaatttacatgtttttctcaatcaatgatcttatt
tgaaaatttgtgatttgcaaagtgctgaagtgagacttataaattcagag
aattaagaatatgaaagttaatgactgatgagagtaggagaattctttag
ggaagagccccctaaagggcatgtaatgccagaagattctttatgaggta
atgagatgttgttcttctctggctctcagtctgttgaattctaagtctca
ctatgatctgtatttcatatgtgtaatcttgcctgttccaactaccactg
agcactagatactgcttgaattccacctttcaaactaccattgacagagc
cttctatgtgtatcatacatttattgagtgactgggattaaaaggcatgt
ggctctttaagccagtgaacaacttgtcagaatggagactgctcacttct
ttctgcagatatctgctagtcactcactctcttttatagagtccagcttt
agcatttggggagattcctccctgtttggctcatttctttttctccttcc
actatgggccaagtaacccgggctttct

gaattcatttgtttcctctttaagggtttctacatgattacctgtgtttt
cctgtatttttttcactgagttatttatagcctcctctttttttctatgt
tttagtgttctttatttttatttttttttctttcttttttttcaatattt
tttattacgtattttcctcaattacatttccagtgctatcccaaaagtcc
cccataccttctctccaactcccctacccacccattcccacttttttgcc
ctggcgttcccctgtactggggcatataaagtttgcgtgtccaatgggcc
tctctttccagtgatggccgactaggccatcttttgatacatatgcagct
agagacacgagctccggagtactggttagttcataatgttgttccaccta
tagggttgcagatctctttagctccttggatactttctctagctcctcca
ttggggtccctgtgatccatccaatagctgactgtgatcatccacttatg
tgtttgctaggccccagtctagtctcacaagagacagctatatcagggtc
ctttcagccaatgcttgctagtgtatgcaatggtgtcatcgtttggaggc
taattatgtgatggatccctggatatggcagtctctagatggtccatcct
tttgtctcagctccaaactttgtctctgtaactccttccatgggtgattg
tttccaattctaagaagctctattatcttcatgagataggattttaggtc
agcttccagatcttcaggtgtgttggtgtattcagggcttgctgtggaag
gataactgggttctgctgatgcccacaaaaattggcttctgtcacttatc
gtcttgtgcttgcctctcaccatctcattatctccctgatgtttgctggt
ctggctgactctgtctggagtctgactctttttgtctctgggtttacttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_18011444_18012574
seq2: B6Ng01-307L09.b_42_1169 (reverse)

seq1  AGAAAGAAGCCGGG-TACTT-GCCCATTAAGTGGAAAGGAGAAAAAGAAA  48
      ||||||   ||||| ||||| ||||||  ||||| |||||||||||| ||
seq2  AGAAAG--CCCGGGTTACTTGGCCCAT--AGTGG-AAGGAGAAAAAG-AA  44

seq1  AGGAACCAAACAGGGAG--ATCTCCC--AATGCT-AAGCTGGGACTCTAT  93
      | || ||||||||||||  |||||||  |||||| ||||| |||||||||
seq2  ATGAGCCAAACAGGGAGGAATCTCCCCAAATGCTAAAGCT-GGACTCTAT  93

seq1  -AAAGAGAGTGAGTGGACTAGCAGATAATCTGCAGGAAAGAAGTGAGCAG  142
       ||||||||||||| ||||||||||| ||||||| |||||||||||||||
seq2  AAAAGAGAGTGAGT-GACTAGCAGAT-ATCTGCA-GAAAGAAGTGAGCAG  140

seq1  TCTTCCATTCTGACAAGTTGTTCACTGGCTTAAAGAGCCACATGCCTTTT  192
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TC-TCCATTCTGACAAGTTGTTCACTGGCTTAAAGAGCCACATGCCTTTT  189

seq1  AATCCCAGTCACTCAATAAATGTATGATACACATAGAAGGCTCTGTCAAT  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAGTCACTCAATAAATGTATGATACACATAGAAGGCTCTGTCAAT  239

seq1  GGTAGTTTGAAAGGTGGAATTCAAGCAGTATCTAGTGCTCAGTGGTAGTT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTTTGAAAGGTGGAATTCAAGCAGTATCTAGTGCTCAGTGGTAGTT  289

seq1  GGAACAGGCAAGATTACACATATGAAATACAGATCATAGTGAGACTTAGA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAGGCAAGATTACACATATGAAATACAGATCATAGTGAGACTTAGA  339

seq1  ATTCAACAGACTGAGAGCCAGAGAAGAACAACATCTCATTACCTCATAAA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAACAGACTGAGAGCCAGAGAAGAACAACATCTCATTACCTCATAAA  389

seq1  GAATCTTCTGGCATTACATGCCCTTTAGGGGGCTCTTCCCTAAAGAATTC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTTCTGGCATTACATGCCCTTTAGGGGGCTCTTCCCTAAAGAATTC  439

seq1  TCCTACTCTCATCAGTCATTAACTTTCATATTCTTAATTCTCTGAATTTA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACTCTCATCAGTCATTAACTTTCATATTCTTAATTCTCTGAATTTA  489

seq1  TAAGTCTCACTTCAGCACTTTGCAAATCACAAATTTTCAAATAAGATCAT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCTCACTTCAGCACTTTGCAAATCACAAATTTTCAAATAAGATCAT  539

seq1  TGATTGAGAAAAACATGTAAATTCAGATGTATTTATAAGCAGTCTATTTT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGAGAAAAACATGTAAATTCAGATGTATTTATAAGCAGTCTATTTT  589

seq1  ACTGTCCTAATGAGTCATTAGCTGATTATTAAACAACTTAGCAAACACTT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCCTAATGAGTCATTAGCTGATTATTAAACAACTTAGCAAACACTT  639

seq1  ATTGGAAAGTATGAAAACAATTATCATAAAAGCTGAACTTGGGACTTCCA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAAAGTATGAAAACAATTATCATAAAAGCTGAACTTGGGACTTCCA  689

seq1  GTTTCAGGTGAAGCAGTAAGGAAGTGGGAAGTGAGTGCATCCATCTTCAC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAGGTGAAGCAGTAAGGAAGTGGGAAGTGAGTGCATCCATCTTCAC  739

seq1  AAGAAGAACACAGGAAAAGCTCACAGGCAAGAATGCTTCAGGTCACAAGA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAACACAGGAAAAGCTCACAGGCAAGAATGCTTCAGGTCACAAGA  789

seq1  AAATTGATGACCTAACGTGAATCATCAACTGACAGAATTACAGCTGACAG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGATGACCTAACGTGAATCATCAACTGACAGAATTACAGCTGACAG  839

seq1  GAACAAAACCTGCTGCAGAAACCATGAACTAATAGGAACCATTAAAGGAA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAAACCTGCTGCAGAAACCATGAACTAATAGGAACCATTAAAGGAA  889

seq1  AATTAACTGATAAAGAAGACTAAGAGTAAACTAGCTTGGAGGAAAGGAAA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAACTGATAAAGAAGACTAAGAGTAAACTAGCTTGGAGGAAAGGAAA  939

seq1  AGCAAAATTCTGAGGGTCACACCCCAAGGAGGATTTCATAGTTCTATCCA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAATTCTGAGGGTCACACCCCAAGGAGGATTTCATAGTTCTATCCA  989

seq1  AAGAAGAAATAGCTAAGAAGGAGGAATTAGCTACCAAGACATTGAACGAA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAATAGCTAAGAAGGAGGAATTAGCTACCAAGACATTGAACGAA  1039

seq1  TAATTTATAGTCTTCCAATGCAGAAAATATCAGCTCTAGAAAGCATTACT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTATAGTCTTCCAATGCAGAAAATATCAGCTCTAGAAAGCATTACT  1089

seq1  GGTGAGTTCTAATTATCTGAGGAAGAAATAATAGAATTC  1131
      |||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGTTCTAATTATCTGAGGAAGAAATAATAGAATTC  1128


| Home | SequenceCutter | Blast | Download |