BAC Information

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BAC

Clone NameB6Ng01-307M13
Chromosome3 (Build37)
Map Location 95,012,724 - 95,149,965
singlet/doubletdoublet
Overlap geneGabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1
Upstream geneEG245290, EG668385, EG212727, Them4, Them5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c
Downstream geneLOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-307M13.bB6Ng01-307M13.g
ACCGA100463GA100464
length1,0511,149
definitionB6Ng01-307M13.b B6Ng01-307M13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,148,934 - 95,149,965)(95,012,724 - 95,013,872)
sequence
gaattcactatgttgacaggttggtgtgaaacaaaaatcctcctgcctct
acctcctgagtgctgagattaaaggtgtgtgcctccacgcctggaagaca
gaatagttttcagaaaagagtttggtttttttgggtttttttttttggtt
tttttttttttttttggttttttttcgagacagggtttctctgtatagcc
ctggctgtcctagaactcactctgtagaccaggctggctttgaactcaga
aatccacctgcctccacctcccaagtgctgggattaaaggcgtgcgccac
cacgcccggcccgaggttttttagtataagggaaaaataaagggagactg
gactgatctgtgtttcagagaatgaaaagaataataatgtacccagtgat
aaaacattccgtataacctccatgtctgtttccttttcctgcagattttt
aattttttttgatgatggctatgcttcctatgtcactcagtcagagcttt
atcccatttgccgaccacgtaagtgtccctacacaattcctcatctctaa
tttcttactctgttttgtatgtcttcttaaggtggtaaattaaaaggctt
gacttctgttttggtgttccagtttgtttggagacatagcattgttccct
aactttgtagcctgaatgaaccctaaaagattctgactgtctttatcaac
ttacagatttgctttgatttcatttctaaggaatttaggtttaaagaagg
ctgctctcatgttttacatttctgtttgtattgtctacataataacttcc
tatagaagctgtgttgtgtgtgttatgtctgtgtgtcttgtgagtatatt
acattatatacacatacatgcaggcccatcttcctccggtgctgtctacc
ttctttggttttcttattaaaaattttaatttacttaatttgtatgaata
ttctgcattacaaatatggtctggtgaattggaatttccctgggactggg
agttgccatatgttaagggtgcctaaggatttccaattggcactggcatt
t
gaattcaagaatagcttaggtaattcagtaagacttacctcaagctaaag
agtagggaaaaaacagctcagtggtagaacactttttatatgtgcaaggc
tctaggttcaagtcccagtacagccaagaacaaaactgtaagacagaaaa
ttggacatagtacaaaaattcttttgataaagtttcagagttctcttttt
aactaattttattggttttaaaacatttgtattgatgactattttcacct
gagtctatttctgtatggccttgtggcaaaggcctgtgatctcagtagtc
ctggtttctaggatgagatatgaagattccaagtgggagaatatgcaata
tcctctctaggtcaaaacagggcatcagatcccctggcactgaacttaca
gatggttgtgagctgccatgtgggtcctcaagatgaacacccaactgctg
agccatctctccaagcccttgcaactatcccccccccccagctcccctgc
agtgcagaggacaaaacccagggtattactgaactaaattatcaatctta
aactgacttttaagaagtgactacatatcttgtgagcaatgtaatacaat
agcagagtgcctgtctagcatgcatgaggctgtatggaccacaaaaaaaa
ttaccacttgccaagctttggtatagcatcaaagaatacctaccatcatc
tagaaaagctattaaaaaactaggtgtggccagacctgctgtctcatgcc
tataattcctgtgtaactatcctcacagaaattcttaaaaaattgtgggt
ccctcctctctactatcagactattaggacaacgaactgcaagaaattct
cagtgccaggcagagaaagttgtcacctcagaaagagatctcagctctga
ccaccttgtaggagactgggagccaatgatagtagttaggggccacagct
gggcccagagttgattagttagttaatacgtacatacttttctatcgacc
taaaactcatgttacatcagaaccccccacacagaactggggggtgtccc
ggctctgtttacagtggcaccactgaatcaaatccttcctgctgtcgtat
actgtaacatcctactgacaatcaatgatgatgcaagcctagcgttgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_95148934_95149965
seq2: B6Ng01-307M13.b_43_1093 (reverse)

seq1  AAATGGCAGTGCCAATT-GAAATCCT--AGCACC-----TACATGGCAAC  42
      ||||| ||||||||||| ||||||||   |||||      | ||||||||
seq2  AAATGCCAGTGCCAATTGGAAATCCTTAGGCACCCTTAACATATGGCAAC  50

seq1  T-CCAGTCCCA-GGAAATTCAAATGCA-CAGA-CATATTTGT-ATGCAGA  87
      | ||||||||| |||||||| ||| || |||| ||||||||| |||||||
seq2  TCCCAGTCCCAGGGAAATTCCAATTCACCAGACCATATTTGTAATGCAGA  100

seq1  ATATTCATACAAATTAAGTAAATTAAAA-TATTAATAAGAAAACCAAAGA  136
      |||||||||||||||||||||||||||| | |||||||||||||||||||
seq2  ATATTCATACAAATTAAGTAAATTAAAATTTTTAATAAGAAAACCAAAGA  150

seq1  AGGTAGACAGCACCGGAGGAAGATGGGCCTGCATGTATGTGTATAT-ATG  185
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AGGTAGACAGCACCGGAGGAAGATGGGCCTGCATGTATGTGTATATAATG  200

seq1  T-ATATACTCAC-AGACACACAGACAT-ACACACAC-ACACAGCTTCTAT  231
      | |||||||||| |||||||||||||| |||||||| |||||||||||||
seq2  TAATATACTCACAAGACACACAGACATAACACACACAACACAGCTTCTAT  250

seq1  AGGAAGTTATTATGTAGACAATACAAACAGAAATGTAAAACATGAGAGCA  281
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGTTATTATGTAGACAATACAAACAGAAATGTAAAACATGAGAGCA  300

seq1  GCCTTCTTTAAACCTAAATTCCTTAGAAATGAAATCAAAGCAAATCTGTA  331
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCTTTAAACCTAAATTCCTTAGAAATGAAATCAAAGCAAATCTGTA  350

seq1  AGTTGATAAAGACAGTCAGAATCTTTTAGGGTTCATTCAGGCTACAAAGT  381
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGATAAAGACAGTCAGAATCTTTTAGGGTTCATTCAGGCTACAAAGT  400

seq1  TAGGGAACAATGCTATGTCTCCAAACAAACTGGAACACCAAAACAGAAGT  431
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAACAATGCTATGTCTCCAAACAAACTGGAACACCAAAACAGAAGT  450

seq1  CAAGCCTTTTAATTTACCACCTTAAGAAGACATACAAAACAGAGTAAGAA  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCTTTTAATTTACCACCTTAAGAAGACATACAAAACAGAGTAAGAA  500

seq1  ATTAGAGATGAGGAATTGTGTAGGGACACTTACGTGGTCGGCAAATGGGA  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAGATGAGGAATTGTGTAGGGACACTTACGTGGTCGGCAAATGGGA  550

seq1  TAAAGCTCTGACTGAGTGACATAGGAAGCATAGCCATCATCAAAAAAAAT  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCTCTGACTGAGTGACATAGGAAGCATAGCCATCATCAAAAAAAAT  600

seq1  TAAAAATCTGCAGGAAAAGGAAACAGACATGGAGGTTATACGGAATGTTT  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATCTGCAGGAAAAGGAAACAGACATGGAGGTTATACGGAATGTTT  650

seq1  TATCACTGGGTACATTATTATTCTTTTCATTCTCTGAAACACAGATCAGT  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACTGGGTACATTATTATTCTTTTCATTCTCTGAAACACAGATCAGT  700

seq1  CCAGTCTCCCTTTATTTTTCCCTTATACTAAAAAACCTCGGGCCGGGCGT  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCTCCCTTTATTTTTCCCTTATACTAAAAAACCTCGGGCCGGGCGT  750

seq1  GGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGTGGAGGCAGGTGGAT  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGTGGAGGCAGGTGGAT  800

seq1  TTCTGAGTTCAAAGCCAGCCTGGTCTACAGAGTGAGTTCTAGGACAGCCA  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGTTCAAAGCCAGCCTGGTCTACAGAGTGAGTTCTAGGACAGCCA  850

seq1  GGGCTATACAGAGAAACCCTGTCTCGAAAAAAACCCAAAAAAAAAAAAAA  881
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GGGCTATACAGAGAAACCCTGTCTCGAAAAAAAACCAAAAAAAAAAAAAA  900

seq1  AAACCAAAAAAAAAAACCCAAAAAAACCAAACTCTTTTCTGAAAACTATT  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAAAAAAAAAACCCAAAAAAACCAAACTCTTTTCTGAAAACTATT  950

seq1  CTGTCTTCCAGGCGTGGAGGCACACACCTTTAATCTCAGCACTCAGGAGG  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTCCAGGCGTGGAGGCACACACCTTTAATCTCAGCACTCAGGAGG  1000

seq1  TAGAGGCAGGAGGATTTTTGTTTCACACCAACCTGTCAACATAGTGAATT  1031
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGCAGGAGGATTTTTGTTTCACACCAACCTGTCAACATAGTGAATT  1050

seq1  C  1032
      |
seq2  C  1051

seq1: chr3_95012724_95013872
seq2: B6Ng01-307M13.g_66_1214

seq1  GAATTCAAGAATAGCTTAGGTAATTCAGTAAGACTTACCTCAAGCTAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAATAGCTTAGGTAATTCAGTAAGACTTACCTCAAGCTAAAG  50

seq1  AGTAGGGAAAAAACAGCTCAGTGGTAGAACACTTTTTATATGTGCAAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGGAAAAAACAGCTCAGTGGTAGAACACTTTTTATATGTGCAAGGC  100

seq1  TCTAGGTTCAAGTCCCAGTACAGCCAAGAACAAAACTGTAAGACAGAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGTTCAAGTCCCAGTACAGCCAAGAACAAAACTGTAAGACAGAAAA  150

seq1  TTGGACATAGTACAAAAATTCTTTTGATAAAGTTTCAGAGTTCTCTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACATAGTACAAAAATTCTTTTGATAAAGTTTCAGAGTTCTCTTTTT  200

seq1  AACTAATTTTATTGGTTTTAAAACATTTGTATTGATGACTATTTTCACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAATTTTATTGGTTTTAAAACATTTGTATTGATGACTATTTTCACCT  250

seq1  GAGTCTATTTCTGTATGGCCTTGTGGCAAAGGCCTGTGATCTCAGTAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTATTTCTGTATGGCCTTGTGGCAAAGGCCTGTGATCTCAGTAGTC  300

seq1  CTGGTTTCTAGGATGAGATATGAAGATTCCAAGTGGGAGAATATGCAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTCTAGGATGAGATATGAAGATTCCAAGTGGGAGAATATGCAATA  350

seq1  TCCTCTCTAGGTCAAAACAGGGCATCAGATCCCCTGGCACTGAACTTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCTAGGTCAAAACAGGGCATCAGATCCCCTGGCACTGAACTTACA  400

seq1  GATGGTTGTGAGCTGCCATGTGGGTCCTCAAGATGAACACCCAACTGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTTGTGAGCTGCCATGTGGGTCCTCAAGATGAACACCCAACTGCTG  450

seq1  AGCCATCTCTCCAAGCCCTTGCAACTATCCCCCCCCCCCAGCTCCCCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATCTCTCCAAGCCCTTGCAACTATCCCCCCCCCCCAGCTCCCCTGC  500

seq1  AGTGCAGAGGACAAAACCCAGGGTATTACTGAACTAAATTATCAATCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAGAGGACAAAACCCAGGGTATTACTGAACTAAATTATCAATCTTA  550

seq1  AACTGACTTTTAAGAAGTGACTACATATCTTGTGAGCAATGTAATACAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGACTTTTAAGAAGTGACTACATATCTTGTGAGCAATGTAATACAAT  600

seq1  AGCAGAGTGCCTGTCTAGCATGCATGAGGCTGTATGGACCACAAAAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGTGCCTGTCTAGCATGCATGAGGCTGTATGGACCACAAAAAAAA  650

seq1  TTACCACTTGCCAAGCTTTGGTATAGCATCAAAGAATACCTACCATCATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCACTTGCCAAGCTTTGGTATAGCATCAAAGAATACCTACCATCATC  700

seq1  TAGAAAAGCTATTAAAAAACTAGGTGTGGCCAGACCTGCTGTCTCATGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAGCTATTAAAAAACTAGGTGTGGCCAGACCTGCTGTCTCATGCC  750

seq1  TATAATTCCTGTGTAACTATCCTCACAGAAATTCTTAAAAAATTGTGGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTCCTGTGTAACTATCCTCACAGAAATTCTTAAAAAATTGTGGGT  800

seq1  CCCTCCTCTCTACTATCAGACTATTAGGACAACGAACTGCAAGAAATTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTCTCTACTATCAGACTATTAGGACAACGAACTGCAAGAAATTCT  850

seq1  CAGGTGCCAGGCAGAGAAAGTTGTCACCTCAGAAAGAGATCTCAGCTCTG  900
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CA-GTGCCAGGCAGAGAAAGTTGTCACCTCAGAAAGAGATCTCAGCTCTG  899

seq1  ACCACCTTGTAGGAGACT-GGAGCCAATGATAGTAGTTA-GGGCCACAGC  948
      |||||||||||||||||| |||||||||||||||||||| ||||||||||
seq2  ACCACCTTGTAGGAGACTGGGAGCCAATGATAGTAGTTAGGGGCCACAGC  949

seq1  T-GGCCCAGGAGTGATTAGTTAGTT-ATACGTACATAC-TTTCTATCGAC  995
      | |||||||   ||||||||||||| |||||||||||| |||||||||||
seq2  TGGGCCCAGAGTTGATTAGTTAGTTAATACGTACATACTTTTCTATCGAC  999

seq1  CTAAAACTCATGTTACATCAGAA-CCCCCACACAG-ACT-GGGGGTGTCC  1042
      ||||||||||||||||||||||| ||||||||||| ||| ||||||||||
seq2  CTAAAACTCATGTTACATCAGAACCCCCCACACAGAACTGGGGGGTGTCC  1049

seq1  CGGGCTCTGTTTCCAGTGGCCACACTGAATCAATCCTTTTCTGCTTGTCG  1092
      | |||||||||| |||||||  |||||||||||  | || |||| |||||
seq2  C-GGCTCTGTTTACAGTGGCACCACTGAATCAAATCCTTCCTGC-TGTCG  1097

seq1  TTATTACTGT-ACAT-CTACTTGACATATCCAATGATGGATGGCCAAGCC  1140
      |   |||||| |||| |||| ||||| || ||||||| ||||  ||||||
seq2  T--ATACTGTAACATCCTAC-TGACA-AT-CAATGAT-GATG--CAAGCC  1139

seq1  TAGC-TTGTT  1149
      |||| |||||
seq2  TAGCGTTGTT  1149