BAC Information

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BAC

Clone NameB6Ng01-308G05
Chromosome3 (Build37)
Map Location 158,761,135 - 158,762,398
singlet/doubletsinglet
Overlap genenone
Upstream geneLrrc7, LOC100041008, LOC668905
Downstream geneLOC668907, Depdc1a, Rpe65, Gpr177
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-308G05.bB6Ng01-308G05.g
ACCGA100903GA100904
length1,1551,170
definitionB6Ng01-308G05.b B6Ng01-308G05.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaaacataagataccaaacttagttctaatggagataaaagaga
catttttaaatagaggccatagtaaatgcttttcatagaactcaaagtta
attcatagggtatgtatggtttgtaacacctacgaagatggattattcct
atcactgactttgttcaagtttcagcacagcattgtaaaggaaaagtgaa
gcaacttctaggggtatgttattaaaggatctggttacaagatatggatt
cttattaaagacagccctgaatcttggcccagcatagagtctcaagtacc
cctacattataatataagatcctccatcctccacagtcctcaagcccctg
aatcctgcaaggcatctggaggagtctaaacatggtaagatcgaagagaa
taaataactcagaaaagttgaaaggtaatatgttttctttatgcaaggtt
ccccatatctatattctttttatatatattcactgaactccctatttttc
catcaactttcagtggtagtaacaacatctcattgtgtcattgtgtatat
gcagccttctacttacttctaacagtgtacttataaactatataggcaaa
tatataacctactaaatgatcaagttctagacataagcaatatgtctagg
ctcacagactgtgagacaattatgtagactagtttcactctgaatctgtc
catttatctttgagatgaatgtttttagcacctatgctatgtaactcctc
tttcttttgagttgttagtgtgttttcattttctgtataattccacaatg
gaatagatatgtttgaaaataaatggtgtcatccacaagtataactttgt
ctgttgtaattagagctactaagagctaccagatggatgatggctctgaa
aatacagcaagaacttcaaaatatctatgtctgtcatttttctatcatct
atctatctatctatctatctatctatctatctatctatatctatcatcat
ttatctatctatctatctatctatctatcatctcatcatcatcatcatca
tcatcatatatcttttaacctatctttctatcattcattatctatcaatc
aatcatggtgtcttattaaacatctatttatctatcaaataatcaattac
ctatc

gaattctcacctgaggaataccgaatggcagagaaacacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatggggagaaagaggaacactcctccattgttggtg
ggaatgcaggcttgtacaacgactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtactcactgataagtggatattagctccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcatagggctccca
atgggaggagctagagaaagtagcccaaggagctaagggatctgcacccc
taatggtggaacacattatgaactaaccagtacccgagctctgactctag
ctgcatatatatcaaagatgcctagttggccatccactgaagagatggcc
atggacttgccaccttatctgccagatacatggaacacctggtcaaaaaa
gggggagatggaatggggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_158761135_158762398
seq2: B6Ng01-308G05.b_47_1201

seq1  GAATTCCAAACATAAGATACCAAACTTAGTTCTAATGGAGATAAAAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAACATAAGATACCAAACTTAGTTCTAATGGAGATAAAAGAGA  50

seq1  CATTTTTAAATAGAGGCCATAGTAAATGCTTTTCATAGAACTCAAAGTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTAAATAGAGGCCATAGTAAATGCTTTTCATAGAACTCAAAGTTA  100

seq1  ATTCATAGGGTATGTATGGTTTGTAACACCTACGAAGATGGATTATTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATAGGGTATGTATGGTTTGTAACACCTACGAAGATGGATTATTCCT  150

seq1  ATCACTGACTTTGTTCAAGTTTCAGCACAGCATTGTAAAGGAAAAGTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTGACTTTGTTCAAGTTTCAGCACAGCATTGTAAAGGAAAAGTGAA  200

seq1  GCAACTTCTAGGGGTATGTTATTAAAGGATCTGGTTACAAGATATGGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTTCTAGGGGTATGTTATTAAAGGATCTGGTTACAAGATATGGATT  250

seq1  CTTATTAAAGACAGCCCTGAATCTTGGCCCAGCATAGAGTCTCAAGTACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTAAAGACAGCCCTGAATCTTGGCCCAGCATAGAGTCTCAAGTACC  300

seq1  CCTACATTATAATATAAGATCCTCCATCCTCCACAGTCCTCAAGCCCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACATTATAATATAAGATCCTCCATCCTCCACAGTCCTCAAGCCCCTG  350

seq1  AATCCTGCAAGGCATCTGGAGGAGTCTAAACATGGTAAGATCGAAGAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTGCAAGGCATCTGGAGGAGTCTAAACATGGTAAGATCGAAGAGAA  400

seq1  TAAATAACTCAGAAAAGTTGAAAGGTAATATGTTTTCTTTATGCAAGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAACTCAGAAAAGTTGAAAGGTAATATGTTTTCTTTATGCAAGGTT  450

seq1  CCCCATATCTATATTCTTTTTATATATATTCACTGAACTCCCTATTTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATATCTATATTCTTTTTATATATATTCACTGAACTCCCTATTTTTC  500

seq1  CATCAACTTTCAGTGGTAGTAACAACATCTCATTGTGTCATTGTGTATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAACTTTCAGTGGTAGTAACAACATCTCATTGTGTCATTGTGTATAT  550

seq1  GCAGCCTTCTACTTACTTCTAACAGTGTACTTATAAACTATATAGGCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCTTCTACTTACTTCTAACAGTGTACTTATAAACTATATAGGCAAA  600

seq1  TATATAACCTACTAAATGATCAAGTTCTAGACATAAGCAATATGTCTAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAACCTACTAAATGATCAAGTTCTAGACATAAGCAATATGTCTAGG  650

seq1  CTCACAGACTGTGAGACAATTATGTAGACTAGTTTCACTCTGAATCTGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGACTGTGAGACAATTATGTAGACTAGTTTCACTCTGAATCTGTC  700

seq1  CATTTATCTTTGAGATGAATGTTTTTAGCACCTATGCTATGTAACTCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATCTTTGAGATGAATGTTTTTAGCACCTATGCTATGTAACTCCTC  750

seq1  TTTCTTTTGAGTTGTTAGTGTGTTTTCATTTTCTGTATAATTCCACAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTGAGTTGTTAGTGTGTTTTCATTTTCTGTATAATTCCACAATG  800

seq1  GAATAGATATGTTTGAAAATAAATGGTGTCATCCACAAGTATAACTTTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGATATGTTTGAAAATAAATGGTGTCATCCACAAGTATAACTTTGT  850

seq1  CTGTTGTAATTAGAGCTACTAAGAGCTACCAGATGGATGATGGCTCTGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGTAATTAGAGCTACTAAGAGCTACCAGATGGATGATGGCTCTGAA  900

seq1  AATACAGCAAGAACTTCAAAATATCTATGTCTGTCATTTTTCTATCATCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAGCAAGAACTTCAAAATATCTATGTCTGTCATTTTTCTATCATCT  950

seq1  ATCTATCTATCTATCTATCTATCTATCTATCTATCTATATCTATCAATCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATCTATCTATCTATCTATCTATCTATCTATCTATCTATATCTATC-ATCA  999

seq1  TTTATCTATCTATCTATCTATCTATCTATCATCTTCATCATCATCATCAT  1050
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTTATCTATCTATCTATCTATCTATCTATCATC-TCATCATCATCATCAT  1048

seq1  CATCATCATATATCTTTT-ACCTATC-TTCTATCATTTCTATTATCTATC  1098
      |||||||||||||||||| ||||||| ||||||||||   ||||||||||
seq2  CATCATCATATATCTTTTAACCTATCTTTCTATCATT--CATTATCTATC  1096

seq1  -ATCTATCAT-GTGTC-TATATAACATCTATTTATCTATCATATATCTAT  1145
       ||| ||||| ||||| |||  ||||||||||||||||||| |||   | 
seq2  AATCAATCATGGTGTCTTATTAAACATCTATTTATCTATCAAATAATCAA  1146

seq1  TTATCTATCATTATCTGTTTCTCTGTCAGTCTATCATCTGTCTAATCACC  1195
      ||| |||||                                         
seq2  TTACCTATC-----------------------------------------  1155

seq1  TACATACATACATACCTATTACATATCATCTCCTATCATATCCCTATTCA  1245
                                                        
seq2  --------------------------------------------------  1155

seq1  TCTCCATCAATTACCTATC  1264
                         
seq2  -------------------  1155


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