BAC Information

Click to search

BAC

Clone NameB6Ng01-308H15
Chromosome3 (Build37)
Map Location 37,029,229 - 37,208,052
singlet/doubletdoublet
Overlap geneIl21, Cetn4
Upstream geneD3Ertd254e, Gpr103, Anxa5, 1810062G17Rik, LOC665709, Exosc9, Ccna2, Bbs7, Trpc3, 4932438A13Rik, Tenr, LOC652987, Il2
Downstream geneBbs12, LOC100041328, Fgf2, LOC100040649, Nudt6, Spata5, LOC665778, Spry1, EG381438, LOC100038875, LOC100041338, EG626367, 4930556A17Rik, LOC665811, EG665821, LOC100041366, LOC100040785
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-308H15.bB6Ng01-308H15.g
ACCGA100969GA100970
length3111,190
definitionB6Ng01-308H15.b B6Ng01-308H15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,029,229 - 37,029,539)(37,206,888 - 37,208,052)
sequence
ttcaaaatcttgtgaaaataaagctattagctaaagtttgtgcaactcat
ctgcacctaatacttcctgtcaaaagcacccttttcctgttctagcttct
ttaacagcttgttctttttattttttacagtggtttgtatagactaatga
gagactccttagtactgtcattctaaataatatgttcttatggaaatcta
gcccatttacctaacatttcattgttgggaattggttctaatgctttgcc
ttatttcagctcccaatagccttgtttccagacctgggcagaggggtggg
gtggggtgggg
gaattcttgaagatgatgaagaagaccagcctttattagctgcttggtgc
cttccaagaggtttggacctcctgttaacagctttcctgttaagcagttc
aatgatgtaatacctgagtgtatccatttccacgtttagtttaggttagt
cccttggtgtctaatctgtgccagaagttatatgtccctaccaatgtcat
taaatctgtagtagtaagaaacaaacagacaaacaaaagcatgatttatt
tgaactgtgagccccaaaacagtatttccatatggtattttaaagtcata
gattccaaagacatttgacttttatttttcagttgaataaacttggcccc
cagatccagatgaaattgtttttaaaaacaatctgaaaatggtatttttc
cattatttccttttatatgacttaaaaaacacctgataaacatgttcttt
ttaaaaatctgttccttcaatatgtaaagtattaataaaactagctgaca
tacagtgtttttaagtatcttctggtagttactgctgggctttcactccc
tgggtcaggcaacacagtagtaagttctttaagaggtaaggccattaagg
gtcctcctttcttaatgaggttaagagtctttttaaaagagtcttcaagg
cctatgtgatgactcagatcaaagcatttgtcactgtgtctgacagcctg
actttggtcctacatggtggaaggtgagaactggttctcacaacttgtcc
tctgatctccacatgcatgctatagtgtgtgagccccccccccctcacac
acacatataatttaaatgtattattacatgtatgggtgttttgcttgcat
ctgtgtctctgggccacttgagtgcctggagaccacagaggccagagggc
tttggaattcatagaaaggtttgtgagcttctatgtagtgctgggaatcg
accccctggaagggccaaaaatgggcttgtactctttgcattcttgttca
tgggcgctcacagtaagccctttcacagatgaaatgcttttatcatagac
tttccatgacacaagaacaagccttgtttattatttgtgcttatggagaa
caaacctgaaggaacacatacaggaggttaaggattcctttaggaaccta
ttctaattacacttagggtggagctcctctctctaaatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_37029229_37029539
seq2: B6Ng01-308H15.b_51_361

seq1  TTCAAAATCTTGTGAAAATAAAGCTATTAGCTAAAGTTTGTGCAACTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAATCTTGTGAAAATAAAGCTATTAGCTAAAGTTTGTGCAACTCAT  50

seq1  CTGCACCTAATACTTCCTGTCAAAAGCACCCTTTTCCTGTTCTAGCTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACCTAATACTTCCTGTCAAAAGCACCCTTTTCCTGTTCTAGCTTCT  100

seq1  TTAACAGCTTGTTCTTTTTATTTTTTACAGTGGTTTGTATAGACTAATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGCTTGTTCTTTTTATTTTTTACAGTGGTTTGTATAGACTAATGA  150

seq1  GAGACTCCTTAGTACTGTCATTCTAAATAATATGTTCTTATGGAAATCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTCCTTAGTACTGTCATTCTAAATAATATGTTCTTATGGAAATCTA  200

seq1  GCCCATTTACCTAACATTTCATTGTTGGGAATTGGTTCTAATGCTTTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATTTACCTAACATTTCATTGTTGGGAATTGGTTCTAATGCTTTGCC  250

seq1  TTATTTCAGCTCCCAATAGCCTTGTTTCCAGACCTGGGCAGAGGGGTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCAGCTCCCAATAGCCTTGTTTCCAGACCTGGGCAGAGGGGTGGG  300

seq1  GTGGGGTGGGG  311
      |||||||||||
seq2  GTGGGGTGGGG  311

seq1: chr3_37206888_37208052
seq2: B6Ng01-308H15.g_67_1256 (reverse)

seq1  AGATTTAGAGA---GAGCTC--ACCTAGGTGGTATTTAGAATAGTTTCCT  45
      |||||||||||   ||||||   |||| || ||| ||||||||| |||||
seq2  AGATTTAGAGAGAGGAGCTCCACCCTAAGT-GTAATTAGAATAGGTTCCT  49

seq1  -AAGTGATCC-TAACCTCCTGGTATGTG-TCCTTCAGTTTTGTTCT-CAT  91
       |||  |||| ||||||||| ||||||| |||||||| |||||||| |||
seq2  AAAGGAATCCTTAACCTCCT-GTATGTGTTCCTTCAGGTTTGTTCTCCAT  98

seq1  -AGCACAATATAACAA-----GCT--GTCTTGTGTCATGG-AAGTCTATG  132
       ||||||| |||| ||     |||   ||||||||||||| |||||||||
seq2  AAGCACAA-ATAATAAACAAGGCTTGTTCTTGTGTCATGGAAAGTCTATG  147

seq1  ATAAAAGCA-TTCATCTGTG-AAGGCCTTACTGTGAGCGCCCATGA--CA  178
      ||||||||| |||||||||| |||| ||||||||||||||||||||   |
seq2  ATAAAAGCATTTCATCTGTGAAAGGGCTTACTGTGAGCGCCCATGAACAA  197

seq1  GAATGC-AAGAGTACAAG-CCATTTTT-GCCCTTCCA-GGGGTCGATTCC  224
      |||||| ||||||||||| |||||||| ||||||||| ||||||||||||
seq2  GAATGCAAAGAGTACAAGCCCATTTTTGGCCCTTCCAGGGGGTCGATTCC  247

seq1  CAGCACCTACATAGAAGCTCACAAACC-TTCTATG-ATTCCAAAGCCCTC  272
      ||||| ||||||||||||||||||||| ||||||| ||||||||||||||
seq2  CAGCA-CTACATAGAAGCTCACAAACCTTTCTATGAATTCCAAAGCCCTC  296

seq1  TGGCCTCTGTGGTCTCCAGGCACTCAAGTGGCCCAGAGACACAGATGCAA  322
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTCTGTGGTCTCCAGGCACTCAAGTGGCCCAGAGACACAGATGCAA  346

seq1  GCAAAACACCCATACATGTAATAATACATTTAAATTATATGTGTGTGTGA  372
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAACACCCATACATGTAATAATACATTTAAATTATATGTGTGTGTGA  396

seq1  -GGGGGGGGGGCTCACACACTATAGCATGCATGTGGAGATCAGAGGACAA  421
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGGGGGGCTCACACACTATAGCATGCATGTGGAGATCAGAGGACAA  446

seq1  GTTGTGAGAACCAGTTCTCACCTTCCACCATGTAGGACCAAAGTCAGGCT  471
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGAGAACCAGTTCTCACCTTCCACCATGTAGGACCAAAGTCAGGCT  496

seq1  GTCAGACACAGTGACAAATGCTTTGATCTGAGTCATCACATAGGCCTTGA  521
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGACACAGTGACAAATGCTTTGATCTGAGTCATCACATAGGCCTTGA  546

seq1  AGACTCTTTTAAAAAGACTCTTAACCTCATTAAGAAAGGAGGACCCTTAA  571
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCTTTTAAAAAGACTCTTAACCTCATTAAGAAAGGAGGACCCTTAA  596

seq1  TGGCCTTACCTCTTAAAGAACTTACTACTGTGTTGCCTGACCCAGGGAGT  621
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTACCTCTTAAAGAACTTACTACTGTGTTGCCTGACCCAGGGAGT  646

seq1  GAAAGCCCAGCAGTAACTACCAGAAGATACTTAAAAACACTGTATGTCAG  671
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCCCAGCAGTAACTACCAGAAGATACTTAAAAACACTGTATGTCAG  696

seq1  CTAGTTTTATTAATACTTTACATATTGAAGGAACAGATTTTTAAAAAGAA  721
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTTTATTAATACTTTACATATTGAAGGAACAGATTTTTAAAAAGAA  746

seq1  CATGTTTATCAGGTGTTTTTTAAGTCATATAAAAGGAAATAATGGAAAAA  771
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTATCAGGTGTTTTTTAAGTCATATAAAAGGAAATAATGGAAAAA  796

seq1  TACCATTTTCAGATTGTTTTTAAAAACAATTTCATCTGGATCTGGGGGCC  821
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATTTTCAGATTGTTTTTAAAAACAATTTCATCTGGATCTGGGGGCC  846

seq1  AAGTTTATTCAACTGAAAAATAAAAGTCAAATGTCTTTGGAATCTATGAC  871
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTATTCAACTGAAAAATAAAAGTCAAATGTCTTTGGAATCTATGAC  896

seq1  TTTAAAATACCATATGGAAATACTGTTTTGGGGCTCACAGTTCAAATAAA  921
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATACCATATGGAAATACTGTTTTGGGGCTCACAGTTCAAATAAA  946

seq1  TCATGCTTTTGTTTGTCTGTTTGTTTCTTACTACTACAGATTTAATGACA  971
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCTTTTGTTTGTCTGTTTGTTTCTTACTACTACAGATTTAATGACA  996

seq1  TTGGTAGGGACATATAACTTCTGGCACAGATTAGACACCAAGGGACTAAC  1021
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAGGGACATATAACTTCTGGCACAGATTAGACACCAAGGGACTAAC  1046

seq1  CTAAACTAAACGTGGAAATGGATACACTCAGGTATTACATCATTGAACTG  1071
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACTAAACGTGGAAATGGATACACTCAGGTATTACATCATTGAACTG  1096

seq1  CTTAACAGGAAAGCTGTTAACAGGAGGTCCAAACCTCTTGGAAGGCACCA  1121
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACAGGAAAGCTGTTAACAGGAGGTCCAAACCTCTTGGAAGGCACCA  1146

seq1  AGCAGCTAATAAAGGCTGGTCTTCTTCATCATCTTCAAGAATTC  1165
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTAATAAAGGCTGGTCTTCTTCATCATCTTCAAGAATTC  1190