BAC Information

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BAC

Clone NameB6Ng01-308H23
Chromosome3 (Build37)
Map Location 118,743,419 - 118,858,207
singlet/doubletdoublet
Overlap geneDpyd
Upstream genenone
Downstream geneLOC100043275, LOC100043278, Ptbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-308H23.bB6Ng01-308H23.g
ACCGA100984GA100985
length976988
definitionB6Ng01-308H23.b B6Ng01-308H23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,857,232 - 118,858,207)(118,743,419 - 118,744,405)
sequence
gaattctccggactcgaatgaatagcgcatacagtgagcgtgcctatcct
gaaggggaaaacgacaactccataacaccgtgcagaagaatgcagacaaa
aagagaacttgtttgtctgtattatgtgagacaataaggcggggagagag
aaagggaagtaagacagagaaggaaaaggaggctggaacacacaagatca
agaagggagggggtgccagagaaggcagaaacaaggtaacaaaaagggac
aaaagctgccttagaaaagaactgtcagacacaaacccctcaaaacaatg
gatggggggagagaaggagagagatgacagaagcggaacagcatgaaatc
tagtaagaaaaagaaacaaaaatttcaaataatggattttcagccacccc
tgctgctccttcagcgcctggtgtcacagtctcacagagctgtgcataat
ttattatggtcactcgctgccaggctgctggaaagggcaacaactctctg
aaaatactccccactgcctggatggcttaatgatccaccctttgtagcgg
ggtaggctggggactggcaggcagggcagagagagctgggcaggacccta
cagatgcaaagcttcccactgcggacaaaaggagggcttcactctcagac
aacctccatgggcttttgtggcccaggtttccaggttctaaagaatcaac
ctcttcctgcctgatgcagctttctagggtccaaagcccccttgaccctc
ttctacgggaaggatgggtggcttccgatgtaaagaggaagttgatggat
ttaaaaaataaaatcagaacttggtcagtcacactcatggctagaaaaaa
aaaatatgcttcattcttttcagcctagatattattttaaacgtttgata
tgatcttccatagttgtattttcatttaatatagtatgtgtgtgtgtgtg
gaacctgcatgccatgtaatgtccac

gaattctgactgcagactagaggcaccctgagttttatctcaggaatgta
gattcctcaacagcctggggtgtcaagctgggctcagcacataactcagg
tccttagaaatcttgggagtcaggaagagataaggaagagaggactataa
ttcaaacttttagggtcttaggtgccaggaagggatagggaggaggaggt
gaccagctcccaacacagggccatttggcttattagggtgggaaactgtg
aaaggtgtactttctcatggtatggtctccaagatcttggaacttccatt
attgacagctattgttggactaggtgaatcacagcttgtatgccatttta
atatgccactgatatatttaataaaattatgtatgtatacatatgtataa
gatagatagatagatagatagatagatagatagatagataagggagtctt
ttagagaatcctcactaacatagatgctgagactagtaaggaagagaaat
aaaagtatcaaagatgaatattttaagtatatggaataggaattccactt
tgacaacacctacagttacaaaagcctcacaaagaggcactctcagagag
tactgaaagcccatggtgtgaactgttttacaaacttaaggagacaaatg
catttggttatcctgattaaccagttgtgagaggcaagggatttggtaac
tctatatctaaacattttgactttttttttttttgaaaatttaagaaaat
aatgatgtttgattgctccaaacatctttggataaatgaactaaggaaaa
aaatgcaccctcatggtaaaattaaccagtttctactctttcagaaatgg
tagaggacaacaatcaattcagtgataaaatgactgggctcacatgtgaa
tcaacactctaaagggttctaaatgccttgaaacagacgcttctgcctag
caaccaaagaatccaaattgtacaaaatgaaactgaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_118857232_118858207
seq2: B6Ng01-308H23.b_49_1024 (reverse)

seq1  GTGGACA-TACAT-GCATGCAGG-TCCACACACACACACATACTAATAAT  47
      ||||||| ||||| ||||||||| |||||||||||||||||||| ||| |
seq2  GTGGACATTACATGGCATGCAGGTTCCACACACACACACATACT-ATATT  49

seq1  AAATGAAAATAACAACTATGGAAAGATCATATCAAACGTTTAAAATAATA  97
      |||||||||| |||||||||| ||||||||||||||||||||||||||||
seq2  AAATGAAAAT-ACAACTATGG-AAGATCATATCAAACGTTTAAAATAATA  97

seq1  TCTAGGCTTGAAAAGAATGAAGCATA-TTTTTTTTTCTAGCCATGAGTGT  146
      ||||||| |||||||||||||||||| |||||||||||||||||||||||
seq2  TCTAGGC-TGAAAAGAATGAAGCATATTTTTTTTTTCTAGCCATGAGTGT  146

seq1  GACTGACCAAGTTCTGATTTTATTTTTTAAATCCATCAACTTCCTCTTTA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGACCAAGTTCTGATTTTATTTTTTAAATCCATCAACTTCCTCTTTA  196

seq1  CATCGGAAGCCACCCATCCTTCCCGTAGAAGAGGGTCAAGGGGGCTTTGG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGGAAGCCACCCATCCTTCCCGTAGAAGAGGGTCAAGGGGGCTTTGG  246

seq1  ACCCTAGAAAGCTGCATCAGGCAGGAAGAGGTTGATTCTTTAGAACCTGG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTAGAAAGCTGCATCAGGCAGGAAGAGGTTGATTCTTTAGAACCTGG  296

seq1  AAACCTGGGCCACAAAAGCCCATGGAGGTTGTCTGAGAGTGAAGCCCTCC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTGGGCCACAAAAGCCCATGGAGGTTGTCTGAGAGTGAAGCCCTCC  346

seq1  TTTTGTCCGCAGTGGGAAGCTTTGCATCTGTAGGGTCCTGCCCAGCTCTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCCGCAGTGGGAAGCTTTGCATCTGTAGGGTCCTGCCCAGCTCTC  396

seq1  TCTGCCCTGCCTGCCAGTCCCCAGCCTACCCCGCTACAAAGGGTGGATCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCCTGCCTGCCAGTCCCCAGCCTACCCCGCTACAAAGGGTGGATCA  446

seq1  TTAAGCCATCCAGGCAGTGGGGAGTATTTTCAGAGAGTTGTTGCCCTTTC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCCATCCAGGCAGTGGGGAGTATTTTCAGAGAGTTGTTGCCCTTTC  496

seq1  CAGCAGCCTGGCAGCGAGTGACCATAATAAATTATGCACAGCTCTGTGAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCCTGGCAGCGAGTGACCATAATAAATTATGCACAGCTCTGTGAG  546

seq1  ACTGTGACACCAGGCGCTGAAGGAGCAGCAGGGGTGGCTGAAAATCCATT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGACACCAGGCGCTGAAGGAGCAGCAGGGGTGGCTGAAAATCCATT  596

seq1  ATTTGAAATTTTTGTTTCTTTTTCTTACTAGATTTCATGCTGTTCCGCTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAATTTTTGTTTCTTTTTCTTACTAGATTTCATGCTGTTCCGCTT  646

seq1  CTGTCATCTCTCTCCTTCTCTCCCCCCATCCATTGTTTTGAGGGGTTTGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCATCTCTCTCCTTCTCTCCCCCCATCCATTGTTTTGAGGGGTTTGT  696

seq1  GTCTGACAGTTCTTTTCTAAGGCAGCTTTTGTCCCTTTTTGTTACCTTGT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGACAGTTCTTTTCTAAGGCAGCTTTTGTCCCTTTTTGTTACCTTGT  746

seq1  TTCTGCCTTCTCTGGCACCCCCTCCCTTCTTGATCTTGTGTGTTCCAGCC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCTTCTCTGGCACCCCCTCCCTTCTTGATCTTGTGTGTTCCAGCC  796

seq1  TCCTTTTCCTTCTCTGTCTTACTTCCCTTTCTCTCTCCCCGCCTTATTGT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTCCTTCTCTGTCTTACTTCCCTTTCTCTCTCCCCGCCTTATTGT  846

seq1  CTCACATAATACAGACAAACAAGTTCTCTTTTTGTCTGCATTCTTCTGCA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACATAATACAGACAAACAAGTTCTCTTTTTGTCTGCATTCTTCTGCA  896

seq1  CGGTGTTATGGAGTTGTCGTTTTCCCCTTCAGGATAGGCACGCTCACTGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGTTATGGAGTTGTCGTTTTCCCCTTCAGGATAGGCACGCTCACTGT  946

seq1  ATGCGCTATTCATTCGAGTCCGGAGAATTC  976
      ||||||||||||||||||||||||||||||
seq2  ATGCGCTATTCATTCGAGTCCGGAGAATTC  976


seq1: chr3_118743419_118744405
seq2: B6Ng01-308H23.g_67_1054

seq1  GAATTCTGACTGCAGACTAGAGGCACCCTGAGTTTTATCTCAGGAATGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGACTGCAGACTAGAGGCACCCTGAGTTTTATCTCAGGAATGTA  50

seq1  GATTCCTCAACAGCCTGGGGTGTCAAGCTGGGCTCAGCACATAACTCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCTCAACAGCCTGGGGTGTCAAGCTGGGCTCAGCACATAACTCAGG  100

seq1  TCCTTAGAAATCTTGGGAGTCAGGAAGAGATAAGGAAGAGAGGACTATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAGAAATCTTGGGAGTCAGGAAGAGATAAGGAAGAGAGGACTATAA  150

seq1  TTCAAACTTTTAGGGTCTTAGGTGCCAGGAAGGGATAGGGAGGAGGAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACTTTTAGGGTCTTAGGTGCCAGGAAGGGATAGGGAGGAGGAGGT  200

seq1  GACCAGCTCCCAACACAGGGCCATTTGGCTTATTAGGGTGGGAAACTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGCTCCCAACACAGGGCCATTTGGCTTATTAGGGTGGGAAACTGTG  250

seq1  AAAGGTGTACTTTCTCATGGTATGGTCTCCAAGATCTTGGAACTTCCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTGTACTTTCTCATGGTATGGTCTCCAAGATCTTGGAACTTCCATT  300

seq1  ATTGACAGCTATTGTTGGACTAGGTGAATCACAGCTTGTATGCCATTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACAGCTATTGTTGGACTAGGTGAATCACAGCTTGTATGCCATTTTA  350

seq1  ATATGCCACTGATATATTTAATAAAATTATGTATGTATACATATGTATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCCACTGATATATTTAATAAAATTATGTATGTATACATATGTATAA  400

seq1  GATAGATAGATAGATAGATAGATAGATAGATAGATAGATAAGGGAGTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGATAGATAGATAGATAGATAGATAGATAGATAGATAAGGGAGTCTT  450

seq1  TTAGAGAATCCTCACTAACATAGATGCTGAGACTAGTAAGGAAGAGAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGAATCCTCACTAACATAGATGCTGAGACTAGTAAGGAAGAGAAAT  500

seq1  AAAAGTATCAAAGATGAATATTTTAAGTATATGGAATAGGAATTCCACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTATCAAAGATGAATATTTTAAGTATATGGAATAGGAATTCCACTT  550

seq1  TGACAACACCTACAGTTACAAAAGCCTCACAAAGAGGCACTCTCAGAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAACACCTACAGTTACAAAAGCCTCACAAAGAGGCACTCTCAGAGAG  600

seq1  TACTGAAAGCCCATGGTGTGAACTGTTTTACAAACTTAAGGAGACAAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAAAGCCCATGGTGTGAACTGTTTTACAAACTTAAGGAGACAAATG  650

seq1  CATTTGGTTATCCTGATTAACCAGTTGTGAGAGGCAAGGGATTTGGTAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGGTTATCCTGATTAACCAGTTGTGAGAGGCAAGGGATTTGGTAAC  700

seq1  TCTATATCTAAACATTTTGAC-TTTTTTTTTTTTGAAAATTTAAGAAAAT  749
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TCTATATCTAAACATTTTGACTTTTTTTTTTTTTGAAAATTTAAGAAAAT  750

seq1  AATGATGTTTGATTGCTCCAAACATCTTTGGATAAATGAACTAAGGAAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATGTTTGATTGCTCCAAACATCTTTGGATAAATGAACTAAGGAAAA  800

seq1  AAATGCACCCTCATGGTAAAATTAACCAGTTTCTACTCTTTCAGAAATGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCACCCTCATGGTAAAATTAACCAGTTTCTACTCTTTCAGAAATGG  850

seq1  TAGAGGACAACAATCAATTCAGTGATAAAAATGACT-GGCTCACATGTGA  898
      |||||||||||||||||||||||||| ||||||||| |||||||||||||
seq2  TAGAGGACAACAATCAATTCAGTGAT-AAAATGACTGGGCTCACATGTGA  899

seq1  ATCAACACTCTAAAGGGTTCTAAATGCCTTGAAACAGACGCTTCTGCCTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACACTCTAAAGGGTTCTAAATGCCTTGAAACAGACGCTTCTGCCTA  949

seq1  GCAACCAAAGATCCCAAATTGTACAAAATGAAACTGAAC  987
      |||||||||||  ||||||||||||||||||||||||||
seq2  GCAACCAAAGAATCCAAATTGTACAAAATGAAACTGAAC  988


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