BAC Information

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BAC

Clone NameB6Ng01-308I18
Chromosome3 (Build37)
Map Location 32,956,333 - 33,058,958
singlet/doubletdoublet
Overlap genePex2
Upstream geneKcnmb2, LOC665514, Zmat3, 4930429B21Rik, Pik3ca, Kcnmb3, Zfp639, Mfn1, Gnb4, LOC100040977, Actl6a, Mrpl47, Ndufb5, Usp13
Downstream geneEG545512, LOC100041058, Ttc14, Ccdc39, LOC100040232, LOC100041072, Fxr1h, Dnajc19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-308I18.bB6Ng01-308I18.g
ACCGA101019GA101020
length1,1481,162
definitionB6Ng01-308I18.b B6Ng01-308I18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,057,793 - 33,058,958)(32,956,333 - 32,957,508)
sequence
gaattccgggtctctctggctagtaattctagcctaagcagtgagtttca
gggtgcactgactatgacaattctgtggttttcaagaagatgatgagctt
gtctccaggtgcaagatgcctctactcacaggcctgcagggttgtcattc
catcctgcagaaatgtcttcttatcattacattgttgtcattgtgaggaa
aatatctggaataaacaatacatgaaaggaaagatttagttttgcacatg
acttcaaaagtctaagtccatggtttcttgactgattgctcttggctgat
tgagcatcatggtggcaggagtatttgccaagtgaaagatatttacccca
tagacagaaagaagaagaagaaatgagagatagacaggaaaataatagag
aagggggagagaggccagagacaagataccctgaaagaccttctcccagt
gacctacttccttcagctaggcttcaaggtccttgtctttagttatgact
caggaagcacattcattaagtacatgacctgtgtaagatcaaaggtgggg
tggtctgggcagaatatgatcatagcaaaatctcatctctactatattta
ctagaccataaagttctttgtgcatcttggatcatctcttaagagaactc
tggcagccaaagcttacaaagacagccaagacttcttttgctgaacaatt
gtccatatttggtccttgtgaaaatgcaacaaggaatgggacacagataa
ggtatagtgtaaccaaggaagactggaccagactgaagacatcctagggt
aaggatggagaggacagtgcagcctgatgaggagatattcatatcccaag
agtcctcaaggattattctgagaagcttccctccttttctgcatgttctt
taatagcctggaagcacaccgggtcccaaacaagcattccttcagaagga
tttagcaaatgcatactgtttagcatttttttctttttctttactatttt
cactaagctgtcagtatttcagtcttcagtgtcagcagagatggggattt
catttatgctctctcagcagacaagagtcatctctttcagctaagcactg
ctagcaaatgtcaggagctcgaatctccagtactgatccttatattat
gaattctgtcagtgtgaacacctgcagctttagtctgctgtggacatggc
acacgacaattggaaaccggtttgctattgtactcttgtggcccaccttt
gcttctcataccacctcgccaggttgcaggaagagacagtagaatgaaga
tggctagattgcttcttttagcatcccgttaaagcccaaagctgtggcat
tagaacctgggggctgggtcaagtttcctgactcaggtttctgagctggt
gccccacctgagggaaagtattaggaatggttattcagaacatgggttgt
agtttgtgtcatttaaaatcccatgctggaaaaaaaaacccacaactttc
ttcctctaaatttccattgttcagttgtggttaatggtgtctgcttctca
aggttgtggtaaaggttaaggaaatggtaggtaggaacgtcctagtatgt
caggctccctaatgggactacagtttccaggggagtctgcatctggacag
ctccaactgtgcccagcagagggcatggaacacagggagactcaatcaat
gtctgacacatcttaccccagtctctgaaaaaaccctggctcctgcatgc
tgtgggcatttattcagccccatgccttgcttcctgtcatcactacatca
tgacagctggtccctcagccagtcagctctgacagaaaatctctgacacg
tgccaccactttctctcaccatttaccctaggccataccacccaaagtca
cacagtgcattttctgcctcctcatggtttccaggataaaatacaaccac
atatttttcattgttggcaaaaccaaaacaaattcaaacaagcaaaaaca
aacaaacaaacaaacaaacaaacaaacaaacaaaaaccagaaacccaaac
caaaccaagataaaacaacctcaagcacaggtaaaagcttttggcttgga
agccagatatggcgttgccattgtctccttgtgggacacttcacctgccc
tgtctgcattggacccctcttatgccccagctcatccagctcaatctgag
atctgttgtaatgaaacactagtgtttgagatgatatgactgtaccgaga
atcagacgacttgctgtggtatgcaagttagaacggaagcggtgtaatgg
aggcacagctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_33057793_33058958
seq2: B6Ng01-308I18.b_46_1193 (reverse)

seq1  ATAATAAAAAGGATCAGGAAATTGGAGATTCTGAGGCTTCTTGACATTTG  50
      ||||| | |||||||||   | ||||||||| |||   || |||||||||
seq2  ATAAT-ATAAGGATCAG--TACTGGAGATTC-GAG--CTCCTGACATTTG  44

seq1  CTAGCCAAGTGCTTTGGCTTGGAAAGAGATTGACTTCTTGTCTGCTGAGA  100
      |||||  ||||| || |||  |||||||| |||| |||||||||||||||
seq2  CTAGC--AGTGC-TTAGCT--GAAAGAGA-TGAC-TCTTGTCTGCTGAGA  87

seq1  GAAGCATAAATGGAAATCCCCATCTCTGCTGACACTGAAGACTGGAAAAT  150
      | ||||||||| ||||||||||||||||||||||||||||||||  ||||
seq2  G-AGCATAAAT-GAAATCCCCATCTCTGCTGACACTGAAGACTG--AAAT  133

seq1  ACTGACAGCTTAGTGAAAATAGTTAAAGAAAAGGAAAAAAATGCTAAACA  200
      |||||||||||||||||||||| ||||||||| |||||||||||||||||
seq2  ACTGACAGCTTAGTGAAAATAG-TAAAGAAAAAGAAAAAAATGCTAAACA  182

seq1  GTATGCATTTGCTAAATCCTTCTGAAGGAATGCTTGTTTGGGACCCGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCATTTGCTAAATCCTTCTGAAGGAATGCTTGTTTGGGACCCGGTG  232

seq1  TGCTTCCAGGCTATTAAAGAACATGCAGAAAAGGAGGGAAGCTTCTCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCCAGGCTATTAAAGAACATGCAGAAAAGGAGGGAAGCTTCTCAGA  282

seq1  ATAATCCTTGAGGACTCTTGGGATATGAATATCTCCTCATCAGGCTGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCCTTGAGGACTCTTGGGATATGAATATCTCCTCATCAGGCTGCAC  332

seq1  TGTCCTCTCCATCCTTACCCTAGGATGTCTTCAGTCTGGTCCAGTCTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTCTCCATCCTTACCCTAGGATGTCTTCAGTCTGGTCCAGTCTTCC  382

seq1  TTGGTTACACTATACCTTATCTGTGTCCCATTCCTTGTTGCATTTTCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTACACTATACCTTATCTGTGTCCCATTCCTTGTTGCATTTTCACA  432

seq1  AGGACCAAATATGGACAATTGTTCAGCAAAAGAAGTCTTGGCTGTCTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCAAATATGGACAATTGTTCAGCAAAAGAAGTCTTGGCTGTCTTTG  482

seq1  TAAGCTTTGGCTGCCAGAGTTCTCTTAAGAGATGATCCAAGATGCACAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTTTGGCTGCCAGAGTTCTCTTAAGAGATGATCCAAGATGCACAAA  532

seq1  GAACTTTATGGTCTAGTAAATATAGTAGAGATGAGATTTTGCTATGATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTTATGGTCTAGTAAATATAGTAGAGATGAGATTTTGCTATGATCA  582

seq1  TATTCTGCCCAGACCACCCCACCTTTGATCTTACACAGGTCATGTACTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTGCCCAGACCACCCCACCTTTGATCTTACACAGGTCATGTACTTA  632

seq1  ATGAATGTGCTTCCTGAGTCATAACTAAAGACAAGGACCTTGAAGCCTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGTGCTTCCTGAGTCATAACTAAAGACAAGGACCTTGAAGCCTAG  682

seq1  CTGAAGGAAGTAGGTCACTGGGAGAAGGTCTTTCAGGGTATCTTGTCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGGAAGTAGGTCACTGGGAGAAGGTCTTTCAGGGTATCTTGTCTCT  732

seq1  GGCCTCTCTCCCCCTTCTCTATTATTTTCCTGTCTATCTCTCATTTCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCTCTCCCCCTTCTCTATTATTTTCCTGTCTATCTCTCATTTCTTC  782

seq1  TTCTTCTTTCTGTCTATGGGGTAAATATCTTTCACTTGGCAAATACTCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTTCTGTCTATGGGGTAAATATCTTTCACTTGGCAAATACTCCT  832

seq1  GCCACCATGATGCTCAATCAGCCAAGAGCAATCAGTCAAGAAACCATGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCATGATGCTCAATCAGCCAAGAGCAATCAGTCAAGAAACCATGGA  882

seq1  CTTAGACTTTTGAAGTCATGTGCAAAACTAAATCTTTCCTTTCATGTATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGACTTTTGAAGTCATGTGCAAAACTAAATCTTTCCTTTCATGTATT  932

seq1  GTTTATTCCAGATATTTTCCTCACAATGACAACAATGTAATGATAAGAAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTCCAGATATTTTCCTCACAATGACAACAATGTAATGATAAGAAG  982

seq1  ACATTTCTGCAGGATGGAATGACAACCCTGCAGGCCTGTGAGTAGAGGCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCTGCAGGATGGAATGACAACCCTGCAGGCCTGTGAGTAGAGGCA  1032

seq1  TCTTGCACCTGGAGACAAGCTCATCATCTTCTTGAAAACCACAGAATTGT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCACCTGGAGACAAGCTCATCATCTTCTTGAAAACCACAGAATTGT  1082

seq1  CATAGTCAGTGCACCCTGAAACTCACTGCTTAGGCTAGAATTACTAGCCA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTCAGTGCACCCTGAAACTCACTGCTTAGGCTAGAATTACTAGCCA  1132

seq1  GAGAGACCCGGAATTC  1166
      ||||||||||||||||
seq2  GAGAGACCCGGAATTC  1148

seq1: chr3_32956333_32957508
seq2: B6Ng01-308I18.g_69_1230

seq1  GAATTCTGTCAGTGTGAACACCTGCAGCTTTAGTCTGCTGTGGACATGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCAGTGTGAACACCTGCAGCTTTAGTCTGCTGTGGACATGGC  50

seq1  ACACGACAATTGGAAACCGGTTTGCTATTGTACTCTTGTGGCCCACCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGACAATTGGAAACCGGTTTGCTATTGTACTCTTGTGGCCCACCTTT  100

seq1  GCTTCTCATACCACCTCGCCAGGTTGCAGGAAGAGACAGTAGAATGAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTCATACCACCTCGCCAGGTTGCAGGAAGAGACAGTAGAATGAAGA  150

seq1  TGGCTAGATTGCTTCTTTTAGCATCCCGTTAAAGCCCAAAGCTGTGGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAGATTGCTTCTTTTAGCATCCCGTTAAAGCCCAAAGCTGTGGCAT  200

seq1  TAGAACCTGGGGGCTGGGTCAAGTTTCCTGACTCAGGTTTCTGAGCTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACCTGGGGGCTGGGTCAAGTTTCCTGACTCAGGTTTCTGAGCTGGT  250

seq1  GCCCCACCTGAGGGAAAGTATTAGGAATGGTTATTCAGAACATGGGTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCACCTGAGGGAAAGTATTAGGAATGGTTATTCAGAACATGGGTTGT  300

seq1  AGTTTGTGTCATTTAAAATCCCATGCTGGAAAAAAAAACCCACAACTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGTGTCATTTAAAATCCCATGCTGGAAAAAAAAACCCACAACTTTC  350

seq1  TTCCTCTAAATTTCCATTGTTCAGTTGTGGTTAATGGTGTCTGCTTCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTAAATTTCCATTGTTCAGTTGTGGTTAATGGTGTCTGCTTCTCA  400

seq1  AGGTTGTGGTAAAGGTTAAGGAAATGGTAGGTAGGAACGTCCTAGTATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGTGGTAAAGGTTAAGGAAATGGTAGGTAGGAACGTCCTAGTATGT  450

seq1  CAGGCTCCCTAATGGGACTACAGTTTCCAGGGGAGTCTGCATCTGGACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTCCCTAATGGGACTACAGTTTCCAGGGGAGTCTGCATCTGGACAG  500

seq1  CTCCAACTGTGCCCAGCAGAGGGCATGGAACACAGGGAGACTCAATCAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAACTGTGCCCAGCAGAGGGCATGGAACACAGGGAGACTCAATCAAT  550

seq1  GTCTGACACATCTTACCCCAGTCTCTGAAAAAACCCTGGCTCCTGCATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGACACATCTTACCCCAGTCTCTGAAAAAACCCTGGCTCCTGCATGC  600

seq1  TGTGGGCATTTATTCAGCCCCATGCCTTGCTTCCTGTCATCACTACATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGCATTTATTCAGCCCCATGCCTTGCTTCCTGTCATCACTACATCA  650

seq1  TGACAGCTGGTCCCTCAGCCAGTCAGCTCTGACAGAAAATCTCTGACACG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGCTGGTCCCTCAGCCAGTCAGCTCTGACAGAAAATCTCTGACACG  700

seq1  TGCCACCACTTTCTCTCACCATTTACCCTAGGCCATACCACCCAAAGTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACCACTTTCTCTCACCATTTACCCTAGGCCATACCACCCAAAGTCA  750

seq1  CACAGTGCATTTTCTGCCTCCTCATGGTTTCCAGGATAAAATACAACCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGCATTTTCTGCCTCCTCATGGTTTCCAGGATAAAATACAACCAC  800

seq1  ATATTTTTCATTGTTGGCAAAACCAAAACAAATTCAAACAAGCAAAAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTTCATTGTTGGCAAAACCAAAACAAATTCAAACAAGCAAAAACA  850

seq1  AACAAACAAACAAACAAACAAACAAAACAAAACAAAAAACCAGAAACCCA  900
      ||||||||||||||||||||||| |||||||   ||||||||||||||||
seq2  AACAAACAAACAAACAAACAAAC-AAACAAA--CAAAAACCAGAAACCCA  897

seq1  AACCAAACCAAGATAAAAACAACCTCAAGCACAGGTAAAAGCTTTTGGCT  950
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AACCAAACCAAGAT-AAAACAACCTCAAGCACAGGTAAAAGCTTTTGGCT  946

seq1  TGGAAGCCAGATATGGCGTTGCCATTGTCTCCTTGTGGGACACTTCACCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGCCAGATATGGCGTTGCCATTGTCTCCTTGTGGGACACTTCACCT  996

seq1  GCCCTGGTCTGCCATTTGGACCCCTCTATTGCCCCCAGCCTCATCCAAGG  1050
      ||||| ||||||   ||||||||||||  || |||||| ||||||||  |
seq2  GCCCT-GTCTGC--ATTGGACCCCTCTTATG-CCCCAG-CTCATCCA--G  1039

seq1  CTCCAATCTGAGATCTGTTGTAAATGAAACACTAAGTGTTTGAGATGAAT  1100
      || |||||||||||||||||| ||||||||||| ||||||||||||| ||
seq2  CT-CAATCTGAGATCTGTTGT-AATGAAACACT-AGTGTTTGAGATG-AT  1085

seq1  ATGACTGGAACGAGAATCCAGACCGCACTGG--GTGGTGATGCAGAGTAA  1148
      ||||||| | ||||||| |||||   ||| |  ||||| ||||| ||| |
seq2  ATGACTGTACCGAGAAT-CAGAC--GACTTGCTGTGGT-ATGCA-AGTTA  1130

seq1  GAAAGG-AGC-GTGTA--TGAGGCACAGCTGC  1176
      ||| || ||| |||||   |||||||||||||
seq2  GAACGGAAGCGGTGTAATGGAGGCACAGCTGC  1162