BAC Information

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BAC

Clone NameB6Ng01-308L05
Chromosome3 (Build37)
Map Location 60,642,984 - 60,763,096
singlet/doubletdoublet
Overlap geneLOC100040501, EG666853
Upstream geneLOC669780, EG666803, C130079G13Rik, LOC676914, Aadacl2, Aadac, Sucnr1, LOC669823, LOC100040485, Mbnl1, LOC676933
Downstream geneP2ry1, Rap2b, LOC666891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-308L05.bB6Ng01-308L05.g
ACCGA101133GA101134
length1,1311,098
definitionB6Ng01-308L05.b B6Ng01-308L05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,761,967 - 60,763,096)(60,642,984 - 60,644,071)
sequence
gaattcatctttcaatgatagtccagacaaattctattgacatatatttg
ctttcgctataaaacatctccactgactggatgacagaatgtcacagtgt
gagactactttttatggctttcagattgtgctatcccagaccagctggag
cctctcatgaagcatcatttctcaagacactgtttttcacaaagcacatc
cagtcttggagagaattgggcaacacaggcatcctcagagtgatgcaagt
cgactattcttcagtctggtccaaaactgtgacatattaaaataggtttg
tttttctgaactttcatgtaaactttgaataatactcatgctgtaaccac
ttgtttcctagattcatctatttacatgacacttgaagtaatttccacag
ctacttgccaggctcaaatggaactatgttcactgatgggtatttttaca
cagaagctggtgtctaatctccaatttctttagaggacttcttcctgcaa
tgaatattcttcttactaaatgagctcaaactattttctaaacgggcgct
ggttttagttaattgactacagagaaggtgataccactcagcacctattc
ttgcttacatttgtacataatgtctggcaccagaagttctcattccagag
ccctcattccatctgtcttcctacaaacaaatatctgaagaaagagaagc
ccaagattcagtttcaagtgtggagaacaagaagctacagagccagagag
gacctgcatgcctctagcactgggaggcagtaaggggatagtggagagaa
tgctggtgatcctttatatttgacatccttttgccttctagtattagtgt
gaccttctagctatgctgagaaagataaaaagaaaagcacccagtagata
agcagtaagaatcttattcagtttttatttcacttccatgtcaagatcag
gaaaatgaaaaggtgatgtatattttgactgatgtcagagggtagagtcc
aacggttgacacattcatctaatctctacgattcttgccaccttcttcgt
ggagttgatatcagtgggttagcactaatggggaaaggtccacgatggtg
gcttttataaaatagtctaagctcattttta

gaattcagtttcattctttaacatatcaacagcaagttttgtctatcatc
tgttgccatggctaccccttccccatgtgtggacttagtatttataaaag
atcaattgaccttagatttcacatgttttctttgttctgtctgtgcctgt
ggtaattacagctttgtaaaatgtgaaagggggtatgttcttttttttat
atatgattacttcagcaatttatggtcttcagtggtttcatataaatttt
agggttgattttctatttcaatgaagaattgcattggtattttgaaaggt
attacttccaatatgaatccaagcaattttttccatggaagttggacatt
ctaggaacactaacttttcaatcctaggattgcagattacatttccacaa
atttgtaaatccttcaattgttttaaatggcaacagggctgaaactgcag
ggatttatgttaaataaaatcagccagttccagtaagacaaacaccacat
gtgacttcaatgttcagaatctaaaaaaaaaaaaaatgttgaacttactg
aagtaaacacttataatagcaatacctaaggactctagtatactggtctg
gcatggaaaagtaagggagagacaggacaatgggcatcaagttacagcca
tataagatgacagtctggagtgctaaggtaaataaaaaagaaatgccatt
cctgccttccaaaatagaagaaaaaaattttagcaaattttcaagtattt
gaagtgacaaatatgcaaaccacattatgagatacatatatatatatata
tgtatatatatatacatatatatatatatatgtatgtatatgtacacaca
cacaatgtagataatatatggatcacttttgtacttcataaatatattta
attcttacctgccaatttaaaacaaaacagcacttatgtttaataaagac
tttaatagaataacagcacttttaagaagaaaagtgtttttatttactgc
ttaagcatagcttacaagaaaacatttttatagtgcacacatgtaataac
tgatagtagcttctgaatattcttcaatggaaataaatttatggataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_60761967_60763096
seq2: B6Ng01-308L05.b_45_1175 (reverse)

seq1  TAAAAATGAGGCTTAGACTATTTTATAAA--GCACATTTGTG--ACTTTC  46
      ||||||||| |||||||||||||||||||   |||  | |||   |||||
seq2  TAAAAATGA-GCTTAGACTATTTTATAAAAGCCACCATCGTGGACCTTTC  49

seq1  CCCATTAGGTGCTAACCCACTGATAATCAACTCCACGAAGAAGGTGGCAA  96
      ||||||| |||||||||||||||| |||||||||||||||||||||||||
seq2  CCCATTA-GTGCTAACCCACTGAT-ATCAACTCCACGAAGAAGGTGGCAA  97

seq1  GAATCGTAGAGATTAGATGAATGTTGTCAACCGTTGGACTCTACCCTCTG  146
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GAATCGTAGAGATTAGATGAATG-TGTCAACCGTTGGACTCTACCCTCTG  146

seq1  ACATCAGTC-AAATATACATCACCTTTTCATTTTCCTGATCTTGACATGG  195
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAGTCAAAATATACATCACCTTTTCATTTTCCTGATCTTGACATGG  196

seq1  AAGTGAAATAAAAACTGAATAAGATTCTTACTGCTTATCTACTGGGTGCT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAAATAAAAACTGAATAAGATTCTTACTGCTTATCTACTGGGTGCT  246

seq1  TTTCTTTTTATCTTTCTCAGCATAGCTAGAAGGTCACACTAATACTAGAA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTTATCTTTCTCAGCATAGCTAGAAGGTCACACTAATACTAGAA  296

seq1  GGCAAAAGGATGTCAAATATAAAGGATCACCAGCATTCTCTCCACTATCC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAAGGATGTCAAATATAAAGGATCACCAGCATTCTCTCCACTATCC  346

seq1  CCTTACTGCCTCCCAGTGCTAGAGGCATGCAGGTCCTCTCTGGCTCTGTA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACTGCCTCCCAGTGCTAGAGGCATGCAGGTCCTCTCTGGCTCTGTA  396

seq1  GCTTCTTGTTCTCCACACTTGAAACTGAATCTTGGGCTTCTCTTTCTTCA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTGTTCTCCACACTTGAAACTGAATCTTGGGCTTCTCTTTCTTCA  446

seq1  GATATTTGTTTGTAGGAAGACAGATGGAATGAGGGCTCTGGAATGAGAAC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTGTTTGTAGGAAGACAGATGGAATGAGGGCTCTGGAATGAGAAC  496

seq1  TTCTGGTGCCAGACATTATGTACAAATGTAAGCAAGAATAGGTGCTGAGT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGTGCCAGACATTATGTACAAATGTAAGCAAGAATAGGTGCTGAGT  546

seq1  GGTATCACCTTCTCTGTAGTCAATTAACTAAAACCAGCGCCCGTTTAGAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCACCTTCTCTGTAGTCAATTAACTAAAACCAGCGCCCGTTTAGAA  596

seq1  AATAGTTTGAGCTCATTTAGTAAGAAGAATATTCATTGCAGGAAGAAGTC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTTTGAGCTCATTTAGTAAGAAGAATATTCATTGCAGGAAGAAGTC  646

seq1  CTCTAAAGAAATTGGAGATTAGACACCAGCTTCTGTGTAAAAATACCCAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAAGAAATTGGAGATTAGACACCAGCTTCTGTGTAAAAATACCCAT  696

seq1  CAGTGAACATAGTTCCATTTGAGCCTGGCAAGTAGCTGTGGAAATTACTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAACATAGTTCCATTTGAGCCTGGCAAGTAGCTGTGGAAATTACTT  746

seq1  CAAGTGTCATGTAAATAGATGAATCTAGGAAACAAGTGGTTACAGCATGA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGTCATGTAAATAGATGAATCTAGGAAACAAGTGGTTACAGCATGA  796

seq1  GTATTATTCAAAGTTTACATGAAAGTTCAGAAAAACAAACCTATTTTAAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTATTCAAAGTTTACATGAAAGTTCAGAAAAACAAACCTATTTTAAT  846

seq1  ATGTCACAGTTTTGGACCAGACTGAAGAATAGTCGACTTGCATCACTCTG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCACAGTTTTGGACCAGACTGAAGAATAGTCGACTTGCATCACTCTG  896

seq1  AGGATGCCTGTGTTGCCCAATTCTCTCCAAGACTGGATGTGCTTTGTGAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGCCTGTGTTGCCCAATTCTCTCCAAGACTGGATGTGCTTTGTGAA  946

seq1  AAACAGTGTCTTGAGAAATGATGCTTCATGAGAGGCTCCAGCTGGTCTGG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTGTCTTGAGAAATGATGCTTCATGAGAGGCTCCAGCTGGTCTGG  996

seq1  GATAGCACAATCTGAAAGCCATAAAAAGTAGTCTCACACTGTGACATTCT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCACAATCTGAAAGCCATAAAAAGTAGTCTCACACTGTGACATTCT  1046

seq1  GTCATCCAGTCAGTGGAGATGTTTTATAGCGAAAGCAAATATATGTCAAT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCCAGTCAGTGGAGATGTTTTATAGCGAAAGCAAATATATGTCAAT  1096

seq1  AGAATTTGTCTGGACTATCATTGAAAGATGAATTC  1130
      |||||||||||||||||||||||||||||||||||
seq2  AGAATTTGTCTGGACTATCATTGAAAGATGAATTC  1131


seq1: chr3_60642984_60644071
seq2: B6Ng01-308L05.g_68_1165

seq1  GAATTCAGTTTCATTCTTTAACATATCAACAGCAAGTTTTGTCTATCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTTCATTCTTTAACATATCAACAGCAAGTTTTGTCTATCATC  50

seq1  TGTTGCCATGGCTACCCCTTCCCCATGTGTGGACTTAGTATTTATAAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCCATGGCTACCCCTTCCCCATGTGTGGACTTAGTATTTATAAAAG  100

seq1  ATCAATTGACCTTAGATTTCACATGTTTTCTTTGTTCTGTCTGTGCCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATTGACCTTAGATTTCACATGTTTTCTTTGTTCTGTCTGTGCCTGT  150

seq1  GGTAATTACAGCTTTGTAAAATGTGAAAGGGGGTATGTTCTTTTTTTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATTACAGCTTTGTAAAATGTGAAAGGGGGTATGTTCTTTTTTTTAT  200

seq1  ATATGATTACTTCAGCAATTTATGGTCTTCAGTGGTTTCATATAAATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGATTACTTCAGCAATTTATGGTCTTCAGTGGTTTCATATAAATTTT  250

seq1  AGGGTTGATTTTCTATTTCAATGAAGAATTGCATTGGTATTTTGAAAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTGATTTTCTATTTCAATGAAGAATTGCATTGGTATTTTGAAAGGT  300

seq1  ATTACTTCCAATATGAATCCAAGCAATTTTTTCCATGGAAGTTGGACATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTTCCAATATGAATCCAAGCAATTTTTTCCATGGAAGTTGGACATT  350

seq1  CTAGGAACACTAACTTTTCAATCCTAGGATTGCAGATTACATTTCCACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAACACTAACTTTTCAATCCTAGGATTGCAGATTACATTTCCACAA  400

seq1  ATTTGTAAATCCTTCAATTGTTTTAAATGGCAACAGGGCTGAAACTGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTAAATCCTTCAATTGTTTTAAATGGCAACAGGGCTGAAACTGCAG  450

seq1  GGATTTATGTTAAATAAAATCAGCCAGTTCCAGTAAGACAAACACCACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTATGTTAAATAAAATCAGCCAGTTCCAGTAAGACAAACACCACAT  500

seq1  GTGACTTCAATGTTCAGAATCTAAAAAAAAAAAAAATGTTGAACTTACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTTCAATGTTCAGAATCTAAAAAAAAAAAAAATGTTGAACTTACTG  550

seq1  AAGTAAACACTTATAATAGCAATACCTAAGGACTCTAGTATACTGGTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAACACTTATAATAGCAATACCTAAGGACTCTAGTATACTGGTCTG  600

seq1  GCATGGAAAAGTAAGGGAGAGACAGGACAATGGGCATCAAGTTACAGCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGAAAAGTAAGGGAGAGACAGGACAATGGGCATCAAGTTACAGCCA  650

seq1  TATAAGATGACAGTCTGGAGTGCTAAGGTAAATAAAAAAGAAATGCCATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGATGACAGTCTGGAGTGCTAAGGTAAATAAAAAAGAAATGCCATT  700

seq1  CCTGCCTTCCAAAATAGAAGAAAAAAATTTTAGCAAATTTTCAAGTATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTTCCAAAATAGAAGAAAAAAATTTTAGCAAATTTTCAAGTATTT  750

seq1  GAAGTGACAAATATGCAAACCACATTATGAGATACATATATATATATATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGACAAATATGCAAACCACATTATGAGATACATATATATATATATA  800

seq1  TGTATATATATATACATATATATATATATATGTATGTATATGTACACACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATATATATACATATATATATATATATGTATGTATATGTACACACA  850

seq1  CACAATGTAGATAATATATGGATCAC-TTTGTACTTCATAAATATATTTA  899
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CACAATGTAGATAATATATGGATCACTTTTGTACTTCATAAATATATTTA  900

seq1  ATTCTTACCTGCCAATTTAAAACAAAACAGCACTTATGTTTAATAAAGAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTACCTGCCAATTTAAAACAAAACAGCACTTATGTTTAATAAAGAC  950

seq1  TTTAATAGAATAACAGCACTTTTAAGAAGAAAAGTG-TTTTATTTACTGC  998
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTTAATAGAATAACAGCACTTTTAAGAAGAAAAGTGTTTTTATTTACTGC  1000

seq1  TT-AGCATAGCTTACAAG-AAACA-TTTTATAGTGCACACATGTAATAAC  1045
      || ||||||||||||||| ||||| |||||||||||||||||||||||||
seq2  TTAAGCATAGCTTACAAGAAAACATTTTTATAGTGCACACATGTAATAAC  1050

seq1  TGATAGTAGC-TCTG-ATA-TCTTC-ATTGAAATAAATTTAT-GATAA  1088
      |||||||||| |||| ||| ||||| || ||||||||||||| |||||
seq2  TGATAGTAGCTTCTGAATATTCTTCAATGGAAATAAATTTATGGATAA  1098


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