BAC Information

Click to search

BAC

Clone NameB6Ng01-309A02
Chromosome3 (Build37)
Map Location 90,018,670 - 90,168,903
singlet/doubletdoublet
Overlap geneRab13, Jtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b, Gatad2b
Upstream geneThbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra, Atp8b2, LOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l, Rps27
Downstream geneSlc27a3, Ints3, Npr1, LOC668141, Ilf2, Snapap, 2500003M10Rik, S100a1, S100a13, S100a14, S100a16, EG628324, S100a3, S100a4, S100a5, S100a6, S100a7a, S100a8, S100a9, LOC668165, LOC383949, Pglyrp4, LOC329706, EG545541, LOC635737, EG668174, LOC668179, LOC635756, 4930529C04Rik, 9130204L05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-309A02.bB6Ng01-309A02.g
ACCGA101352GA101353
length1,068291
definitionB6Ng01-309A02.b B6Ng01-309A02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,167,833 - 90,168,903)(90,018,670 - 90,018,959)
sequence
gaattcaaggttggctttgtctacagagttagttccagaacagccagggc
cacaaggaacattgtctcaaaaaacaaaaacaaaaacattttatttaaat
gttttatttgcatgtacatacatgtgctatgtatggtgctcttggaagtc
cacagggatgctgggaattgaacccaagtcctctataagagcaagcaatg
ttaactcatgagccatttctacaatcctttgttctaaagggatccgtttg
attgatagtttcagtcctaggtcccttgatagaataaagacgctatagca
cctagcattcctactcttctcttttccagcctcctgtacccagcagcaaa
cagtcacatgccatggagcactgtcttgctctgtaaaaacaaaacccaga
cagctacctcagctaacctttccctgccccacagtgacatcagaaggcag
gtttttgtgggaaggaaagtccatggcccagggaaccacacatattgtct
ctcctgtgctcacacaaaaataacactaggatcagtaacaagattccagc
aaggctgggctctgcctttctccatcagctcttctgatggtataaaatat
ggcagaagattgggagttggacagagtcctgactttttttctcgagacag
ggtttctctgtgtagccctggctgtcctggaactcactctgtagaccagg
ctgttctcagaaacccgcctgcctctgcctcctgagtgctggaattaaag
gcttgcgccactacgcccggccagtcctgacttttaagtattccagaaaa
ccaaacaagataccatcttgtttgggagtcacctaaaagttttgttagaa
ataaaacataaaacgtgggagccaaaatgactgatgctttatgttcaaag
gcaaatttgagtgaaaggtataagaatgttgacacagcaattctagggcc
tttctgggaattcccaatgttaaagtttggtatgtgtgatggttgtatat
cttggaccaaggaagttgcaccatctgacgtggtggcctgtggaatgggt
gtgtcactgtggggtggg
aagtgtctataaataaaataataaataaatagtccatgcttaaatgaatg
catgttgattttggattttggcaatatacatggcagagatatcttgggaa
atagattctaggtttaaaaatgaaattcatggccaggtgtggtggtgcac
gcctttaatcccagcacctgggaggcagaggcaggcggatttctgagttc
aagaccagcctggtctacaaagcgagttccgggacatccagggctacaca
gagaaaccctgtctcaaaaaaaaaaaaaaaaaataaaaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_90167833_90168903
seq2: B6Ng01-309A02.b_44_1111 (reverse)

seq1  CCCACACCCACAGTGACACACCCATTCCAACAAGGCCACACCTTCAGATG  50
      ||||| |||||||||||||||||||||||   |||||||  | |||||||
seq2  CCCAC-CCCACAGTGACACACCCATTCCA--CAGGCCACCACGTCAGATG  47

seq1  GTGCCAC-TCCCTGGTCCAAGGATATACAAACCATCACACATACCAAACT  99
      |||| || ||| |||||||| ||||||| |||||||||||||||||||||
seq2  GTGCAACTTCCTTGGTCCAA-GATATAC-AACCATCACACATACCAAACT  95

seq1  TTAACATTTGGAATTCCCAGAAAGG-CCTAGAATTGCTGTGTCAACATTC  148
      |||||||| |||||||||||||||| ||||||||||||||||||||||||
seq2  TTAACATTGGGAATTCCCAGAAAGGCCCTAGAATTGCTGTGTCAACATTC  145

seq1  TTATACCTTTCACTCAAATTTGCCTTTGAACATAAAGCATCAGTCATTTT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACCTTTCACTCAAATTTGCCTTTGAACATAAAGCATCAGTCATTTT  195

seq1  GGCTCCCACGTTTTATGTTTTATTTCTAACAAAACTTTTAGGTGACTCCC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCCACGTTTTATGTTTTATTTCTAACAAAACTTTTAGGTGACTCCC  245

seq1  AAACAAGATGGTATCTTGTTTGGTTTTCTGGAATACTTAAAAGTCAGGAC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGATGGTATCTTGTTTGGTTTTCTGGAATACTTAAAAGTCAGGAC  295

seq1  TGGCCGGGCGTAGTGGCGCAAGCCTTTAATTCCAGCACTCAGGAGGCAGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCGGGCGTAGTGGCGCAAGCCTTTAATTCCAGCACTCAGGAGGCAGA  345

seq1  GGCAGGCGGGTTTCTGAGAACAGCCTGGTCTACAGAGTGAGTTCCAGGAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGCGGGTTTCTGAGAACAGCCTGGTCTACAGAGTGAGTTCCAGGAC  395

seq1  AGCCAGGGCTACACAGAGAAACCCTGTCTCGAGAAAAAAAGTCAGGACTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGGCTACACAGAGAAACCCTGTCTCGAGAAAAAAAGTCAGGACTC  445

seq1  TGTCCAACTCCCAATCTTCTGCCATATTTTATACCATCAGAAGAGCTGAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAACTCCCAATCTTCTGCCATATTTTATACCATCAGAAGAGCTGAT  495

seq1  GGAGAAAGGCAGAGCCCAGCCTTGCTGGAATCTTGTTACTGATCCTAGTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAGGCAGAGCCCAGCCTTGCTGGAATCTTGTTACTGATCCTAGTG  545

seq1  TTATTTTTGTGTGAGCACAGGAGAGACAATATGTGTGGTTCCCTGGGCCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTGTGTGAGCACAGGAGAGACAATATGTGTGGTTCCCTGGGCCA  595

seq1  TGGACTTTCCTTCCCACAAAAACCTGCCTTCTGATGTCACTGTGGGGCAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTTTCCTTCCCACAAAAACCTGCCTTCTGATGTCACTGTGGGGCAG  645

seq1  GGAAAGGTTAGCTGAGGTAGCTGTCTGGGTTTTGTTTTTACAGAGCAAGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGTTAGCTGAGGTAGCTGTCTGGGTTTTGTTTTTACAGAGCAAGA  695

seq1  CAGTGCTCCATGGCATGTGACTGTTTGCTGCTGGGTACAGGAGGCTGGAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTCCATGGCATGTGACTGTTTGCTGCTGGGTACAGGAGGCTGGAA  745

seq1  AAGAGAAGAGTAGGAATGCTAGGTGCTATAGCGTCTTTATTCTATCAAGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAGAGTAGGAATGCTAGGTGCTATAGCGTCTTTATTCTATCAAGG  795

seq1  GACCTAGGACTGAAACTATCAATCAAACGGATCCCTTTAGAACAAAGGAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTAGGACTGAAACTATCAATCAAACGGATCCCTTTAGAACAAAGGAT  845

seq1  TGTAGAAATGGCTCATGAGTTAACATTGCTTGCTCTTATAGAGGACTTGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAAATGGCTCATGAGTTAACATTGCTTGCTCTTATAGAGGACTTGG  895

seq1  GTTCAATTCCCAGCATCCCTGTGGACTTCCAAGAGCACCATACATAGCAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAATTCCCAGCATCCCTGTGGACTTCCAAGAGCACCATACATAGCAC  945

seq1  ATGTATGTACATGCAAATAAAACATTTAAATAAAATGTTTTTGTTTTTGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGTACATGCAAATAAAACATTTAAATAAAATGTTTTTGTTTTTGT  995

seq1  TTTTTGAGACAATGTTCCTTGTGGCCCTGGCTGTTCTGGAACTAACTCTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGAGACAATGTTCCTTGTGGCCCTGGCTGTTCTGGAACTAACTCTG  1045

seq1  TAGACAAAGCCAACCTTGAATTC  1071
      |||||||||||||||||||||||
seq2  TAGACAAAGCCAACCTTGAATTC  1068

seq1: chr3_90018670_90018959
seq2: B6Ng01-309A02.g_69_358

seq1  AAGTGTCTATAAATAAAATAATAAATAAATAGTCCATGCTTAAATGAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTCTATAAATAAAATAATAAATAAATAGTCCATGCTTAAATGAATG  50

seq1  CATGTTGATTTTGGATTTTGGCAATATACATGGCAGAGATATCTTGGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTGATTTTGGATTTTGGCAATATACATGGCAGAGATATCTTGGGAA  100

seq1  ATAGATTCTAGGTTTAAAAATGAAATTCATGGCCAGGTGTGGTGGTGCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATTCTAGGTTTAAAAATGAAATTCATGGCCAGGTGTGGTGGTGCAC  150

seq1  GCCTTTAATCCCAGCACCTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTAATCCCAGCACCTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTC  200

seq1  AAGACCAGCCTGGTCTACAAAGCGAGTTCCGGGACAGCCAGGGCTACACA  250
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAGACCAGCCTGGTCTACAAAGCGAGTTCCGGGACATCCAGGGCTACACA  250

seq1  GAGAAACCCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAA  290
      ||||||||||||||||||||||||||||||||| ||||||
seq2  GAGAAACCCTGTCTCAAAAAAAAAAAAAAAAAATAAAAAA  290