BAC Information

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BAC

Clone NameB6Ng01-309A19
Chromosome3 (Build37)
Map Location 109,583,727 - 109,690,895
singlet/doubletdoublet
Overlap geneNtng1
Upstream gene4921525H12Rik, Stxbp3a, Fndc7, Prpf38b, 4921515J06Rik, B430201A12Rik, 4930443G12Rik, Slc25a24, Vav3
Downstream geneLOC100043181, LOC100043183, Prmt6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-309A19.bB6Ng01-309A19.g
ACCGA101386GA101387
length1,1211,144
definitionB6Ng01-309A19.b B6Ng01-309A19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,583,727 - 109,584,858)(109,689,633 - 109,690,895)
sequence
gaattcagcctggaacgaggcttctgacctaatactgtcattggttattg
tcccaccaagtcatgtaggacttcattgtctttaatcttctggtttggcc
tcataattatttctgattccaagagatgccattgctgacacatttgtcac
ctgcagggtggcagtgtgccgggattgaacatacattgtttcagcccctc
caaaaactttgcagtgattctccacccgcccagctccctctgctgtcatg
tacagtaattggcctaataaaaggcagaaacaagaatttattacaccttg
ggcagtacttgaaacagactttattttcaggaacagcagttatgtctact
tgctgctgtatattttgatatttcatttaaatacttagaatatattcaaa
gtcaaattgctaatcactcaatttccctgctgctgtcctggttccccagg
tggcctcttatgatactccatgtaaacactgtatttggaaggatacatag
atcggcatccctagagtcacatgatcaccataaatctgtgaaaatagcat
gacttaaaaataaaagtctcttagtgctctgccaacaggctttggcataa
tcttggcaatcacttagatatttctttctctctgtttttgtggttataat
tttttcccaggtggaaaatagtctcatattttgcagacgttgtccaagct
agtgaccatcaatccgtcttcctggttattaaagttgtcagctgactgtg
ttcagtccacacaaaaatcagtgacgtgactgggaaactgctgggtggtt
gctcctttcgtcttaagaaacggccatacaatttcctgataacatttctg
caggaatttttattctttaaatcttccagtgttaaagcaacaagaaaaaa
catttaaaatgtcctttggtggaatcttattacacttgctatatgtaaac
cgatattctttgatgccagcacgctcgttgcccttacagagaaatctctg
catgacgaaacgaacaaatcaagagaccaaaactcaacatcagtcagtct
ttgctgattcgaatagatacattacagattgtctgtaacataaatggcca
ataatacaaaagtctactatt
gaattcaatatgtagaccagtctgttttttaatgtactgcctctggaagt
aaaggcatgtgcaactacatctatccatacatagaagtttttaatgtgtt
tgtaggcatgatacctaaagcggaatttcccaaacaatttctgggttttc
tttgtcttggacacctcctatcctcttttgctgtttgtcaaattctgtcc
tgagtgcatgtgaaaattgttctctactcttccttcatgatcacaggtct
gtccatccctaactatctgagaaaagcctacctatccttaaataattata
gctgctgccaatttattcaagtttagaatatcctcaatcagaataacatg
ttagaccgaagaactgagtctacagctctgcaggggtacctgaagtccct
ggactagagagatgtgtaacctgttcttctacaccattctgctataatat
aaggggttcattaagcttctagttatatacattttctcctagttgtgagc
acatagttccctaaaaataagtcattaagcttagtagcatttcatggaaa
gcatgaggaacattgaaggactacacagaggttaaatgataagctttact
atgtgatgcaaatttcccagaaggctttgtctagtaacaatgtgaatgga
cttgtctatgaataccatgagaatctccccattcactgccacttctcaca
cagtggcttccctattgtttagctacagagacatcataaaacctctgtga
tatttccaatgtccccaacggccaacataaaaaggatttggaaattgcat
ttttataagggatattctcccttttatctggagatgatgagacattctta
tatgccctatccaatagaaaggtttcctcagctctctccattcctccttc
acgccatctttacaactccaaaatctagaatagttgataggcaacaagct
tagcctgacactctgctatacattttctccacataggagattaagaggcc
atactcgttctctctcacagactctactattctatgagcagtgtgaagaa
actatatgttttatcgccatattgttggggtgggtgttcaggaattcttc
gaaatgtacattccgctaaaccatcacctccaagaagttggcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_109583727_109584858
seq2: B6Ng01-309A19.b_45_1165

seq1  GAATTCAGCCTGGAACGAGGCTTCTGACCTAATACTGTCATTGGTTATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCCTGGAACGAGGCTTCTGACCTAATACTGTCATTGGTTATTG  50

seq1  TCCCACCAAGTCATGTAGGACTTCATTGTCTTTAATCTTCTGGTTTGGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACCAAGTCATGTAGGACTTCATTGTCTTTAATCTTCTGGTTTGGCC  100

seq1  TCATAATTATTTCTGATTCCAAGAGATGCCATTGCTGACACATTTGTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAATTATTTCTGATTCCAAGAGATGCCATTGCTGACACATTTGTCAC  150

seq1  CTGCAGGGTGGCAGTGTGCCGGGATTGAACATACATTGTTTCAGCCCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGGGTGGCAGTGTGCCGGGATTGAACATACATTGTTTCAGCCCCTC  200

seq1  CAAAAACTTTGCAGTGATTCTCCACCCGCCCAGCTCCCTCTGCTGTCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACTTTGCAGTGATTCTCCACCCGCCCAGCTCCCTCTGCTGTCATG  250

seq1  TACAGTAATTGGCCTAATAAAAGGCAGAAACAAGAATTTATTACACCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTAATTGGCCTAATAAAAGGCAGAAACAAGAATTTATTACACCTTG  300

seq1  GGCAGTACTTGAAACAGACTTTATTTTCAGGAACAGCAGTTATGTCTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTACTTGAAACAGACTTTATTTTCAGGAACAGCAGTTATGTCTACT  350

seq1  TGCTGCTGTATATTTTGATATTTCATTTAAATACTTAGAATATATTCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCTGTATATTTTGATATTTCATTTAAATACTTAGAATATATTCAAA  400

seq1  GTCAAATTGCTAATCACTCAATTTCCCTGCTGCTGTCCTGGTTCCCCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAATTGCTAATCACTCAATTTCCCTGCTGCTGTCCTGGTTCCCCAGG  450

seq1  TGGCCTCTTATGATACTCCATGTAAACACTGTATTTGGAAGGATACATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTCTTATGATACTCCATGTAAACACTGTATTTGGAAGGATACATAG  500

seq1  ATCGGCATCCCTAGAGTCACATGATCACCATAAATCTGTGAAAATAGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGGCATCCCTAGAGTCACATGATCACCATAAATCTGTGAAAATAGCAT  550

seq1  GACTTAAAAATAAAAGTCTCTTAGTGCTCTGCCAACAGGCTTTGGCATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAAAAATAAAAGTCTCTTAGTGCTCTGCCAACAGGCTTTGGCATAA  600

seq1  TCTTGGCAATCACTTAGATATTTCTTTCTCTCTGTTTTTGTGGTTATAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGCAATCACTTAGATATTTCTTTCTCTCTGTTTTTGTGGTTATAAT  650

seq1  TTTTTCCCAGGTGGAAAATAGTCTCATATTTTGCAGACGTTGTCCAAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCCAGGTGGAAAATAGTCTCATATTTTGCAGACGTTGTCCAAGCT  700

seq1  AGTGACCATCAATCCGTCTTCCTGGTTATTAAAGTTGTCAGCTGACTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACCATCAATCCGTCTTCCTGGTTATTAAAGTTGTCAGCTGACTGTG  750

seq1  TTCAGTCCACACAAAAATCAGTGACGTGACTGGGAAACTGCTGGGTGGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTCCACACAAAAATCAGTGACGTGACTGGGAAACTGCTGGGTGGTT  800

seq1  GCTCCTTTCGTCTTAAGAAACGGCCATACAATTTCCTGATAACATTTCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTTTCGTCTTAAGAAACGGCCATACAATTTCCTGATAACATTTCTG  850

seq1  CAGGAATTTTTATTCTTTAAATCTTCCAGTGTTAAAGCAACAAGAAAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAATTTTTATTCTTTAAATCTTCCAGTGTTAAAGCAACAAGAAAAAA  900

seq1  CATTTAAAATGTCCTTTGGTGGAATCTTATTACACTTGCTATATGTAAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAAAATGTCCTTTGGTGGAATCTTATTACACTTGCTATATGTAAAC  950

seq1  CGATATTCTTTGATGCCAGCACGCTCGTTGCCCTTACAGAGAAATCTCTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATATTCTTTGATGCCAGCACGCTCGTTGCCCTTACAGAGAAATCTCTG  1000

seq1  CATGACGAAACGAAACAAAACCAAAGAGGACCAAAAACTCAAACATCAGT  1050
      |||||||||||| |||||| |  |||| |||| ||||||| |||||||||
seq2  CATGACGAAACG-AACAAATC--AAGA-GACC-AAAACTC-AACATCAGT  1044

seq1  CAGTCTTTGCTGATTCGAATTAGATACATTAACAGATTGTCTGGTAACAT  1100
      ||||||||||||||||||| |||||||||| ||||||||||| |||||||
seq2  CAGTCTTTGCTGATTCGAA-TAGATACATT-ACAGATTGTCT-GTAACAT  1091

seq1  AAATTGGCAATAATACAAAAAATCTACATATT  1132
      |||| | ||||||||| |||| ||||| ||||
seq2  AAATGGCCAATAATAC-AAAAGTCTAC-TATT  1121

seq1: chr3_109689633_109690895
seq2: B6Ng01-309A19.g_63_1206 (reverse)

seq1  TGGCCAACTTCTCATCCATGATTCCTTCTCAGGGAAGCCCCAACTATGGA  50
                                                        
seq2  --------------------------------------------------  0

seq1  ATATAATCTAAAGGCAGTTATGGAGTAACATCCCCCCAAAAAGATGAGTT  100
                                                        
seq2  --------------------------------------------------  0

seq1  TATAAATTTTCTGGTTGGTCATGCAAACTCCTGTGTGTGTGTGTTTTGCG  150
                     |||     |||  || ||   |||   |||| |||
seq2  ---------------TGG----CCAACTTCTTGGAGGTGATGGTTTAGCG  31

seq1  G-ATGTACATTTCTAAGGA-TCCTGAACA-CCACCC--AC-ATATGGCGA  194
      | ||||||||||| ||| | ||||||||| ||||||  || |||||||||
seq2  GAATGTACATTTCGAAGAATTCCTGAACACCCACCCCAACAATATGGCGA  81

seq1  T-AAACATATAGTTTCTTCAACACTTGCTCATAGGAAATTAGTAGAGTCT  243
      | ||||||||||||||||| |||| |||||||||   | |||||||||||
seq2  TAAAACATATAGTTTCTTC-ACAC-TGCTCATAG---AATAGTAGAGTCT  126

seq1  GTGAGAGAGAACGAGTATGGCCTCTTAATCTCCTATTGTTGGAGAAAATG  293
      ||||||||||||||||||||||||||||||||||||   |||||||||||
seq2  GTGAGAGAGAACGAGTATGGCCTCTTAATCTCCTAT--GTGGAGAAAATG  174

seq1  TATAGCAGAGGTGTCAGGCTAAGCTTGTTGCCTATCAACTATTCTAGATT  343
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCAGA-GTGTCAGGCTAAGCTTGTTGCCTATCAACTATTCTAGATT  223

seq1  TTGGAGTTGTAAAGATGGCGTGAAGGAGGAATGGAGAGAGCTGAGGAAAC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGTTGTAAAGATGGCGTGAAGGAGGAATGGAGAGAGCTGAGGAAAC  273

seq1  C-TTCTATTGGATAGGGCATATAAGAATGTCTCATCATCTCCAGATAAAA  442
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTATTGGATAGGGCATATAAGAATGTCTCATCATCTCCAGATAAAA  323

seq1  GGGAGAATATCCCTTATAAAAATGCAATTTCCAAATCCTTTTTATGTTGG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAATATCCCTTATAAAAATGCAATTTCCAAATCCTTTTTATGTTGG  373

seq1  CCGTTGGGGACATTGGAAATATCACAGAGGTTTTATGATGTCTCTGTAGC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTGGGGACATTGGAAATATCACAGAGGTTTTATGATGTCTCTGTAGC  423

seq1  TAAACAATAGGGAAGCCACTGTGTGAGAAGTGGCAGTGAATGGGGAGATT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAATAGGGAAGCCACTGTGTGAGAAGTGGCAGTGAATGGGGAGATT  473

seq1  CTCATGGTATTCATAGACAAGTCCATTCACATTGTTACTAGACAAAGCCT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGGTATTCATAGACAAGTCCATTCACATTGTTACTAGACAAAGCCT  523

seq1  TCTGGGAAATTTGCATCACATAGTAAAGCTTATCATTTAACCTCTGTGTA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGAAATTTGCATCACATAGTAAAGCTTATCATTTAACCTCTGTGTA  573

seq1  GTCCTTCAATGTTCCTCATGCTTTCCATGAAATGCTACTAAGCTTAATGA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTCAATGTTCCTCATGCTTTCCATGAAATGCTACTAAGCTTAATGA  623

seq1  CTTATTTTTAGGGAACTATGTGCTCACAACTAGGAGAAAATGTATATAAC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTTTAGGGAACTATGTGCTCACAACTAGGAGAAAATGTATATAAC  673

seq1  TAGAAGCTTAATGAACCCCTTATATTATAGCAGAATGGTGTAGAAGAACA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGCTTAATGAACCCCTTATATTATAGCAGAATGGTGTAGAAGAACA  723

seq1  GGTTACACATCTCTCTAGTCCAGGGACTTCAGGTACCCCTGCAGAGCTGT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACACATCTCTCTAGTCCAGGGACTTCAGGTACCCCTGCAGAGCTGT  773

seq1  AGACTCAGTTCTTCGGTCTAACATGTTATTCTGATTGAGGATATTCTAAA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCAGTTCTTCGGTCTAACATGTTATTCTGATTGAGGATATTCTAAA  823

seq1  CTTGAATAAATTGGCAGCAGCTATAATTATTTAAGGATAGGTAGGCTTTT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAATAAATTGGCAGCAGCTATAATTATTTAAGGATAGGTAGGCTTTT  873

seq1  CTCAGATAGTTAGGGATGGACAGACCTGTGATCATGAAGGAAGAGTAGAG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGATAGTTAGGGATGGACAGACCTGTGATCATGAAGGAAGAGTAGAG  923

seq1  AACAATTTTCACATGCACTCAGGACAGAATTTGACAAACAGCAAAAGAGG  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTTTCACATGCACTCAGGACAGAATTTGACAAACAGCAAAAGAGG  973

seq1  ATAGGAGGTGTCCAAGACAAAGAAAACCCAGAAATTGTTTGGGAAATTCC  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAGGTGTCCAAGACAAAGAAAACCCAGAAATTGTTTGGGAAATTCC  1023

seq1  GCTTTAGGTATCATGCCTACAAACACATTAAAAACTTCTATGTATGGATA  1192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAGGTATCATGCCTACAAACACATTAAAAACTTCTATGTATGGATA  1073

seq1  GATGTAGTTGCACATGCCTTTACTTCCAGAGGCAGTACATTAAAAAACAG  1242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTAGTTGCACATGCCTTTACTTCCAGAGGCAGTACATTAAAAAACAG  1123

seq1  ACTGGTCTACATATTGAATTC  1263
      |||||||||||||||||||||
seq2  ACTGGTCTACATATTGAATTC  1144