BAC Information

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BAC

Clone NameB6Ng01-309B11
Chromosome3 (Build37)
Map Location 5,237,431 - 5,370,941
singlet/doubletdoublet
Overlap geneZfhx4
Upstream geneLOC620283
Downstream genePxmp3, EG620382, EG667759, LOC100041165, LOC100041193, EG620570, LOC100041214
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-309B11.bB6Ng01-309B11.g
ACCGA101418GA101419
length1,1051,105
definitionB6Ng01-309B11.b B6Ng01-309B11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,237,431 - 5,238,547)(5,369,822 - 5,370,941)
sequence
gaattcaacaataaggaatttaagcctcaatgtggcattagcaagcaaag
aaaagaagctcttggtgtctgcataataccactttgatggattttttcat
cagttctctgtacgtggcaacaaataaacaagtataattacacttgtgaa
ggcctattcactgctttgtcaggattagatatatgtgccgttttcacact
gcgcctctcttttgtctttgcctaactcactatgacatattgatagagga
tttggaatggggaaaaggccacagcagagacagtgatgaccttttggaaa
cttgatataattcaagaatttttatttattttctttctttcttttctttt
tcccttttcttttctctttctttctctttcctttctttctttttttattt
ttgtaaagtttttaccaaattcacttataaacagacaacttttaacttat
ttcagatcgagtaaataaagacccagagttttagcagagagcagagggca
gaggagaataaaaacaatggaggagggagtgccctggtcttctttcccag
cacttagcagagtggccaacctagcattctttccccattattctggcctc
ttgatcagatcgcgttctttttaatcatttcacaaacactgtctcactgg
accatagaagagggctgggcagcctcaattaaaaagcagaggcaaaactg
gcctctgattttgggttctaatgggacctctgagtgctgactacaaaggc
attttcctgcagaaacactcccctttattagaagggctcctcttaggtgg
gttttgccgtttagcagacagagcagagtttaggcagcagtgactacaga
ggaaagcaaagctgaagccaagcaagggaggtggggggcttttctgcata
ttttctgctgcttctgaaagcgatttgacaggatcaaagtcactgatctt
acaatttcctgagatagcggatagcaaaaaatttgtatacatactctaag
cagaccagcaggtatgtattgctctgatttagcataaagttagacagtat
ctctaagatttctgagactttttaaattttttaaaatggatatttgcagt
agaca

gaattcattagtaattactgtttttctactttgtgacttacatacaacca
tgagagaaaaccttcagattaactagagcaattttgtttttccataatta
aaattattaaattaattttccattaacacgtgatttagaaaagcttccta
gattacatattttcataattgataactttctgcatataaccatattagca
gaggttgactactcatatagtaagtattgtacacacagcatgtgtctagc
aggaagatgaatctggagggaaaaaggtagaatagcttatgaggaagatc
agaaagacctcagtggagccaagagtgaaaagtgtaatttggggacaggc
tatgaatttttgagtcaacactggggaatagccatgaaatactcatttaa
taagtcactttgtcattcactcattagtgagcaagcagatggatgaggct
tggcacattgctttctttggactatgttagcagttggaaaataaattgtt
tctgtaaaacaaactatttctttccctcttgtctaagtgtccgtgttggc
aaggggttcctagatcttgggaaaatgaaatttttaaacatggtgctgaa
ttcatattttcatcttgagattgctacttgacaatgaaagatacaggcag
aagttttgttataaataaataacaataaaatgacttctgcttttgaatat
accactttccagaagagattatggagaaaggctaaagaccaattttatta
gagagaatagggatacaaagacattcaagactggagtaagagaaatgacg
aggttattgggtatatgcataggcatatacaggaagatgtttaataaaac
ttgaagtggacagaaataaattttgtaagagaagcctgaataaagcatta
ataaatgacatctatgaataagtgaccgagcacaggaagaatgtctacag
tgtgcagatgacacagaggctagatcaaacacacacacacacacacacac
acacacacacatcacacagagtaatgacctctagataaagagggttgcta
agaagatgtgacaagaccaaggaggagcacatgtcctagagaaccagctt
accat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_5237431_5238547
seq2: B6Ng01-309B11.b_45_1149

seq1  GAATTCAACAATAAGGAATTTAAGCCTCAATGTGGCATTAGCAAGCAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACAATAAGGAATTTAAGCCTCAATGTGGCATTAGCAAGCAAAG  50

seq1  AAAAGAAGCTCTTGGTGTCTGCATAATACCACTTTGATGGATTTTTTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAGCTCTTGGTGTCTGCATAATACCACTTTGATGGATTTTTTCAT  100

seq1  CAGTTCTCTGTACGTGGCAACAAATAAACAAGTATAATTACACTTGTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTCTGTACGTGGCAACAAATAAACAAGTATAATTACACTTGTGAA  150

seq1  GGCCTATTCACTGCTTTGTCAGGATTAGATATATGTGCCGTTTTCACACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTATTCACTGCTTTGTCAGGATTAGATATATGTGCCGTTTTCACACT  200

seq1  GCGCCTCTCTTTTGTCTTTGCCTAACTCACTATGACATATTGATAGAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCTCTCTTTTGTCTTTGCCTAACTCACTATGACATATTGATAGAGGA  250

seq1  TTTGGAATGGGGAAAAGGCCACAGCAGAGACAGTGATGACCTTTTGGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAATGGGGAAAAGGCCACAGCAGAGACAGTGATGACCTTTTGGAAA  300

seq1  CTTGATATAATTCAAGAATTTTTATTTATTTTCTTTCTTTCTTTTCTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATATAATTCAAGAATTTTTATTTATTTTCTTTCTTTCTTTTCTTTT  350

seq1  TCCCTTTTCTTTTCTCTTTCTTTCTCTTTCCTTTCTTTCTTTTTTTATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTTCTTTTCTCTTTCTTTCTCTTTCCTTTCTTTCTTTTTTTATTT  400

seq1  TTGTAAAGTTTTTACCAAATTCACTTATAAACAGACAACTTTTAACTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAAGTTTTTACCAAATTCACTTATAAACAGACAACTTTTAACTTAT  450

seq1  TTCAGATCGAGTAAATAAAGACCCAGAGTTTTAGCAGAGAGCAGAGGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATCGAGTAAATAAAGACCCAGAGTTTTAGCAGAGAGCAGAGGGCA  500

seq1  GAGGAGAATAAAAACAATGGAGGAGGGAGTGCCCTGGTCTTCTTTCCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGAATAAAAACAATGGAGGAGGGAGTGCCCTGGTCTTCTTTCCCAG  550

seq1  CACTTAGCAGAGTGGCCAACCTAGCATTCTTTCCCCATTATTCTGGCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAGCAGAGTGGCCAACCTAGCATTCTTTCCCCATTATTCTGGCCTC  600

seq1  TTGATCAGATCGCGTTCTTTTTAATCATTTCACAAACACTGTCTCACTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCAGATCGCGTTCTTTTTAATCATTTCACAAACACTGTCTCACTGG  650

seq1  ACCATAGAAGAGGGCTGGGCAGCCTCAATTAAAAAGCAGAGGCAAAACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATAGAAGAGGGCTGGGCAGCCTCAATTAAAAAGCAGAGGCAAAACTG  700

seq1  GCCTCTGATTTTGGGTTCTAATGGGACCTCTGAGTGCTGACTACAAAGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGATTTTGGGTTCTAATGGGACCTCTGAGTGCTGACTACAAAGGC  750

seq1  ATTTTCCTGCAGAAACACTCCCCTTTATTAGAAGGGCTCCTCTTAGGTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCTGCAGAAACACTCCCCTTTATTAGAAGGGCTCCTCTTAGGTGG  800

seq1  GTTTTGCCGTTTAGCAGACAGAGCAGAGTTTAGGCAGCAGTGACTACAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGCCGTTTAGCAGACAGAGCAGAGTTTAGGCAGCAGTGACTACAGA  850

seq1  GGAAAGCAAAGCTGAAGCCAAGCAAGGGAGGTGGGGGGCTTTTCTGCATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGCAAAGCTGAAGCCAAGCAAGGGAGGTGGGGGGCTTTTCTGCATA  900

seq1  TTTTCTGCTGCTTCTGAAAAGCGATTTGACAGGATCAAAGTCACTGATCT  950
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTTTCTGCTGCTTCTG-AAAGCGATTTGACAGGATCAAAGTCACTGATCT  949

seq1  TACAAATTCCTGAGAATAGCGGATAGCAAAAAATTTGTATACATACTCTA  1000
      ||||| |||||||| |||||||||||||||||||||||||||||||||||
seq2  TACAATTTCCTGAG-ATAGCGGATAGCAAAAAATTTGTATACATACTCTA  998

seq1  AGCAGACCAGCAGGTATGTATTGCTCTGAATTTAGCATAAAAGTTAGAAC  1050
      |||||||||||||||||||||||||||| ||||||||| |||||||| ||
seq2  AGCAGACCAGCAGGTATGTATTGCTCTG-ATTTAGCAT-AAAGTTAG-AC  1045

seq1  AGGTATCTCTAAGGAATTTCCTGAAGACTTTTTAAATTTTTTAAAATGGG  1100
      | |||||||||||  |||| ||| ||||||||||||||||||||||| ||
seq2  A-GTATCTCTAAG--ATTT-CTG-AGACTTTTTAAATTTTTTAAAAT-GG  1089

seq1  ATATTTGCCAGTAGACA  1117
      ||||||| |||||||||
seq2  ATATTTG-CAGTAGACA  1105


seq1: chr3_5369822_5370941
seq2: B6Ng01-309B11.g_67_1171 (reverse)

seq1  ATGGTTAGCTGTGTTCTCTAGGGACATGTGCTTCCCTCTTTGGTCTTTGT  50
      ||||| ||||| |||||||| |||||||||||  |||| |||||| ||||
seq2  ATGGTAAGCTG-GTTCTCTA-GGACATGTGCT--CCTCCTTGGTC-TTGT  45

seq1  CAACATC-TCTTAGC-ACCCTCTTTATCTTCCAG-GGTCATTTACTTCTT  97
      | ||||| ||||||| |||||||||||||   || ||||| |||| ||| 
seq2  C-ACATCTTCTTAGCAACCCTCTTTATCT---AGAGGTCA-TTAC-TCT-  88

seq1  GGTGTG-TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTGAATCTT  146
       ||||| |||||||||||||||||||||||||||||||||||   ||| |
seq2  -GTGTGATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTT--GATC-T  134

seq1  AGCCCTCTGTTGTCATCTTGCACACTGTAGACATTCTTCCTGTGCTCGGT  196
      || |||||| ||||||| ||||||||||||||||||||||||||||||||
seq2  AG-CCTCTG-TGTCATC-TGCACACTGTAGACATTCTTCCTGTGCTCGGT  181

seq1  CACTTATTCATAGATGTCATTTATTAATGCTTTATTCAGGCTTCTCTTAC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTATTCATAGATGTCATTTATTAATGCTTTATTCAGGCTTCTCTTAC  231

seq1  AAAATTTATTTCTGTCCACTTCAAGTTTTATTAAACATCTTCCTGTATAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTATTTCTGTCCACTTCAAGTTTTATTAAACATCTTCCTGTATAT  281

seq1  GCCTATGCATATACCCAATAACCTCGTCATTTCTCTTACTCCAGTCTTGA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATGCATATACCCAATAACCTCGTCATTTCTCTTACTCCAGTCTTGA  331

seq1  ATGTCTTTGTATCCCTATTCTCTCTAATAAAATTGGTCTTTAGCCTTTCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTTGTATCCCTATTCTCTCTAATAAAATTGGTCTTTAGCCTTTCT  381

seq1  CCATAATCTCTTCTGGAAAGTGGTATATTCAAAAGCAGAAGTCATTTTAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAATCTCTTCTGGAAAGTGGTATATTCAAAAGCAGAAGTCATTTTAT  431

seq1  TGTTATTTATTTATAACAAAACTTCTGCCTGTATCTTTCATTGTCAAGTA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTTATTTATAACAAAACTTCTGCCTGTATCTTTCATTGTCAAGTA  481

seq1  GCAATCTCAAGATGAAAATATGAATTCAGCACCATGTTTAAAAATTTCAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCTCAAGATGAAAATATGAATTCAGCACCATGTTTAAAAATTTCAT  531

seq1  TTTCCCAAGATCTAGGAACCCCTTGCCAACACGGACACTTAGACAAGAGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCAAGATCTAGGAACCCCTTGCCAACACGGACACTTAGACAAGAGG  581

seq1  GAAAGAAATAGTTTGTTTTACAGAAACAATTTATTTTCCAACTGCTAACA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAATAGTTTGTTTTACAGAAACAATTTATTTTCCAACTGCTAACA  631

seq1  TAGTCCAAAGAAAGCAATGTGCCAAGCCTCATCCATCTGCTTGCTCACTA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCAAAGAAAGCAATGTGCCAAGCCTCATCCATCTGCTTGCTCACTA  681

seq1  ATGAGTGAATGACAAAGTGACTTATTAAATGAGTATTTCATGGCTATTCC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTGAATGACAAAGTGACTTATTAAATGAGTATTTCATGGCTATTCC  731

seq1  CCAGTGTTGACTCAAAAATTCATAGCCTGTCCCCAAATTACACTTTTCAC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGTTGACTCAAAAATTCATAGCCTGTCCCCAAATTACACTTTTCAC  781

seq1  TCTTGGCTCCACTGAGGTCTTTCTGATCTTCCTCATAAGCTATTCTACCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGCTCCACTGAGGTCTTTCTGATCTTCCTCATAAGCTATTCTACCT  831

seq1  TTTTCCCTCCAGATTCATCTTCCTGCTAGACACATGCTGTGTGTACAATA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCTCCAGATTCATCTTCCTGCTAGACACATGCTGTGTGTACAATA  881

seq1  CTTACTATACGAGTAGTCAACCTCTGCTAATATGGTTATATGCAGAAAGT  946
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTATATGAGTAGTCAACCTCTGCTAATATGGTTATATGCAGAAAGT  931

seq1  TATCAATTATGAAAATATGTAATCTAGGAAGCTTTTCTAAATCACGTGTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAATTATGAAAATATGTAATCTAGGAAGCTTTTCTAAATCACGTGTT  981

seq1  AATGGAAAATTAATTTAATAATTTTAATTATGGAAAAACAAAATTGCTCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAAAATTAATTTAATAATTTTAATTATGGAAAAACAAAATTGCTCT  1031

seq1  AGTTAATCTGAAGGTTTTCTCTCATGGTTGTATGTAAGTCACAAAGTAGA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAATCTGAAGGTTTTCTCTCATGGTTGTATGTAAGTCACAAAGTAGA  1081

seq1  AAAACAGTAATTACTAATGAATTC  1120
      ||||||||||||||||||||||||
seq2  AAAACAGTAATTACTAATGAATTC  1105


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