BAC Information

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BAC

Clone NameB6Ng01-309D19
Chromosome3 (Build37)
Map Location 27,409,653 - 27,569,144
singlet/doubletdoublet
Overlap geneFndc3b
Upstream geneSpata16, LOC665258, Ect2, Aadacl1, LOC100040527, Tnfsf10, Ghsr
Downstream geneE030011K20Rik, Pld1, Tnik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-309D19.bB6Ng01-309D19.g
ACCGA101528GA101529
length1,1131,136
definitionB6Ng01-309D19.b B6Ng01-309D19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,568,025 - 27,569,144)(27,409,653 - 27,410,792)
sequence
gaattccactgggctgtcgtaattctttctgaaacctaatacggtatgag
atatttcatcatatgtgtatttctggtgatgtgcttgaatgataaaatac
ataagaaattaggcatgctattagggctgggaaattgacaaatgtgcaag
aagatgattctgaataaatatatgatcctttaacttgacttgagccttcg
gtttaattttgtctcgtacgagatctctgtggcttctggctgtttcacag
atacctggaagaggtagaactccagcatcatgagaaagaaccttatggct
tgggttaccgaatggggtacacatcagcatactggttagtcctagctctg
gtttccatggggtgatagagagttatccaggtggctttgtctcgcctagc
agtgggtttgtgttgctgcccagcaatggtgaacttgggaactagtgtgc
ttttataacatgcagtaagtagggaagcttgctgcttattctaggggcac
ctgtgcatgcaccatgcacatgtatgtgcacacacacacacatgcacaca
atgtaataaaaacattttaaaagagaaagagatgagcaagtaaaatagta
ctagcaacttcataggtaagtgagacagattgacgcagaacttgttaagt
gctgaataatctggagactgacagaagaaaaatgcaaagacattagtttg
atttctcccagaaattgacattatcttgacttcaggcggtagccacatta
cactaaaattgaacaaacagaaacccgggggtacacacatcatgtttgga
tagtactaaatccatgcgtctttttgtgaagttaaaacaggagtagctct
ttggatgcacacatttggtggacgctgtctctcaagcattatgatctttt
atttttttaaactacggaagttgttcatagtcttttaaaactattttcag
attagaggtgtgtgtgtgtgaggtgggcctggccgtggcttgggagggtc
agttatctgccaaggctttaggacagctagaggtggctagtgcgtgctga
agtagagcagagtctgaactttactatgaagcactccagttatcttctca
tgagccatttttt

gaattcaggagagataggccctttcttttctggagaaagttttgagacaa
agtcataccagaaactttcacattatcctgcccctaagcagatgggctcc
tttctgcaaaagctgcaccagtgtggaatcagaggcgaggtctgggtctt
taatgagaagctggagaacaggagagtaccagagagtcttcggaacctca
cataaactctgcgcatcctgctcaagggtttgatgccaagtaaattagat
cctgcctaaatattagaggagtctatttgcatttctgtcaaattccccaa
gaaagaaacccatgttgtcattgcatgggctattattcaacatggaacca
cacagaagcaactaggcatttctaactacatcaaactgagcatctaagac
aaaaatcttagagaactggataaaggtctcaggttaacttgcatgcctgg
tgggctaactctagcaccgggctctgcttccctgtgcagggctgcactct
tctctagtgagctgagtcagcccactgccagatgcagctcttttatttgg
gaagaggctaagctccatgactgtccagccatgcacttaggacaggaagg
gagctgcttggatgcagggcagaacttctcccagagttctgtcagaggtt
atgcagcgctttccacagcggcatctagaaccttccctcaagtgtgtttt
cattaagacgtggcagggcacggcgaaaggttttcagttaacttagagct
tttgcaagactgagtgaggatggatgggcagaatccacagtgtacagttc
tttagtaaaaagtccaagagagatttccaataattccattatttacacag
caaaatgtgaagtccttcatagcagccttttccttaattatgtttcatat
aactaattaatctgggaataagagtatgcactgaagccaaggcagtggtg
gcgcacacctttaatcccagtacttgagagcagaggcatgcggattgctg
agttcgagccagcaggcagccaggctaaacagaagaaaccttgttctcag
agactaccagactagcatcgagtctgctgggtggaaatacacatgatgct
ccagccctcctgatgttgtatccagaggtgagatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_27568025_27569144
seq2: B6Ng01-309D19.b_45_1157 (reverse)

seq1  AAAAAATGCCTTCATGAGAA---TACTGGAGTGCTTTCATAGTAAAG-TC  46
      |||||||| | |||||||||    |||||||||| |||||||||||| ||
seq2  AAAAAATGGC-TCATGAGAAGATAACTGGAGTGC-TTCATAGTAAAGTTC  48

seq1  AGACTCTGCCTCTTAACTCTCAGCACGCACTGGGCCACCTTCTTAGCTGT  96
      |||||||| ||||  ||| ||||||||||||  |||||||   |||||||
seq2  AGACTCTG-CTCT--ACT-TCAGCACGCACT-AGCCACCT--CTAGCTGT  91

seq1  CCTAAAGCCTTTGCAGATAACTGACCCTTCCCAAGCCACGGCCA-GCCCA  145
      ||||||||||| ||||||||||||||| |||||||||||||||| |||||
seq2  CCTAAAGCCTTGGCAGATAACTGACCC-TCCCAAGCCACGGCCAGGCCCA  140

seq1  CCTCACACACACACACCTCTAATCTGAAAATAGTTTTTAAAAAGACTATG  195
      |||||||||||||||||||||||||||||||||||||  |||||||||||
seq2  CCTCACACACACACACCTCTAATCTGAAAATAGTTTT--AAAAGACTATG  188

seq1  AACAACTTCCGTAGTTTAAAAAAATAAAAGATCATAATGCTTGAGAGACA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACTTCCGTAGTTTAAAAAAATAAAAGATCATAATGCTTGAGAGACA  238

seq1  GCGTCCACCAAATGTGTGCATCCAAAGAGCTACTCCTGTTTTAACTTCAC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTCCACCAAATGTGTGCATCCAAAGAGCTACTCCTGTTTTAACTTCAC  288

seq1  AAAAAGACGCATGGATTTAGTACTATCCAAACATGATGTGTGTACCCCCG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGACGCATGGATTTAGTACTATCCAAACATGATGTGTGTACCCCCG  338

seq1  GGTTTCTGTTTGTTCAATTTTAGTGTAATGTGGCTACCGCCTGAAGTCAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTGTTTGTTCAATTTTAGTGTAATGTGGCTACCGCCTGAAGTCAA  388

seq1  GATAATGTCAATTTCTGGGAGAAATCAAACTAATGTCTTTGCATTTTTCT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATGTCAATTTCTGGGAGAAATCAAACTAATGTCTTTGCATTTTTCT  438

seq1  TCTGTCAGTCTCCAGATTATTCAGCACTTAACAAGTTCTGCGTCAATCTG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCAGTCTCCAGATTATTCAGCACTTAACAAGTTCTGCGTCAATCTG  488

seq1  TCTCACTTACCTATGAAGTTGCTAGTACTATTTTACTTGCTCATCTCTTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACTTACCTATGAAGTTGCTAGTACTATTTTACTTGCTCATCTCTTT  538

seq1  CTCTTTTAAAATGTTTTTATTACATTGTGTGCATGTGTGTGTGTGTGCAC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTAAAATGTTTTTATTACATTGTGTGCATGTGTGTGTGTGTGCAC  588

seq1  ATACATGTGCATGGTGCATGCACAGGTGCCCCTAGAATAAGCAGCAAGCT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATGTGCATGGTGCATGCACAGGTGCCCCTAGAATAAGCAGCAAGCT  638

seq1  TCCCTACTTACTGCATGTTATAAAAGCACACTAGTTCCCAAGTTCACCAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTACTTACTGCATGTTATAAAAGCACACTAGTTCCCAAGTTCACCAT  688

seq1  TGCTGGGCAGCAACACAAACCCACTGCTAGGCGAGACAAAGCCACCTGGA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGCAGCAACACAAACCCACTGCTAGGCGAGACAAAGCCACCTGGA  738

seq1  TAACTCTCTATCACCCCATGGAAACCAGAGCTAGGACTAACCAGTATGCT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCTCTATCACCCCATGGAAACCAGAGCTAGGACTAACCAGTATGCT  788

seq1  GATGTGTACCCCATTCGGTAACCCAAGCCATAAGGTTCTTTCTCATGATG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGTACCCCATTCGGTAACCCAAGCCATAAGGTTCTTTCTCATGATG  838

seq1  CTGGAGTTCTACCTCTTCCAGGTATCTGTGAAACAGCCAGAAGCCACAGA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGTTCTACCTCTTCCAGGTATCTGTGAAACAGCCAGAAGCCACAGA  888

seq1  GATCTCGTACGAGACAAAATTAAACCGAAGGCTCAAGTCAAGTTAAAGGA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCGTACGAGACAAAATTAAACCGAAGGCTCAAGTCAAGTTAAAGGA  938

seq1  TCATATATTTATTCAGAATCATCTTCTTGCACATTTGTCAATTTCCCAGC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATATTTATTCAGAATCATCTTCTTGCACATTTGTCAATTTCCCAGC  988

seq1  CCTAATAGCATGCCTAATTTCTTATGTATTTTATCATTCAAGCACATCAC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATAGCATGCCTAATTTCTTATGTATTTTATCATTCAAGCACATCAC  1038

seq1  CAGAAATACACATATGATGAAATATCTCATACCGTATTAGGTTTCAGAAA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATACACATATGATGAAATATCTCATACCGTATTAGGTTTCAGAAA  1088

seq1  GAATTACGACAGCCCAGTGGAATTC  1120
      |||||||||||||||||||||||||
seq2  GAATTACGACAGCCCAGTGGAATTC  1113


seq1: chr3_27409653_27410792
seq2: B6Ng01-309D19.g_65_1200

seq1  GAATTCAGGAGAGATAGGCCCTTTCTTTTCTGGAGAAAGTTTTGAGACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGAGAGATAGGCCCTTTCTTTTCTGGAGAAAGTTTTGAGACAA  50

seq1  AGTCATACCAGAAACTTTCACATTATCCTGCCCCTAAGCAGATGGGCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATACCAGAAACTTTCACATTATCCTGCCCCTAAGCAGATGGGCTCC  100

seq1  TTTCTGCAAAAGCTGCACCAGTGTGGAATCAGAGGCGAGGTCTGGGTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCAAAAGCTGCACCAGTGTGGAATCAGAGGCGAGGTCTGGGTCTT  150

seq1  TAATGAGAAGCTGGAGAACAGGAGAGTACCAGAGAGTCTTCGGAACCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAGAAGCTGGAGAACAGGAGAGTACCAGAGAGTCTTCGGAACCTCA  200

seq1  CATAAACTCTGCGCATCCTGCTCAAGGGTTTGATGCCAAGTAAATTAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAACTCTGCGCATCCTGCTCAAGGGTTTGATGCCAAGTAAATTAGAT  250

seq1  CCTGCCTAAATATTAGAGGAGTCTATTTGCATTTCTGTCAAATTCCCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTAAATATTAGAGGAGTCTATTTGCATTTCTGTCAAATTCCCCAA  300

seq1  GAAAGAAACCCATGTTGTCATTGCATGGGCTATTATTCAACATGGAACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAACCCATGTTGTCATTGCATGGGCTATTATTCAACATGGAACCA  350

seq1  CACAGAAGCAACTAGGCATTTCTAACTACATCAAACTGAGCATCTAAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAGCAACTAGGCATTTCTAACTACATCAAACTGAGCATCTAAGAC  400

seq1  AAAAATCTTAGAGAACTGGATAAAGGTCTCAGGTTAACTTGCATGCCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCTTAGAGAACTGGATAAAGGTCTCAGGTTAACTTGCATGCCTGG  450

seq1  TGGGCTAACTCTAGCACCGGGCTCTGCTTCCCTGTGCAGGGCTGCACTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTAACTCTAGCACCGGGCTCTGCTTCCCTGTGCAGGGCTGCACTCT  500

seq1  TCTCTAGTGAGCTGAGTCAGCCCACTGCCAGATGCAGCTCTTTTATTTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAGTGAGCTGAGTCAGCCCACTGCCAGATGCAGCTCTTTTATTTGG  550

seq1  GAAGAGGCTAAGCTCCATGACTGTCCAGCCATGCACTTAGGACAGGAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGCTAAGCTCCATGACTGTCCAGCCATGCACTTAGGACAGGAAGG  600

seq1  GAGCTGCTTGGATGCAGGGCAGAACTTCTCCCAGAGTTCTGTCAGAGGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGCTTGGATGCAGGGCAGAACTTCTCCCAGAGTTCTGTCAGAGGTT  650

seq1  ATGCAGCGCTTTCCACAGCGGCATCTAGAACCTTCCCTCAAGTGTGTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGCGCTTTCCACAGCGGCATCTAGAACCTTCCCTCAAGTGTGTTTT  700

seq1  CATTAAGACGTGGCAGGACACGGCGAAAGGTTTTCAGTTAACTTAGAGCT  750
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CATTAAGACGTGGCAGGGCACGGCGAAAGGTTTTCAGTTAACTTAGAGCT  750

seq1  TTTGCAAGACTGAGTGAGGATGGATGGGCAGAATCCACAGTGTACAGTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAAGACTGAGTGAGGATGGATGGGCAGAATCCACAGTGTACAGTTC  800

seq1  TTTAGTAAAAAGTCCAAGAGAGATTTCCAATAATTCCATTATTTACACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTAAAAAGTCCAAGAGAGATTTCCAATAATTCCATTATTTACACAG  850

seq1  CAAAATGTGAAGTCCTTCATAGCAGCC-TTTCCTTAATTATGTTTCATAT  899
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CAAAATGTGAAGTCCTTCATAGCAGCCTTTTCCTTAATTATGTTTCATAT  900

seq1  AACTAATTAATCTGGG-ATAAGAGTATGCACTGAAGCC-AGGCAGTGGTG  947
      |||||||||||||||| ||||||||||||||||||||| |||||||||||
seq2  AACTAATTAATCTGGGAATAAGAGTATGCACTGAAGCCAAGGCAGTGGTG  950

seq1  GCGCACACCTTTAATCCCAGTACTTGAGAGGCAGAGGCATGCGGATTGCT  997
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GCGCACACCTTTAATCCCAGTACTTGAGA-GCAGAGGCATGCGGATTGCT  999

seq1  GAGTTCGAGGCCAGCCAGGCCAGCCAGGGCTACACAG-AGAAACCCTG-T  1045
      |||||||| ||||| |||| |||||| ||||| |||| ||||||| || |
seq2  GAGTTCGA-GCCAG-CAGG-CAGCCA-GGCTAAACAGAAGAAACCTTGTT  1045

seq1  CTCAAGAAAAAACAAACAAGACTAGGCATCGAGTCTGCTGG--TGAAATA  1093
      ||| ||| |      || |||||| ||||||||||||||||   ||||||
seq2  CTC-AGAGA----CTACCAGACTA-GCATCGAGTCTGCTGGGTGGAAATA  1089

seq1  CACATGGATGCT-CAGCC--TCTGATGTTGGAATCTCAGAGGTGAGATCT  1140
      ||||| |||||| |||||   |||||||| | ||| ||||||||||||||
seq2  CACAT-GATGCTCCAGCCCTCCTGATGTT-GTATC-CAGAGGTGAGATCT  1136


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