BAC Information

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BAC

Clone NameB6Ng01-309E11
Chromosome3 (Build37)X (Build37)
Map Location 147,231,513 - 147,231,99788,560,769 - 88,563,786
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneDnase2b, Uox, 4930503B20Rik, Gm1652, LOC670100, Prkacb, LOC100040540, Ttll7, Ppia-ps3_1528.1
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-309E11.bB6Ng01-309E11.g
ACCGA101560GA101561
length3191,094
definitionB6Ng01-309E11.b B6Ng01-309E11.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(147,231,513 - 147,231,997)(88,560,769 - 88,563,786)
sequence
ctctacattttagcattgctcttttccttttctattcatatatatatata
tatatatatatatatatatatatatatatatatatatatatgtgtgtgtg
tgtgtgtgagagagagagaaagtagagggattgcgcgggcgcgcgcgcga
gagcgagtggggggggggggggcgcatgtgtgagagcgatatatacatac
acatatatatatatatatatatacacagatatatatacatatagaaatat
agacatatatatatagatatatatacggatatatctcgggatgaatatat
attgtatatatatatattt
gaattcaccccatttcgagtgtgctagaaaggtgtgtgagagcacacggt
ttcacacctgatgggctttagtgggtctgtctcaacaggctccatcccta
ggtggaagcctaactctgttgtatggtcaaaatctccgcccaagtacggt
agtctagtggttctatctacataggccttgcccactagcgatcaatgtgg
actaagattctttgtacaggcatagttcccacccttacatggtcactgtg
gtgggttcaattagacagaactctgtccttttcgagggggctaataggat
ttgtgagcgcaccaggctcctccactgtatggtagccttagtgggtctgt
ctctacaggctccgcccttttcccggaattcttactctgttgtatgttca
aaagtttccacccatgtacggtggccttagtggatatgtcttgacaggct
ctgcccttgtccggaagtctaactatgatgtataggcaaaagtctccgcc
caagtatggtggccttagtgggtctaccaacaggtaccttccttaagagc
tcctgaagtggacatattaggtttgtaagggtcctgtctatttgtaccca
ccatttcgaccatgtaagtttggtgaactatgcctgtacaaacaatacac
ccctgtatagtggatttggttggattttattcactggaatctccccattt
tgcgtgtgctagaaaggtgtgtgagagcacaaggtttcacacctgatggg
ctttaatggtgtctgtctccacaggctccgtccccatcctgaagcctaaa
atctgttgtatggtcaagtctccgcccaagtacggtagtctagtggttcc
atctacataggcccttgccccatagcgatcaatgtggactaagattcttt
tgtacaggcataagttccccacccattacatgggtcactggtggtgggtt
caaatagacagaaacttctgtcctttcgaggtggtaataggatttgttag
cgcaccaggcttcttccacctgtatggtagccctaagtggatctgttctc
ttacagggtctcccggccctttttcctgtaatctaactctgttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_147231513_147231997
seq2: B6Ng01-309E11.b_116_369 (reverse)

seq1  AAATATATATATATCTCACACACACACACACATATATATATATCTCACAC  50
                                   | ||||||||||||       
seq2  -----------------------------AAATATATATATAT-------  14

seq1  ACACACATATATATATATATCACACACACACATATATATCACACACACAC  100
          ||| ||||||||  |||       |  | |||||||         |
seq2  ----ACA-ATATATATTCATC-------CCGAGATATATC---------C  43

seq1  ATATATATATATCACACACACATATAGATGTATATATCACACACACACAC  150
       ||||||||| |       | ||||| |||| |||||  |          
seq2  GTATATATATCT-------ATATATATATGTCTATATTTC---------T  77

seq1  AAATATATATATATCTCACACACACACACATATATATATATCTCACACAC  200
      | || |||||||||||     | | | | |||||||||||| |       
seq2  ATATGTATATATATCT-GTGTATATATATATATATATATATGT-------  119

seq1  ACACATATATATATATCACACACACACATATATATCACACACACACATAT  250
           ||| |||||||| | | |||||||      | | | | | |    
seq2  ----GTATGTATATATCGCTCTCACACAT-----GCGCCCCCCCCC----  156

seq1  ATATATATCACACACATATATATCTCACACACACACATATATCACACACA  300
              | | |||       || | | | | | |      | | | | 
seq2  --------CCCCCAC-------TCGCTCTCGCGCGC-----GCGCCCGCG  186

seq1  CATATATATCTCACACACACACATATATATCTCACACACACATATATCAC  350
      ||     ||| | |  ||   | | | | |||||||||||||     |||
seq2  CA-----ATCCCTC-TACTTTC-TCTCTCTCTCACACACACA-----CAC  224

seq1  ACACATACATATATATATATCACACACACATATATATATATCACACACAC  400
      ||||||| ||||||||||||       | ||||||||             
seq2  ACACATATATATATATATAT-------ATATATATAT-------------  254

seq1  ACACACATATATATATATCTCACACACACACACACACATATATATATCTC  450
                                                        
seq2  --------------------------------------------------  254

seq1  ACACACACATATATATCTCACACACACATATATAT  485
                                         
seq2  -----------------------------------  254

seq1: chrX_88560769_88563786
seq2: B6Ng01-309E11.g_67_1160

seq1  GAATTCACCCCATTTCGAGTGTGCTAGAAAGGTGTGTGAGAGCACACGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCCCATTTCGAGTGTGCTAGAAAGGTGTGTGAGAGCACACGGT  50

seq1  TTCACACCTGATGGGCTTTAGTGGGTCTGTCTCAACAGGCTCCATCCCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACACCTGATGGGCTTTAGTGGGTCTGTCTCAACAGGCTCCATCCCTA  100

seq1  GGTGGAAGCCTAACTCTGTTGTATGGTCAAAATCTCCGCCCAAGTACGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAAGCCTAACTCTGTTGTATGGTCAAAATCTCCGCCCAAGTACGGT  150

seq1  AGTCTAGTGGTTCTATCTACATAGGCCTTGCCCACTAGCGATCAATGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAGTGGTTCTATCTACATAGGCCTTGCCCACTAGCGATCAATGTGG  200

seq1  ACTAAGATTCTTTGTACAGGCATAGTTCCCACCCTTACATGGTCACTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGATTCTTTGTACAGGCATAGTTCCCACCCTTACATGGTCACTGTG  250

seq1  GTGGGTTCAATTAGACAGAACTCTGTCCTTTTCGAGGGGGCTAATAGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTTCAATTAGACAGAACTCTGTCCTTTTCGAGGGGGCTAATAGGAT  300

seq1  TTGTGAGCGCACCAGGCTCCTCCACTGTATGGTAGCCTTAGTGGGTCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGCGCACCAGGCTCCTCCACTGTATGGTAGCCTTAGTGGGTCTGT  350

seq1  CTCTACAGGCTCCGCCCTTTTCCCGGAATTCTTACTCTGTTGTATGTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACAGGCTCCGCCCTTTTCCCGGAATTCTTACTCTGTTGTATGTTCA  400

seq1  AAAGTTTCCACCCATGTACGGTGGCCTTAGTGGATATGTCTTGACAGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTCCACCCATGTACGGTGGCCTTAGTGGATATGTCTTGACAGGCT  450

seq1  CTGCCCTTGTCCGGAAGTCTAACTATGATGTATAGGCAAAAGTCTCCGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTTGTCCGGAAGTCTAACTATGATGTATAGGCAAAAGTCTCCGCC  500

seq1  CAAGTATGGTGGCCTTAGTGGGTCTACCAACAGGTACCTTCCTTAAGAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTATGGTGGCCTTAGTGGGTCTACCAACAGGTACCTTCCTTAAGAGC  550

seq1  TCCTGAAGTGGACATATTAGGTTTGTAAGGGTCCTGTCTATTTGTACCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAAGTGGACATATTAGGTTTGTAAGGGTCCTGTCTATTTGTACCCA  600

seq1  CCATTTCGACCATGTAAGTTTGGTGAACTATGCCTGTACAAACAATACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCGACCATGTAAGTTTGGTGAACTATGCCTGTACAAACAATACAC  650

seq1  CCCTGTATAGTGGATTTGGTTGGATTTTATTCACTGGAATCTCCCCATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTATAGTGGATTTGGTTGGATTTTATTCACTGGAATCTCCCCATTT  700

seq1  TGCGTGTGCTAGAAAGGTGTGTGAGAGCACAAGGTTTCACACCTGATGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTGTGCTAGAAAGGTGTGTGAGAGCACAAGGTTTCACACCTGATGGG  750

seq1  CTTTAATGG-GTCTGTCTCCACAGGCTCCGTCCCCATCCTGAAGCCT-AA  798
      ||||||||| ||||||||||||||||||||||||||||||||||||| ||
seq2  CTTTAATGGTGTCTGTCTCCACAGGCTCCGTCCCCATCCTGAAGCCTAAA  800

seq1  ATCTGTTGTATGGTCAAAGTCTCCGCCCAAGTACGGTAGTCTAGTGGTTC  848
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATCTGTTGTATGGTC-AAGTCTCCGCCCAAGTACGGTAGTCTAGTGGTTC  849

seq1  CATCTACATAGG-CCTTGCCCAATAGCGATCAATGTGGACTAAGATTC-T  896
      |||||||||||| |||||||| |||||||||||||||||||||||||| |
seq2  CATCTACATAGGCCCTTGCCCCATAGCGATCAATGTGGACTAAGATTCTT  899

seq1  TTGTACAGGCAT-AGTT-CCCACCC-TTACAT-GGTCACT-GTGGTGGGT  941
      |||||||||||| |||| ||||||| |||||| ||||||| |||||||||
seq2  TTGTACAGGCATAAGTTCCCCACCCATTACATGGGTCACTGGTGGTGGGT  949

seq1  TCAAATAGACAGAA--CTCTGTCCTTTTCGAGGTGGTAATAGGATTTGTT  989
      ||||||||||||||   ||||||| |||||||||||||||||||||||||
seq2  TCAAATAGACAGAAACTTCTGTCC-TTTCGAGGTGGTAATAGGATTTGTT  998

seq1  AGCGCACCAGGC-TCCTCCA-CTGTATGGTAG-CCTTAGTGGGTCTG-TC  1035
      |||||||||||| || |||| ||||||||||| ||| ||||| |||| ||
seq2  AGCGCACCAGGCTTCTTCCACCTGTATGGTAGCCCTAAGTGGATCTGTTC  1048

seq1  TC-TACAGG--CTCC--GCCCTTTTCCCGGAATTCTTACTCTGTTGTATG  1080
      || ||||||  ||||  |||||||| || | | ||| |||||||||    
seq2  TCTTACAGGGTCTCCCGGCCCTTTTTCCTGTAATCTAACTCTGTTG----  1094

seq1  TTCAAAAGTTTCCACCTATGTACGGTGGCCTTAGTGGATATGTCTTAACA  1130
                                                        
seq2  --------------------------------------------------  1094

seq1  GGCTCTGCCCTTGTCCGGAAGTCTAACTATGATGTATAGGCAAAAGTCTC  1180
                                                        
seq2  --------------------------------------------------  1094

seq1  CGCCCAAGTATGGTGGCCTTAGTGGGTCTACCAACAGGTACCTTCCTTAA  1230
                                                        
seq2  --------------------------------------------------  1094

seq1  GAGCTCCTGAAGTGGACATATTAGGTTTGTAAGGGTCCTGTCTATTTGTA  1280
                                                        
seq2  --------------------------------------------------  1094

seq1  CCCACCATTTCGACCATGTAAGTTTGGTGAACTATGCCTGTACAAACAAT  1330
                                                        
seq2  --------------------------------------------------  1094

seq1  ACACCCCTGTATAGTGGATTTGGTTGGATTTTATTCACTGGAATCTCCCC  1380
                                                        
seq2  --------------------------------------------------  1094

seq1  ATTTTGCGTGTGCTAGAAAGGTGTGTGAGAGCACAAGGTTTCACACCTGA  1430
                                                        
seq2  --------------------------------------------------  1094

seq1  TGGGCTTTAATGGGTCTGTCTCCACAGGCTCCGTCCCTTTCCTGAATACT  1480
                                                        
seq2  --------------------------------------------------  1094

seq1  AACTCTGTTGTATGGTCAAGTCTCCACCCAGGTATGGTGGCCTAGTTGAT  1530
                                                        
seq2  --------------------------------------------------  1094

seq1  CTATCTACATAGGTCTTGCACAAGAGCAATCAATGTGCACTAATATTGTC  1580
                                                        
seq2  --------------------------------------------------  1094

seq1  TGTACAGGCATAGTTCCCCAACCTTATATGGTCGCTGTGGTGGGTACAAA  1630
                                                        
seq2  --------------------------------------------------  1094

seq1  TAGACAGGAGTCTGTCCTTTTCCAGGTGGCTAATAGGATTTGGGAGCGCA  1680
                                                        
seq2  --------------------------------------------------  1094

seq1  CCAGGCTCCTCCCCTGTATGGTAGCCTTAGTGGGTCTGTCTCTACAGTCT  1730
                                                        
seq2  --------------------------------------------------  1094

seq1  CCGCCCTTTTCCAGAAGTCTTACTCTGTTGTGTGTTCAAAAGTCTCCACC  1780
                                                        
seq2  --------------------------------------------------  1094

seq1  AATGTTCGGTGGCCTTAGTGGATGTGTCTCAACAGGATCCTCCCTTGTCA  1830
                                                        
seq2  --------------------------------------------------  1094

seq1  GGAATTCTAACTATGATGTATAGGCAAAAGTCTCCGACCATGTACAGTGG  1880
                                                        
seq2  --------------------------------------------------  1094

seq1  CCTTAGTGGGTCTACCAACAGGCACCTTCCTTAAGAGCTCCTTAAGTGGA  1930
                                                        
seq2  --------------------------------------------------  1094

seq1  CATATTAGGTTTGTAAGGGCAGATGGTAACACCCCTGTATAGTGGATTTG  1980
                                                        
seq2  --------------------------------------------------  1094

seq1  GTTAGATTTTATTCACTGGAATCTCCCCATTTCGAGTGTGCTAGAAAGGT  2030
                                                        
seq2  --------------------------------------------------  1094

seq1  GTGTAGGAACTCAAGGTTTCACACCTGATGGGCTTTAGTGGGTCTGTCTC  2080
                                                        
seq2  --------------------------------------------------  1094

seq1  CACAGGCACCGTCCCTTTCCTGAAGCCTAACTCTGTTGTATGGGCAAAGT  2130
                                                        
seq2  --------------------------------------------------  1094

seq1  CTCCGCCCAGGTATGGTGGCCTAGTCGATCTCTCTACATAGGCCTTGTCC  2180
                                                        
seq2  --------------------------------------------------  1094

seq1  ACCAGCAATCAATGTGCACTAATATTGTCTGTACAGGCATAGTTCCCCAC  2230
                                                        
seq2  --------------------------------------------------  1094

seq1  CCTTACATGGTCGCTGTGGTGGGTACAAATAGACAGGACTCGGTCCTTTT  2280
                                                        
seq2  --------------------------------------------------  1094

seq1  CGAGGGGGCTAATAGGATTTGTTAGTGCACCAGGCTCCTCCCCTGTACGG  2330
                                                        
seq2  --------------------------------------------------  1094

seq1  TAGCCTTAGTAGGTCTGTCTCTACAGGCTCCGCTCTTTTCAGGAAGTCTA  2380
                                                        
seq2  --------------------------------------------------  1094

seq1  ACTCTGTTGTGTGTTCAAAAGTCTCCACCCATGTAAGGTGGCCTTAATGG  2430
                                                        
seq2  --------------------------------------------------  1094

seq1  ATATGTCTCAACAGGCTCCGCGCTTGTCCGGAAGTCTAACTATGAAGTAT  2480
                                                        
seq2  --------------------------------------------------  1094

seq1  AGGCAAAAGTCTCCGACCATGTATGGTGGCCTTAGTGGGTCTACCAACAG  2530
                                                        
seq2  --------------------------------------------------  1094

seq1  GAACCTTCCTTAAGAGCTCCTGAAGTGGACATATTAGGTTTGTAAGGGCA  2580
                                                        
seq2  --------------------------------------------------  1094

seq1  GATGGTAACACCCCTGTATAGTGGATTTGGTTGGATTTTATTCACTGGAA  2630
                                                        
seq2  --------------------------------------------------  1094

seq1  TCTCTCCATTTCGAGTGTGCTAGAAAGGTGTGTGAGAGCACACGGTTTCA  2680
                                                        
seq2  --------------------------------------------------  1094

seq1  CACCTGACAGGCTTTAGTGGGTCTGTCTCCACAGGCTCCGTCCCTCTCTG  2730
                                                        
seq2  --------------------------------------------------  1094

seq1  GAAGCCTAACTCTGTTGTATGGGCAAAGTCTCCGCCCAAGTACGGTAGTC  2780
                                                        
seq2  --------------------------------------------------  1094

seq1  TAGTGTTTCTATCTACATAGATCTTGCCCACTAGTGATCAATGTGGACTA  2830
                                                        
seq2  --------------------------------------------------  1094

seq1  AGATTCTTTGTACAGGCATAGTTCCCCTCCCTTACATGGTCGCTGTGCTG  2880
                                                        
seq2  --------------------------------------------------  1094

seq1  GGTACAAATAGACAGAACTCTGTCCTTTTCGAGGGGGCCAATAGGATTTG  2930
                                                        
seq2  --------------------------------------------------  1094

seq1  TGAGCACAACAGGATCCTCCCCTGTATGGTAGCCTTAGTGGGTCTGTCTC  2980
                                                        
seq2  --------------------------------------------------  1094

seq1  TACAGGCTCTGCCCTTTTCCGGAAGTCTAACTCTGTTG  3018
                                            
seq2  --------------------------------------  1094