BAC Information

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BAC

Clone NameB6Ng01-309L19
Chromosome3 (Build37)
Map Location 75,084,125 - 75,200,046
singlet/doubletdoublet
Overlap geneWdr49
Upstream geneLOC667434, LOC100041551, EG667459, BC050789, Serpini2
Downstream genePdcd10, Serpini1, Golph4, Fstl5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-309L19.bB6Ng01-309L19.g
ACCGA101904GA101905
length1,1621,130
definitionB6Ng01-309L19.b B6Ng01-309L19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,198,870 - 75,200,046)(75,084,125 - 75,085,265)
sequence
gaattccattttctgcctgtcacaacagcagcacggatagcattataagg
aatcacacatttttgttaaagccaacacagtacacaatgtaatcatacct
accttctttagcctctagtttaggttttgagctaatatgcaggtgaacct
ggttataaaatcccctttttatgatcaccacccttttgtatccccatgga
aagttctgaagtatgcaagaaatgttaagtagcagagacctaagtttttt
tttccccagcatattttacaccagtggctcaaagtggtggcatggaatgt
attcataagaaaatgattcagttaaatgggattccacttggtatgcagca
cgggtgttgtttgtctctccaccactttaatgacattgcagcctttgctt
atgggatcgctacctgaatctcaatgaagcttgccttctggagcctgatg
ccacacagatcctggccaggcaagctggtagaggggtcagcaatgagtct
ggtggaagaagcaggcaccactgacatttagctggctgtcatcttcagct
cagacccagcagagtgggagcgatgcagaatgcaaacctccagcttgtgg
ccgattaaacaataactctaacccattcttgcttttcaagcctggggatg
cttctccaccggctcaggaatgagtagttcagattttgtgcaaggggtgg
aaagcactttgttagtaatgagcattgtgtcatgtcaccatttcaaacat
tctgttttctggttattctaggagataaaagcccttgataaaacaattga
atgcgatttccatctgcacagaaacattcccccacaaatgttttactgaa
cttcatgaaggcaactggttaatttgggctccctgtggccgctgagagct
ggctgcatttgtttcccagagagcattctgctaattgagacctggaaaag
tgaaaatgctagtttgtgtgtagattgttaagatcctgtgctgattagct
ttagatgagctgtattcggtgagattcagctgcagacacagaaagtactg
catctctcacttgggagttgaaatattcaaaggttacactgccagctaca
atgaccaggaacgtgcgcctttagactgcaggcagcactcagatcaaggt
caagtgcatctc

gaattcagttcatatcacccatgttgtacagcctacagctgccaggaacg
tcagctccaaagcatccagtgctccttctgccttctgaaggcaccagtga
agaaggccatatccatacacataagagtaaatctcaaaataaaaacctat
tgttaccagtcaccatttgcatcccttctttctaacacagaaaaacaagg
cagtagcccactcatgacttcatttcgtagctgactttctggcaaccatt
tctataaggataaccacaaagcatttttaaagtgataaaaataaagtacg
ggctggttgtgaagtactgaaataggtcttcactaaaataacaggatgcc
ctgacttacaaatgatagagttggtttatctcctgacctctggccttgtt
tttcacaataattgacaacttcctcagactgacaaccatagcaacattct
caaagattgcctgaaacaggaaaggtgctctgtaaacagcaataacaaca
cactttggataatctgtggatttcagacttctgtaaaccttctcccacac
ccagatacccagccacattctttttttttccagccttgaaaaacgtttta
atgctaaagtacaagaattaagagaaaaaagagtaaaaaacacacagaca
cggggaaaacgaaataaatctgacgtttgtagtaggccagccgcagaaag
aatccactgtgtagaagtgtaggaggaagtgctggcatgaccggacagcc
agcctccttggtgtactgcacttctaagaagcacggtacaccacaccaca
ctcctgaagtcagaacactggattctcaggaagcgtgaatagctggtgtc
tgtcctgtgaagagtctgcactctctgtgtctcctctgtgtgcatcctct
gcagagagaccctggtggtatgagtgttcactatccagtccaaggtaatg
tgccaaccaatcacaggccatagcctctctatttaatgggttgcttgaat
gcagcaaagcagatgctgttccctgaactgtctcacagtattatcttctg
tgcccttagcaccacgtcatgctgtctgtgagggaaagctcagtatggaa
agcatggagaacattccaagttgtgtgtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_75198870_75200046
seq2: B6Ng01-309L19.b_47_1208 (reverse)

seq1  GAGATGCACTTGAC--TGTACTGAGGTGCTGCCTGCAGCTTCTTAAAAGC  48
      ||||||||||||||  ||  |||| |||||||||||||  || |||| ||
seq2  GAGATGCACTTGACCTTGATCTGA-GTGCTGCCTGCAG--TC-TAAAGGC  46

seq1  GCACGTCCCTTTGTCATGGTAGCCTGCAAGTGTAACTTTGGAATTATTTT  98
      |||||| || | ||||| |||| |||  |||||||| || ||||   |||
seq2  GCACGTTCC-TGGTCATTGTAG-CTGGCAGTGTAACCTTTGAAT--ATTT  92

seq1  CAACTCCCAAGTGGAGGAGGATTCCAGTACTTTTCTGTGTCCTGCAAGCT  148
      ||||||||||||    |||   | |||||| ||||||||| |||| ||||
seq2  CAACTCCCAAGT----GAGAGATGCAGTAC-TTTCTGTGT-CTGC-AGCT  135

seq1  GAATTCCTCACCGAATACAGCTCATCTTAAAGCTAATCAGCACAGGATCT  198
      ||||  |||||||||||||||||||| |||||||||||||||||||||||
seq2  GAAT--CTCACCGAATACAGCTCATC-TAAAGCTAATCAGCACAGGATCT  182

seq1  TAACAATCTACACACAAACCTAGCATTTTCAC-TTTCCAGGTCTCAATTA  247
      |||||||||||||||||| ||||||||||||| |||||||||||||||||
seq2  TAACAATCTACACACAAA-CTAGCATTTTCACTTTTCCAGGTCTCAATTA  231

seq1  GCAGAATGCTCTCTGGGAAACAAATGCAGCCAGCTCTCAGCGGCCACAGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAATGCTCTCTGGGAAACAAATGCAGCCAGCTCTCAGCGGCCACAGG  281

seq1  GAG-CCAAATTAACCAGTTGCCTTCATGAAGTTCAGTAAAACATTTGTGG  346
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCAAATTAACCAGTTGCCTTCATGAAGTTCAGTAAAACATTTGTGG  331

seq1  GGGAATGTTTCTGTGCAGATGGAAATCGCATTCAATTGTTTTATCAAGGG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATGTTTCTGTGCAGATGGAAATCGCATTCAATTGTTTTATCAAGGG  381

seq1  CTTTTATCTCCTAGAATAACCAGAAAACAGAATGTTTGAAATGGTGACAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATCTCCTAGAATAACCAGAAAACAGAATGTTTGAAATGGTGACAT  431

seq1  GACACAATGCTCATTACTAACAAAGTGCTTTCCACCCCTTGCACAAAATC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAATGCTCATTACTAACAAAGTGCTTTCCACCCCTTGCACAAAATC  481

seq1  TGAACTACTCATTCCTGAGCCGGTGGAGAAGCATCCCCAGGCTTGAAAAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTACTCATTCCTGAGCCGGTGGAGAAGCATCCCCAGGCTTGAAAAG  531

seq1  CAAGAATGGGTTAGAGTTATTGTTTAATCGGCCACAAGCTGGAGGTTTGC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATGGGTTAGAGTTATTGTTTAATCGGCCACAAGCTGGAGGTTTGC  581

seq1  ATTCTGCATCGCTCCCACTCTGCTGGGTCTGAGCTGAAGATGACAGCCAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGCATCGCTCCCACTCTGCTGGGTCTGAGCTGAAGATGACAGCCAG  631

seq1  CTAAATGTCAGTGGTGCCTGCTTCTTCCACCAGACTCATTGCTGACCCCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATGTCAGTGGTGCCTGCTTCTTCCACCAGACTCATTGCTGACCCCT  681

seq1  CTACCAGCTTGCCTGGCCAGGATCTGTGTGGCATCAGGCTCCAGAAGGCA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAGCTTGCCTGGCCAGGATCTGTGTGGCATCAGGCTCCAGAAGGCA  731

seq1  AGCTTCATTGAGATTCAGGTAGCGATCCCATAAGCAAAGGCTGCAATGTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCATTGAGATTCAGGTAGCGATCCCATAAGCAAAGGCTGCAATGTC  781

seq1  ATTAAAGTGGTGGAGAGACAAACAACACCCGTGCTGCATACCAAGTGGAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGTGGTGGAGAGACAAACAACACCCGTGCTGCATACCAAGTGGAA  831

seq1  TCCCATTTAACTGAATCATTTTCTTATGAATACATTCCATGCCACCACTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATTTAACTGAATCATTTTCTTATGAATACATTCCATGCCACCACTT  881

seq1  TGAGCCACTGGTGTAAAATATGCTGGGGAAAAAAAAACTTAGGTCTCTGC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCACTGGTGTAAAATATGCTGGGGAAAAAAAAACTTAGGTCTCTGC  931

seq1  TACTTAACATTTCTTGCATACTTCAGAACTTTCCATGGGGATACAAAAGG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAACATTTCTTGCATACTTCAGAACTTTCCATGGGGATACAAAAGG  981

seq1  GTGGTGATCATAAAAAGGGGATTTTATAACCAGGTTCACCTGCATATTAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGATCATAAAAAGGGGATTTTATAACCAGGTTCACCTGCATATTAG  1031

seq1  CTCAAAACCTAAACTAGAGGCTAAAGAAGGTAGGTATGATTACATTGTGT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAACCTAAACTAGAGGCTAAAGAAGGTAGGTATGATTACATTGTGT  1081

seq1  ACTGTGTTGGCTTTAACAAAAATGTGTGATTCCTTATAATGCTATCCGTG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTTGGCTTTAACAAAAATGTGTGATTCCTTATAATGCTATCCGTG  1131

seq1  CTGCTGTTGTGACAGGCAGAAAATGGAATTC  1177
      |||||||||||||||||||||||||||||||
seq2  CTGCTGTTGTGACAGGCAGAAAATGGAATTC  1162


seq1: chr3_75084125_75085265
seq2: B6Ng01-309L19.g_67_1196

seq1  GAATTCAGTTCATATCACCCATGTTGTACAGCCTACAGCTGCCAGGAACG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTCATATCACCCATGTTGTACAGCCTACAGCTGCCAGGAACG  50

seq1  TCAGCTCCAAAGCATCCAGTGCTCCTTCTGCCTTCTGAAGGCACCAGTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTCCAAAGCATCCAGTGCTCCTTCTGCCTTCTGAAGGCACCAGTGA  100

seq1  AGAAGGCCATATCCATACACATAAGAGTAAATCTCAAAATAAAAACCTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCCATATCCATACACATAAGAGTAAATCTCAAAATAAAAACCTAT  150

seq1  TGTTACCAGTCACCATTTGCATCCCTTCTTTCTAACACAGAAAAACAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACCAGTCACCATTTGCATCCCTTCTTTCTAACACAGAAAAACAAGG  200

seq1  CAGTAGCCCACTCATGACTTCATTTCGTAGCTGACTTTCTGGCAACCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGCCCACTCATGACTTCATTTCGTAGCTGACTTTCTGGCAACCATT  250

seq1  TCTATAAGGATAACCACAAAGCATTTTTAAAGTGATAAAAATAAAGTACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAAGGATAACCACAAAGCATTTTTAAAGTGATAAAAATAAAGTACG  300

seq1  GGCTGGTTGTGAAGTACTGAAATAGGTCTTCACTAAAATAACAGGATGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGTTGTGAAGTACTGAAATAGGTCTTCACTAAAATAACAGGATGCC  350

seq1  CTGACTTACAAATGATAGAGTTGGTTTATCTCCTGACCTCTGGCCTTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTTACAAATGATAGAGTTGGTTTATCTCCTGACCTCTGGCCTTGTT  400

seq1  TTTCACAATAATTGACAACTTCCTCAGACTGACAACCATAGCAACATTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACAATAATTGACAACTTCCTCAGACTGACAACCATAGCAACATTCT  450

seq1  CAAAGATTGCCTGAAACAGGAAAGGTGCTCTGTAAACAGCAATAACAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGATTGCCTGAAACAGGAAAGGTGCTCTGTAAACAGCAATAACAACA  500

seq1  CACTTTGGATAATCTGTGGATTTCAGACTTCTGTAAACCTTCTCCCACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTGGATAATCTGTGGATTTCAGACTTCTGTAAACCTTCTCCCACAC  550

seq1  CCAGATACCCAGCCACATTCTTTTTTTTTCCAGCCTTGAAAAACGTTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATACCCAGCCACATTCTTTTTTTTTCCAGCCTTGAAAAACGTTTTA  600

seq1  ATGCTAAAGTACAAGAATTAAGAGAAAAAAGAGTAAAAAACACACAGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAAAGTACAAGAATTAAGAGAAAAAAGAGTAAAAAACACACAGACA  650

seq1  CGGGGAAAACGAAATAAATCTGACGTTTGTAGTAGGCCAGCCGCAGAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGAAAACGAAATAAATCTGACGTTTGTAGTAGGCCAGCCGCAGAAAG  700

seq1  AATCCACTGTGTAGAAGTGTAGGAGGAAGTGCTGGCATGACCGGACAGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCACTGTGTAGAAGTGTAGGAGGAAGTGCTGGCATGACCGGACAGCC  750

seq1  AGCCTCCTTGGTGTACTGCACTTCTAAGAAGCACGGTACACCACACCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCCTTGGTGTACTGCACTTCTAAGAAGCACGGTACACCACACCACA  800

seq1  CTCCTGAAGTCAGAACACTGGATTCTCAGGAAGCGTGAATAGCTGGTGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGAAGTCAGAACACTGGATTCTCAGGAAGCGTGAATAGCTGGTGTC  850

seq1  TGTCCTGTGAAGAGTCTGCACTCTCTGTGTCTCCTCTGTGTGCATCCTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGTGAAGAGTCTGCACTCTCTGTGTCTCCTCTGTGTGCATCCTCT  900

seq1  GCAGAGAGACCCTGGTGGTATGAGTGTTCACTATCCAGTCCAAGGTAATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGAGACCCTGGTGGTATGAGTGTTCACTATCCAGTCCAAGGTAATG  950

seq1  TGCCAACCAATCACAGGCCATAGGCCTCTCCTATTTAAATGGTTGCTTGA  1000
      |||||||||||||||||||||| |||||| ||||||||  ||||||||||
seq2  TGCCAACCAATCACAGGCCATA-GCCTCT-CTATTTAATGGGTTGCTTGA  998

seq1  ATGCAGCAAAGCAGATGCTGTTCCCTGAAACTGTCTCCACAGTGGTTTAT  1050
      ||||||||||||||||||||||||||| |||||||| ||||||   ||||
seq2  ATGCAGCAAAGCAGATGCTGTTCCCTG-AACTGTCT-CACAGT--ATTAT  1044

seq1  C-TCTGTGCCCTTTAGCAACCCACGGTCATTGCTGTCTTGTTGAGGGAAG  1099
      | ||||||||| ||||||  |||| |||| ||||||||   |||||||| 
seq2  CTTCTGTGCCC-TTAGCA--CCAC-GTCA-TGCTGTCT--GTGAGGGAAA  1087

seq1  CCCCAGTAATGAAAGCATGGAG-ACATCACAGTTTGTGTGTCT  1141
       | |||||  |||||||||||| ||||  ||  ||||||||||
seq2  GCTCAGTATGGAAAGCATGGAGAACATTCCAAGTTGTGTGTCT  1130


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