BAC Information

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BAC

Clone NameB6Ng01-309N04
Chromosome3 (Build37)
Map Location 95,450,775 - 95,565,451
singlet/doubletdoublet
Overlap geneMcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik
Upstream geneTuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa
Downstream geneLOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1, Pafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip, Polr3gl, Ankrd34, 6330549D23Rik, Rbm8a, Pex11b, Itga10, Ankrd35, Pias3, Polr3c, Zfp364
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-309N04.bB6Ng01-309N04.g
ACCGA101968GA101969
length945614
definitionB6Ng01-309N04.b B6Ng01-309N04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,450,775 - 95,451,718)(95,564,838 - 95,565,451)
sequence
gaattcactttgtagaccaggctggcctcgaactcagaaatctacctgcc
tctcctgagtgctgggattaaaggcgtgcaccaccactgcccggcaggct
cctgttttaacttcaggagttcaaggtcatagttagctacttagagaatg
taggccagtgtagctatatgagaacctatctcaaaacccaaaagccacca
aaaatataaagcaatcatttgagacaacaaaattgcatgttagtattcag
acagacacctataattataaggactctcaaagccacacaaaatagtttaa
tgattggtattaagaatttagtttttgggggctggagagatggctcagca
gttaagagcactgactgctcttccagaggacccaggttcaattcacaaca
cccacatggtagcttgcaaccatctataataggatccgatgccctcttct
ggtatctgaagacagctacagtgtactcatatatataaaataaatctttt
tttagaaaagaataaataagtcattaaaacaaacaaacaaaaaaggatct
agtgtttgggacttgagagatggcttggttgttaaaagcatgtcttgcta
ttgagaggggacacaggtttgatgtccagcatccatatggtatgtcacaa
cctgattcctctgacctctaggcacacacaaatgtagtgcacatatgcac
ctgcaggcaacactcatacacataaaatgagtaaatataattgaaaaatt
aaatttaaaaaggaatttaatatttgttagttaagtgaataaagattctc
ttccatttgttttgggctggctgacatgttctccaagtgctggaataaaa
ggcgtgcaccaccgctgatggacatactggcttgatcttaggagcaacca
caagctatttttttgtttgtttgtttgtttgtttttttcgagaca
gaattctttctaccgctcttatttaaacttaaatatactgtttacttgaa
aaggctctcttgactatttgattttctaagaaaacagggaagtatcagga
aagtggtttctgaaatgttgaagcaggataactgtcttcaaaagcatagc
ggccgccacaagacaggagtgcgttgtacagttcaaggacggacttttca
gggcttggggtttgtgggatattttttgttttgttttgtttttgccacaa
gatcttcagtgtgtttgtttcagggtggaagtgggtgttatatgaagctg
tcagatattttaaggaaatcttcctacaacagtaaatgaagacatctgta
tatatgtgatatagtgaaacaaaagacatttctggtattcataaagataa
aacaaggattttattcttcctgtgtctgtgatttaaactcggtaccatac
tctggcttttgtatttcaccctaagtttaaaaataaataaacaagatatt
ttttaaagaatgcacaacatagtgtgtcttagcaaggacatgagtcatat
gaagcagagtgagtagttgtcactaaggtccttgatgctcactgtaaaaa
cacaaagagttcga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_95450775_95451718
seq2: B6Ng01-309N04.b_46_990

seq1  GAATTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTACCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTACCTGCC  50

seq1  TCTCCTGAGTGCTGGGATTAAAGGCGTGCACCACCACTGCCCGGCAGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGAGTGCTGGGATTAAAGGCGTGCACCACCACTGCCCGGCAGGCT  100

seq1  CCTGTTTTAACTTCAGGAGTTCAAGGTCATAGTTAGCTACTTAGAGAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTTAACTTCAGGAGTTCAAGGTCATAGTTAGCTACTTAGAGAATG  150

seq1  TAGGCCAGTGTAGCTATATGAGAACCTATCTCAAAACCCAAAAGCCACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCAGTGTAGCTATATGAGAACCTATCTCAAAACCCAAAAGCCACCA  200

seq1  AAAATATAAAGCAATCATTTGAGACAACAAAATTGCATGTTAGTATTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATAAAGCAATCATTTGAGACAACAAAATTGCATGTTAGTATTCAG  250

seq1  ACAGACACCTATAATTATAAGGACTCTCAAAGCCACACAAAATAGTTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACACCTATAATTATAAGGACTCTCAAAGCCACACAAAATAGTTTAA  300

seq1  TGATTGGTATTAAGAATTTAGTTTTTGGGGGCTGGAGAGATGGCTCAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGGTATTAAGAATTTAGTTTTTGGGGGCTGGAGAGATGGCTCAGCA  350

seq1  GTTAAGAGCACTGACTGCTCTTCCAGAGGACCCAGGTTCAATTCACAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGAGCACTGACTGCTCTTCCAGAGGACCCAGGTTCAATTCACAACA  400

seq1  CCCACATGGTAGCTTGCAACCATCTATAATAGGATCCGATGCCCTCTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACATGGTAGCTTGCAACCATCTATAATAGGATCCGATGCCCTCTTCT  450

seq1  GGTATCTGAAGACAGCTACAGTGTACTCATATATATAAAATAAATCTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCTGAAGACAGCTACAGTGTACTCATATATATAAAATAAATCTTTT  500

seq1  TTTAGAAAAGAATAAATAAGTCATTAAAACAAACAAACAAAAAAGGATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAAAGAATAAATAAGTCATTAAAACAAACAAACAAAAAAGGATCT  550

seq1  AGTGTTTGGGACTTGAGAGATGGCTTGGTTGTTAAAAGCATGTCTTGCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTGGGACTTGAGAGATGGCTTGGTTGTTAAAAGCATGTCTTGCTA  600

seq1  TTGAGAGGGGACACAGGTTTGATGTCCAGCATCCATATGGTATGTCACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAGGGGACACAGGTTTGATGTCCAGCATCCATATGGTATGTCACAA  650

seq1  CCTGATTCCTCTGACCTCTAGGCACACACAAATGTAGTGCACATATGCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATTCCTCTGACCTCTAGGCACACACAAATGTAGTGCACATATGCAC  700

seq1  CTGCAGGCAACACTCATACACATAAAATGAGTAAATATAATTGAAAAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGGCAACACTCATACACATAAAATGAGTAAATATAATTGAAAAATT  750

seq1  AAATTTAAAAAGGAATTTAATATTTGTTAGTTAAGTGAATAAAGATTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAAAAAGGAATTTAATATTTGTTAGTTAAGTGAATAAAGATTCTC  800

seq1  TTCCATTTGTTTTGGGCTGGCTGACATGTTCTCCAAGTGCTGGAATAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTTGTTTTGGGCTGGCTGACATGTTCTCCAAGTGCTGGAATAAAA  850

seq1  GGCGTGCACCACCGCTGATGGACATACTGGCTTGATCTTAGGAGCAACCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTGCACCACCGCTGATGGACATACTGGCTTGATCTTAGGAGCAACCA  900

seq1  CAAGCTATTTTTTTGTTTGTTTGTTTGTTTG-TTTTTTCGAGACA  944
      ||||||||||||||||||||||||||||||| |||||||||||||
seq2  CAAGCTATTTTTTTGTTTGTTTGTTTGTTTGTTTTTTTCGAGACA  945

seq1: chr3_95564838_95565451
seq2: B6Ng01-309N04.g_67_680 (reverse)

seq1  TGGAACTCTTTGTGTTTTTACAGTGAGCATCAAGGACCTTAGTGACAACT  50
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAACTCTTTGTGTTTTTACAGTGAGCATCAAGGACCTTAGTGACAACT  50

seq1  ACTCACTCTGCTTCATATGACTCATGTCCTTGCTAAGACACACTATGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTCTGCTTCATATGACTCATGTCCTTGCTAAGACACACTATGTTG  100

seq1  TGCATTCTTTAAAAAATATCTTGTTTATTTATTTTTAAACTTAGGGTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTCTTTAAAAAATATCTTGTTTATTTATTTTTAAACTTAGGGTGAA  150

seq1  ATACAAAAGCCAGAGTATGGTACCGAGTTTAAATCACAGACACAGGAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAAAGCCAGAGTATGGTACCGAGTTTAAATCACAGACACAGGAAGA  200

seq1  ATAAAATCCTTGTTTTATCTTTATGAATACCAGAAATGTCTTTTGTTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATCCTTGTTTTATCTTTATGAATACCAGAAATGTCTTTTGTTTCA  250

seq1  CTATATCACATATATACAGATGTCTTCATTTACTGTTGTAGGAAGATTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATCACATATATACAGATGTCTTCATTTACTGTTGTAGGAAGATTTC  300

seq1  CTTAAAATATCTGACAGCTTCATATAACACCCACTTCCACCCTGAAACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAATATCTGACAGCTTCATATAACACCCACTTCCACCCTGAAACAA  350

seq1  ACACACTGAAGATCTTGTGGCAAAAACAAAACAAAACAAAAAATATCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTGAAGATCTTGTGGCAAAAACAAAACAAAACAAAAAATATCCCA  400

seq1  CAAACCCCAAGCCCTGAAAAGTCCGTCCTTGAACTGTACAACGCACTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCCCAAGCCCTGAAAAGTCCGTCCTTGAACTGTACAACGCACTCCT  450

seq1  GTCTTGTGGCGGCCGCTATGCTTTTGAAGACAGTTATCCTGCTTCAACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGTGGCGGCCGCTATGCTTTTGAAGACAGTTATCCTGCTTCAACAT  500

seq1  TTCAGAAACCACTTTCCTGATACTTCCCTGTTTTCTTAGAAAATCAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAACCACTTTCCTGATACTTCCCTGTTTTCTTAGAAAATCAAATA  550

seq1  GTCAAGAGAGCCTTTTCAAGTAAACAGTATATTTAAGTTTAAATAAGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGAGAGCCTTTTCAAGTAAACAGTATATTTAAGTTTAAATAAGAGC  600

seq1  GGTAGAAAGAATTC  614
      ||||||||||||||
seq2  GGTAGAAAGAATTC  614