BAC Information

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BAC

Clone NameB6Ng01-310A09
Chromosome3 (Build37)
Map Location 133,968,868 - 134,076,721
singlet/doubletdoublet
Overlap genePpia-ps3_1390.1
Upstream genePpa2, E130014J05Rik, EG620205, LOC100039168, LOC668862, LOC100039199, Cxxc4
Downstream geneLOC100039234, Tacr3, LOC229837, LOC100039290, EG620439, Cenpe, Bdh2, C80638, 4933425K02Rik, Zcd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-310A09.bB6Ng01-310A09.g
ACCGA102116GA102117
length1,1161,188
definitionB6Ng01-310A09.b B6Ng01-310A09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,075,605 - 134,076,721)(133,968,868 - 133,970,061)
sequence
gaattcactactcttggggcaaccagattttggggtacagagtttagtat
ttgaatgcatagcagaaccagccaaccccaacatatctgcaaagcttaaa
gcctatgtttgcatcctaatttaaggaattacatttttcaagtcttctgt
tcacttgtactatgtgtaactgcacccttcgaatggattaaacgtttctt
cgtctcagaaagcatgaggtttctagtattttctttttatgataaatacc
gtctctataattttacaggctgaaagtgttcttccaagcctccttccagt
attttatataaaatgacccccaaaacaacacagcatggtgaacttttaaa
tgtcctctgtgcatcgcacgctcgacattgacttcgcaggtcagaaaatg
aaaacaaaagtggtgtaaaaataaaatcagtgtttgttattatcagcaca
ttaatagaatggtgattttgtttttaaggtcactgttaattttacagatt
attaaatatataaataccatttcctctataggattactggtaattctatc
aacaattgtacaatatctccatctgccagattctccctgttactttttca
actcatggacatcaacatccttgacttcatggttttctgaccaacctttc
tcatgcatacacatacatgttcccagatcctaactgctctgtcccctttt
gcatttagccatgtaccctctacctttatactcctatcttaggaaaactc
tcttctaacttaaattgcagtctctcaatggtaactctagattaatcttt
atggtcaaaatcaccctgttattttatgatatgcattaataaaaatagtt
acttcatgcacacagttgcttaaaatatactttccgctgggcagtggtgg
tgcacgcctttaatcctagcacttgggaggcagaggcaggcagatttctg
agttcaaggccagcctggtctacagagtgagttccaggacagccaggaac
agagaaaccctgtctcgaccccccccccaaaagatatactttccaagtag
atcatggaatcagtgtgctagccattgcctctatattctcttaagacctg
gaaatatagaaagttt
gaattcctaggactgagtaacagaagaaagggagggtttagaaagcattt
tcccatgcacagaaaattcagagattcggaactctgaatagaccaactat
tcttaaaaaatccttaagaacaggccccttcttgttaattacccatacaa
ggtctccactgaagtgtcaagaagtgggttagtggaattcataaaatgtg
ttttttttttttttttgaagagagagtatctgattcctacggttaagaga
atacaaaactaaagttggaattaaatgatagatttttttctaaaattaat
ttgcacacagccttcccagctgtgctaaatgttttatctccacaaagagc
ttcacaataattggcaacgtgtgtggggaaatagaatgtgaaggtattat
aaagcaatacataaactatatgtgtgggggctacaattccaaattctgac
aatgtccacagtgcatgagtgagattcggggaaagtagacagatgccttt
gtgagggagaaaaacaggggaaaagtccctttcagttgggggcaaaagca
tgcatttactttcagtagaagtagacacacttaaatccctgctgagagct
ggggagggctggatgagctgtctagaaagcgttttctctcactctataat
gttagaaattctcggacagcagtgtgcatggcaatgcacagattctgagg
cgtaagagcacatcagggcattgagaaaggtttaatgtgttctcattaga
ggagcaggggcagagagggagggggaggcgccttgggggacagagctgag
ctagaccactctgggaaagcattacaattttgtgccttctcacttcaact
ccctcactccctgagctttacatagctgtttcccagacagttcaggaaaa
tgcctcccaagccttcctgtaaagagagctagctgtgctgtagctcacag
cttgcagtttaacagtttgttgctggacttttaaatattttcttccttcc
tggacagactttataaatagacagactttataataaaaatagactgaaaa
ataaaataaaaatacccttcatattcactctatcattgaaaattcagagg
aagggggaaaagaacattgaataaatgccagattccgaacgaagaacttc
aagatataaactcccaccagctgtccgagtgtgaggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_134075605_134076721
seq2: B6Ng01-310A09.b_44_1159 (reverse)

seq1  AAACCTTCTATATTT-CAGGTCTT-AGAG-ATATAGAGGCAAATGGGCTA  47
      |||| |||||||||| |||||||| |||| ||||||||||||   |||||
seq2  AAACTTTCTATATTTCCAGGTCTTAAGAGAATATAGAGGCAA--TGGCTA  48

seq1  GCACACTGATTCCATGATCTTACTTGGAAAGTATATCTTTTGGGGGGGGG  97
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GCACACTGATTCCATGATC-TACTTGGAAAGTATATCTTTTGGGGGGGGG  97

seq1  GTCGAGACAGGGTTTCTCTGGTTCCTGGCTGTCCTGGAACTCACTCTGTA  147
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GTCGAGACAGGGTTTCTCT-GTTCCTGGCTGTCCTGGAACTCACTCTGTA  146

seq1  GACCAGGCTGGCCTTGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGGCTGGCCTTGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGT  196

seq1  GCTAGGATTAAAGGCGTGCACCACCACTGCCCAGCGGAAAGTATATTTTA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGATTAAAGGCGTGCACCACCACTGCCCAGCGGAAAGTATATTTTA  246

seq1  AGCAACTGTGTGCATGAAGTAACTATTTTTATTAATGCATATCATAAAAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACTGTGTGCATGAAGTAACTATTTTTATTAATGCATATCATAAAAT  296

seq1  AACAGGGTGATTTTGACCATAAAGATTAATCTAGAGTTACCATTGAGAGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGGTGATTTTGACCATAAAGATTAATCTAGAGTTACCATTGAGAGA  346

seq1  CTGCAATTTAAGTTAGAAGAGAGTTTTCCTAAGATAGGAGTATAAAGGTA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAATTTAAGTTAGAAGAGAGTTTTCCTAAGATAGGAGTATAAAGGTA  396

seq1  GAGGGTACATGGCTAAATGCAAAAGGGGACAGAGCAGTTAGGATCTGGGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTACATGGCTAAATGCAAAAGGGGACAGAGCAGTTAGGATCTGGGA  446

seq1  ACATGTATGTGTATGCATGAGAAAGGTTGGTCAGAAAACCATGAAGTCAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTATGTGTATGCATGAGAAAGGTTGGTCAGAAAACCATGAAGTCAA  496

seq1  GGATGTTGATGTCCATGAGTTGAAAAAGTAACAGGGAGAATCTGGCAGAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTTGATGTCCATGAGTTGAAAAAGTAACAGGGAGAATCTGGCAGAT  546

seq1  GGAGATATTGTACAATTGTTGATAGAATTACCAGTAATCCTATAGAGGAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATATTGTACAATTGTTGATAGAATTACCAGTAATCCTATAGAGGAA  596

seq1  ATGGTATTTATATATTTAATAATCTGTAAAATTAACAGTGACCTTAAAAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTATTTATATATTTAATAATCTGTAAAATTAACAGTGACCTTAAAAA  646

seq1  CAAAATCACCATTCTATTAATGTGCTGATAATAACAAACACTGATTTTAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATCACCATTCTATTAATGTGCTGATAATAACAAACACTGATTTTAT  696

seq1  TTTTACACCACTTTTGTTTTCATTTTCTGACCTGCGAAGTCAATGTCGAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACACCACTTTTGTTTTCATTTTCTGACCTGCGAAGTCAATGTCGAG  746

seq1  CGTGCGATGCACAGAGGACATTTAAAAGTTCACCATGCTGTGTTGTTTTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCGATGCACAGAGGACATTTAAAAGTTCACCATGCTGTGTTGTTTTG  796

seq1  GGGGTCATTTTATATAAAATACTGGAAGGAGGCTTGGAAGAACACTTTCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCATTTTATATAAAATACTGGAAGGAGGCTTGGAAGAACACTTTCA  846

seq1  GCCTGTAAAATTATAGAGACGGTATTTATCATAAAAAGAAAATACTAGAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTAAAATTATAGAGACGGTATTTATCATAAAAAGAAAATACTAGAA  896

seq1  ACCTCATGCTTTCTGAGACGAAGAAACGTTTAATCCATTCGAAGGGTGCA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCATGCTTTCTGAGACGAAGAAACGTTTAATCCATTCGAAGGGTGCA  946

seq1  GTTACACATAGTACAAGTGAACAGAAGACTTGAAAAATGTAATTCCTTAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACACATAGTACAAGTGAACAGAAGACTTGAAAAATGTAATTCCTTAA  996

seq1  ATTAGGATGCAAACATAGGCTTTAAGCTTTGCAGATATGTTGGGGTTGGC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGATGCAAACATAGGCTTTAAGCTTTGCAGATATGTTGGGGTTGGC  1046

seq1  TGGTTCTGCTATGCATTCAAATACTAAACTCTGTACCCCAAAATCTGGTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCTGCTATGCATTCAAATACTAAACTCTGTACCCCAAAATCTGGTT  1096

seq1  GCCCCAAGAGTAGTGAATTC  1117
      ||||||||||||||||||||
seq2  GCCCCAAGAGTAGTGAATTC  1116

seq1: chr3_133968868_133970061
seq2: B6Ng01-310A09.g_69_1256

seq1  GAATTCCTAGGACTGAGTAACAGAAGAAAGGGAGGGTTTAGAAAGCATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGGACTGAGTAACAGAAGAAAGGGAGGGTTTAGAAAGCATTT  50

seq1  TCCCATGCACAGAAAATTCAGAGATTCGGAACTCTGAATAGACCAACTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATGCACAGAAAATTCAGAGATTCGGAACTCTGAATAGACCAACTAT  100

seq1  TCTTAAAAAATCCTTAAGAACAGGCCCCTTCTTGTTAATTACCCATACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAAAAATCCTTAAGAACAGGCCCCTTCTTGTTAATTACCCATACAA  150

seq1  GGTCTCCACTGAAGTGTCAAGAAGTGGGTTAGTGGAATTCATAAAATGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCCACTGAAGTGTCAAGAAGTGGGTTAGTGGAATTCATAAAATGTG  200

seq1  TTTTTTTTTTTTTTTTGAAGAGAGAGTATCTGATTCCTACGGTTAAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTGAAGAGAGAGTATCTGATTCCTACGGTTAAGAGA  250

seq1  ATACAAAACTAAAGTTGGAATTAAATGATAGATTTTTTTCTAAAATTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAAACTAAAGTTGGAATTAAATGATAGATTTTTTTCTAAAATTAAT  300

seq1  TTGCACACAGCCTTCCCAGCTGTGCTAAATGTTTTATCTCCACAAAGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACACAGCCTTCCCAGCTGTGCTAAATGTTTTATCTCCACAAAGAGC  350

seq1  TTCACAATAATTGGCAACGTGTGTGGGGAAATAGAATGTGAAGGTATTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAATAATTGGCAACGTGTGTGGGGAAATAGAATGTGAAGGTATTAT  400

seq1  AAAGCAATACATAAACTATATGTGTGGGGGCTACAATTCCAAATTCTGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAATACATAAACTATATGTGTGGGGGCTACAATTCCAAATTCTGAC  450

seq1  AATGTCCACAGTGCATGAGTGAGATTCGGGGAAAGTAGACAGATGCCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCCACAGTGCATGAGTGAGATTCGGGGAAAGTAGACAGATGCCTTT  500

seq1  GTGAGGGAGAAAAACAGGGGAAAAGTCCCTTTCAGTTGGGGGCAAAAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGGAGAAAAACAGGGGAAAAGTCCCTTTCAGTTGGGGGCAAAAGCA  550

seq1  TGCATTTACTTTCAGTAGAAGTAGACACACTTAAATCCCTGCTGAGAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTACTTTCAGTAGAAGTAGACACACTTAAATCCCTGCTGAGAGCT  600

seq1  GGGGAGGGCTGGATGAGCTGTCTAGAAAGCGTTTTCTCTCACTCTATAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGGCTGGATGAGCTGTCTAGAAAGCGTTTTCTCTCACTCTATAAT  650

seq1  GTTAGAAATTCTCGGACAGCAGTGTGCATGGCAATGCACAGATTCTGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAAATTCTCGGACAGCAGTGTGCATGGCAATGCACAGATTCTGAGG  700

seq1  CGTAAGAGCACATCAGGGCATTGAGAAAGGTTTAATGTGTTCTCATTAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAAGAGCACATCAGGGCATTGAGAAAGGTTTAATGTGTTCTCATTAGA  750

seq1  GGAGCAGGGGCAGAGAGGGAGGGGGAGGCGCCTTGGGGGACAGAGCTGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAGGGGCAGAGAGGGAGGGGGAGGCGCCTTGGGGGACAGAGCTGAG  800

seq1  CTAGACCACTCTGGG-AAGCATTACAATTTTGTGCCTTCTCACTTCAACT  849
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTAGACCACTCTGGGAAAGCATTACAATTTTGTGCCTTCTCACTTCAACT  850

seq1  CCCTCACTCCCTGAGCTTTACATAGCTGTTTCCCAGACAGTTCAGGAAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCACTCCCTGAGCTTTACATAGCTGTTTCCCAGACAGTTCAGGAAAA  900

seq1  TGCCTCCCAAGCC-TCCTGTAAAGAGAGCTAGCTGTGCTGTAGCTCACAG  948
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCCAAGCCTTCCTGTAAAGAGAGCTAGCTGTGCTGTAGCTCACAG  950

seq1  CTTGCAGTTTAACAGTTTGTTTGCTTGGACCTTTTAAATATTTTCTTCCT  998
      ||||||||||||||||||| |||| |||| ||||||||||||||||||||
seq2  CTTGCAGTTTAACAGTTTG-TTGC-TGGA-CTTTTAAATATTTTCTTCCT  997

seq1  TCCTGGACAGACTTTATAATAGGACAGACTTTATAAT-AAAATAGACTTG  1047
      |||||||||||||||||||   ||||||||||||||| ||||||||||  
seq2  TCCTGGACAGACTTTATAAATAGACAGACTTTATAATAAAAATAGACTGA  1047

seq1  AAAATAAAAT-AAAATACCCCTTTCATATTCACTTCTAATCAATGAAAAA  1096
      |||||||||| |||||||||  ||||||||||| ||| |||| || ||||
seq2  AAAATAAAATAAAAATACCC--TTCATATTCAC-TCT-ATCATTG-AAAA  1092

seq1  TCCAGA-GAGGGGGGAAAAAAGACAATTTGATTAATGCAAGAAAATCCAG  1145
      | |||| || |||||  ||||||  |||  || ||||| ||   || | |
seq2  TTCAGAGGAAGGGGG--AAAAGAACATTGAATAAATGCCAG---ATTCCG  1137

seq1  ACAGAAG-ACTTCAGAGTTATAAACTCCACACAGCTG--CCAGAGTGAGG  1192
      |  |||| |||||| || ||||||||||   ||||||  | || ||||||
seq2  AACGAAGAACTTCA-AGATATAAACTCCCACCAGCTGTCCGAGTGTGAGG  1186

seq1  AG  1194
      ||
seq2  AG  1188