BAC Information

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BAC

Clone NameB6Ng01-310B08
Chromosome3 (Build37)
Map Location 83,033,770 - 83,175,117
singlet/doubletdoublet
Overlap geneDchs2
Upstream geneMtap9, Npy2r, LOC100041940, EG633285, Lrat, Fgg, Fga, Fgb, Plrg1, EG627094
Downstream gene1700028M03Rik, LOC100042007, LOC100042091, Sfrp2, LOC633522, Tlr2, D930015E06Rik, Mnd1, Trim2, EG624713
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-310B08.bB6Ng01-310B08.g
ACCGA102160GA102161
length1,0051,159
definitionB6Ng01-310B08.b B6Ng01-310B08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,033,770 - 83,034,762)(83,173,960 - 83,175,117)
sequence
gaattctccagtgtgtctctttgtggtgctagagtgtacgggaggaggaa
gaccccctgcaccctggacagtagaagaccaaaggaccactggggcatgg
ctatgtgaggggtgctttcttgctggcaagccagccgtgccattctaaag
agtgtcagaggagatacacctcaatggtagagtacttacctgacttgtaa
ggctctgggttcattctcctgagcctccaaacgcaaacacaaagagatga
caatgctatcagtcttgtgcttctttcacatctatcctccagtggccttt
cagggatgaaatgctgaagagacactcactttggcctaatacacaggggg
cagatacttaccaagtgccagtttatttaggtttaacattccatgcctac
cctttcctccacagttatgcttctatggaattgcttttagttttggaaag
tcagaaagatcctgaattatacacaaaacaaaatgtatttgtttcgtttc
cattgatcatctaacatttagtttttctttgtgtgtgtgtgtgtgtgttt
gctaatgtttgtgcaggccagaggttgaggttgagccactagctttctac
agtatttctttgaggcagagtctctcactcaccatgaagctcactcctta
gcaagacagtctggccggcaagcccccagaaccctcctgcctctgcctct
gcctccccagtgctgggatggaaggcatgggtggccactcctgctttttc
atgggggctgaggatgcaaattcaggtcttcatgcacagcaaggactttt
attgattgagtcatctcacagtcttgacttttgaaaatttgttttttttc
attggatatagtttttaatatagtgatatattttaaatattacttttttt
atttttaaattttatagaatataaacatttggaaggtaacaccttaatta
attcctttgaattttctttagtctttgttggtggtatctccctttgttgg
gggtg
gaattccactatgtgtactctttggttggtggtttagttcctgggagctc
tggggatagtagttagatcatattgttgttcctcctgtggagctgcaaac
cccttcagctccttgggtcctttctctagctccttcattgggcaccctgt
gctccgtccaatggatggctgtgagcatccacttctgtatttgtcaggca
ctggcagagcctgtaaggagacagctatatcaggctcctgtcagcaagca
cttgttggcatccacaatagtgtctgggttgtgaatgccaacaatttctt
gctgacaggagtctgcagcctagtcttatgaaggtattttctcaattgag
gttacttcttcccagatgaccacagcttgtgtcaacttgacataagacta
gccagtacaacaaacaaacaaatcaataaaatgtctttgaatgcagccag
gaattagaactccatttgattgataaaaaccaaactcataggctcatctt
caaagttgtggagcttaaagtaattaaagcttgtatatttctttttataa
gcaacacaaaattatagttgtacaagggaaaagaaaacttagttgataag
ctggtaaaccagtaagtttttgtgcagggatgcagatcttctcataaagt
gatgcacatttcataagaaggattcttgaatctgctaaaagaaaacaacc
caatttgatatagaattaggtatcacctagagtttaaaggtgagtagggg
taatttacaatagaggatgttgtgatgacttctgaacatgaacagagatc
ttaggaatgagtttcaaccatgagaaaggggttttaggctttcctcagag
agactgatgggatagttagagagatacatgaaaacgatgtgcagaggaaa
tggatcaccagaatgttgaggccaaatagctctaaagtaggcagggtgaa
cagcagaaaaggaaaagcttgttggtgtgacccatgggcctttctcttca
ctgggtctagccatagtgaatggaaatctgagcagatctgcccatgcagt
cttatacatttcagaaagcaagagtgcatggaacaattccaaaccatcta
agatgtccttcagaattggagctcgtgccacttgaaggcaacatgagaaa
gtaactatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_83033770_83034762
seq2: B6Ng01-310B08.b_49_1053

seq1  GAATTCTCCAGTGTGTCTCTTTGTGGTGCTAGAGTGTACGGGAGGAGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCAGTGTGTCTCTTTGTGGTGCTAGAGTGTACGGGAGGAGGAA  50

seq1  GACCCCCTGCACCCTGGACAGTAGAAGACCAAAGGACCACTGGGGCATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCCTGCACCCTGGACAGTAGAAGACCAAAGGACCACTGGGGCATGG  100

seq1  CTATGTGAGGGGTGCTTTCTTGCTGGCAAGCCAGCCGTGCCATTCTAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTGAGGGGTGCTTTCTTGCTGGCAAGCCAGCCGTGCCATTCTAAAG  150

seq1  AGTGTCAGAGGAGATACACCTCAATGGTAGAGTACTTACCTGACTTGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCAGAGGAGATACACCTCAATGGTAGAGTACTTACCTGACTTGTAA  200

seq1  GGCTCTGGGTTCATTCTCCTGAGCCTCCAAACGCAAACACAAAGAGATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTGGGTTCATTCTCCTGAGCCTCCAAACGCAAACACAAAGAGATGA  250

seq1  CAATGCTATCAGTCTTGTGCTTCTTTCACATCTATCCTCCAGTGGCCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCTATCAGTCTTGTGCTTCTTTCACATCTATCCTCCAGTGGCCTTT  300

seq1  CAGGGATGAAATGCTGAAGAGACACTCACTTTGGCCTAATACACAGGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGATGAAATGCTGAAGAGACACTCACTTTGGCCTAATACACAGGGGG  350

seq1  CAGATACTTACCAAGTGCCAGTTTATTTAGGTTTAACATTCCATGCCTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATACTTACCAAGTGCCAGTTTATTTAGGTTTAACATTCCATGCCTAC  400

seq1  CCTTTCCTCCACAGTTATGCTTCTATGGAATTGCTTTTAGTTTTGGAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCTCCACAGTTATGCTTCTATGGAATTGCTTTTAGTTTTGGAAAG  450

seq1  TCAGAAAGATCCTGAATTATACACAAAACAAAATGTATTTGTTTCGTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAGATCCTGAATTATACACAAAACAAAATGTATTTGTTTCGTTTC  500

seq1  CATTGATCATCTAACATTTAGTTTTTCTTTGTGTGTGTGTGTGTGTGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGATCATCTAACATTTAGTTTTTCTTTGTGTGTGTGTGTGTGTGTTT  550

seq1  GCTAATGTTTGTGCAGGCCAGAGGTTGAGGTTGAGCCACTAGCTTTCTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATGTTTGTGCAGGCCAGAGGTTGAGGTTGAGCCACTAGCTTTCTAC  600

seq1  AGTATTTCTTTGAGGCAGAGTCTCTCACTCACCATGAAGCTCACTCCTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTCTTTGAGGCAGAGTCTCTCACTCACCATGAAGCTCACTCCTTA  650

seq1  GCAAGACAGTCTGGCCGGCAAGCCCCCAGAACCCTCCTGCCTCTGCCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGACAGTCTGGCCGGCAAGCCCCCAGAACCCTCCTGCCTCTGCCTCT  700

seq1  GCCTCCCCAGTGCTGGGATGGAAGGCATGGGTGGCCACTCCTGCTTTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCCCAGTGCTGGGATGGAAGGCATGGGTGGCCACTCCTGCTTTTTC  750

seq1  ATGGGGGCTGAGGATGCAAATTCAGGTCTTCATGCACAGCAAGGAC-TTT  799
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATGGGGGCTGAGGATGCAAATTCAGGTCTTCATGCACAGCAAGGACTTTT  800

seq1  ATTGATTGAGTCATCTCACAGTCTTGACTTTTGAAAATTTG-TTTTTTTC  848
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATTGATTGAGTCATCTCACAGTCTTGACTTTTGAAAATTTGTTTTTTTTC  850

seq1  ATTGGATATAGTTTTTAATATAGTGATATATTTTAAATATTAC-TTTTTT  897
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATTGGATATAGTTTTTAATATAGTGATATATTTTAAATATTACTTTTTTT  900

seq1  ATTTTT-AATTTTATAGAATATAAACATTTG--AAGTAACACCT--AATA  942
      |||||| ||||||||||||||||||||||||  | |||||||||  | ||
seq2  ATTTTTAAATTTTATAGAATATAAACATTTGGAAGGTAACACCTTAATTA  950

seq1  ATT-CTTTGAA-TTTCCTTAGTCTTTGTT-GTGGTATCTCCC-TTGTTGG  988
      ||| ||||||| |||| |||||||||||| |||||||||||| |||||||
seq2  ATTCCTTTGAATTTTCTTTAGTCTTTGTTGGTGGTATCTCCCTTTGTTGG  1000

seq1  GGGTG  993
      |||||
seq2  GGGTG  1005

seq1: chr3_83173960_83175117
seq2: B6Ng01-310B08.g_71_1229 (reverse)

seq1  CATAGTTACTTTTCTCATGTTG-CTTCAGTGGGCACCGAGCCTCCA--TC  47
      ||||||||| |||||||||||| |||||   |||| |||| |||||  ||
seq2  CATAGTTAC-TTTCTCATGTTGCCTTCAAGTGGCA-CGAG-CTCCAATTC  47

seq1  TGGAAGGGACATC-TAGATGGTTTGGATTTTGTTTCATGCACTTCTGCTT  96
      ||  | ||||||| |||||||||||||  ||||| ||||||||  |||||
seq2  TG--AAGGACATCTTAGATGGTTTGGA-ATTGTTCCATGCACTCTTGCTT  94

seq1  TCTGAAATGT---AGACTGCATGGGGCAGATCTGCTCAGA-TTCCATTCA  142
      ||||||||||   ||||||||| ||||||||||||||||| |||||||||
seq2  TCTGAAATGTATAAGACTGCAT-GGGCAGATCTGCTCAGATTTCCATTCA  143

seq1  CTAGGCTTAGACCCAGGTTGAAAGAGAAAGGCCATTGGGTCACACC-ACA  191
      ||| |  |||||||||  || ||||||||||||  ||||||||||| |||
seq2  CTATGGCTAGACCCAG--TG-AAGAGAAAGGCCCATGGGTCACACCAACA  190

seq1  AGCTTTTCTGTTTCTGCTGTTCACCCTGCCTACTTTAGAGCTATTTGGCC  241
      ||||||||  ||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTCCTTTTCTGCTGTTCACCCTGCCTACTTTAGAGCTATTTGGCC  240

seq1  TCAACATTCTGGTGATCCATTTCCTCCTGCACATCGTTTTCATGTATCTC  291
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TCAACATTCTGGTGATCCATTTCCT-CTGCACATCGTTTTCATGTATCTC  289

seq1  TCTAACTATCCCATCAGTCTCTCTGAGG-AAGCCT-AAACCCCTTTCTCA  339
      |||||||||||||||||||||||||||| |||||| ||||||||||||||
seq2  TCTAACTATCCCATCAGTCTCTCTGAGGAAAGCCTAAAACCCCTTTCTCA  339

seq1  TGGTTGAAACTCATTCCTAAGATCTCTGTTCATGTTCAGAAGTCATCACA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGAAACTCATTCCTAAGATCTCTGTTCATGTTCAGAAGTCATCACA  389

seq1  ACATCCTCTATTGTAAATTA-CCCTACTCACCTTTAAACTCTAGGTGATA  438
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACATCCTCTATTGTAAATTACCCCTACTCACCTTTAAACTCTAGGTGATA  439

seq1  CCTAATTCTATATCAAATTGGGTTGTTTTCTTTTAGCAGATTCAAGAATC  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATTCTATATCAAATTGGGTTGTTTTCTTTTAGCAGATTCAAGAATC  489

seq1  CTTCTTATGAAATGTGCATCACTTTATGAGAAGATCTGCATCCCTGCACA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTATGAAATGTGCATCACTTTATGAGAAGATCTGCATCCCTGCACA  539

seq1  AAAACTTACTGGTTTACCAGCTTATCAACTAAGTTTTCTTTTCCCTTGTA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTACTGGTTTACCAGCTTATCAACTAAGTTTTCTTTTCCCTTGTA  589

seq1  CAACTATAATTTTGTGTTGCTTATAAAAAGAAATATACAAGCTTTAATTA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTATAATTTTGTGTTGCTTATAAAAAGAAATATACAAGCTTTAATTA  639

seq1  CTTTAAGCTCCACAACTTTGAAGATGAGCCTATGAGTTTGGTTTTTATCA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAGCTCCACAACTTTGAAGATGAGCCTATGAGTTTGGTTTTTATCA  689

seq1  ATCAAATGGAGTTCTAATTCCTGGCTGCATTCAAAGACATTTTATTGATT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATGGAGTTCTAATTCCTGGCTGCATTCAAAGACATTTTATTGATT  739

seq1  TGTTTGTTTGTTGTACTGGCTAGTCTTATGTCAAGTTGACACAAGCTGTG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTGTTGTACTGGCTAGTCTTATGTCAAGTTGACACAAGCTGTG  789

seq1  GTCATCTGGGAAGAAGTAACCTCAATTGAGAAAATACCTTCATAAGACTA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCTGGGAAGAAGTAACCTCAATTGAGAAAATACCTTCATAAGACTA  839

seq1  GGCTGCAGACTCCTGTCAGCAAGAAATTGTTGGCATTCACAACCCAGACA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCAGACTCCTGTCAGCAAGAAATTGTTGGCATTCACAACCCAGACA  889

seq1  CTATTGTGGATGCCAACAAGTGCTTGCTGACAGGAGCCTGATATAGCTGT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGTGGATGCCAACAAGTGCTTGCTGACAGGAGCCTGATATAGCTGT  939

seq1  CTCCTTACAGGCTCTGCCAGTGCCTGACAAATACAGAAGTGGATGCTCAC  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTACAGGCTCTGCCAGTGCCTGACAAATACAGAAGTGGATGCTCAC  989

seq1  AGCCATCCATTGGACGGAGCACAGGGTGCCCAATGAAGGAGCTAGAGAAA  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATCCATTGGACGGAGCACAGGGTGCCCAATGAAGGAGCTAGAGAAA  1039

seq1  GGACCCAAGGAGCTGAAGGGGTTTGCAGCTCCACAGGAGGAACAACAATA  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCAAGGAGCTGAAGGGGTTTGCAGCTCCACAGGAGGAACAACAATA  1089

seq1  TGATCTAACTACTATCCCCAGAGCTCCCAGGAACTAAACCACCAACCAAA  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTAACTACTATCCCCAGAGCTCCCAGGAACTAAACCACCAACCAAA  1139

seq1  GAGTACACATAGTGGAATTC  1158
      ||||||||||||||||||||
seq2  GAGTACACATAGTGGAATTC  1159