BAC Information

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BAC

Clone NameB6Ng01-310H22
Chromosome3 (Build37)
Map Location 106,319,337 - 106,320,552
singlet/doubletsinglet
Overlap geneCept1
Upstream geneKcnd3, Ddx20, 6530418L21Rik, Rap1a, EG433637, Adora3, I830077J02Rik, Atp5f1, Wdr77, Ovgp1, 1700027A23Rik, LOC100043591, Bclp2, LOC100043594, LOC670819, LOC100043129, Chia, Chi3l3, Chi3l4, EG624696, BC051070, 2010016I18Rik, Dennd2d
Downstream geneTmem77, LOC100043608, 4933421E11Rik, Cd53, Olfr266, Kcna3, AI504432, Kcna2, Kcna10, Gm131, A630076J17Rik, Prok1, Hbxip, Slc16a4, Rbm15, LOC383901, Kcnc4, Slc6a17
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-310H22.bB6Ng01-310H22.g
ACCGA102455GA102456
length1,2021,171
definitionB6Ng01-310H22.b B6Ng01-310H22.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctagctgacataaaaatctcaggagccaccaaacactacaggt
tgacagcttggaaatctccatatcaggacagttattacatcagagaaaga
aaactgcctttacaagtaataaagtgtaataacccaagctaaactatgag
gaaatttcctgacctcttcctacagttctggggataaatccagggcctac
cacagggggacaagcactccaccactaagtgacaacctagtccctgacta
ttttccaagtttcaattttatcatcttccagagaaatagtaattgcacaa
atgcatttggtttgagttctaattcaatttgtaatgagggataccattga
atccacaagacatgataacaatattcatcatcttctgttaacacagcttt
cccctcccagataaggtaatttaatctatctttcttttacaggtgtcata
agtacttttaaagataggtaatgtttgcagctaatttgtaggtataacta
tttctattacaggtaaatattaaatataactgttttgtaacttgggctta
ctattagcataatttaacatagaatatgcagtaggtataaattcacagta
gaaaaaaaaaacaaaaacaaaaacaaaaaactaccttagtttgtacaatc
tgactgatgagtttacattaacaaaaacaagcttttcccttaaaaattat
caacttgacaaactcatattcacatgaatcacattcaacgattagggtat
tattaactacagaattgtttgtaaatgaatgtggcagtcaaatgctatgg
gtgagatgcagtgttaaggactgaaaagatcagccaaggtattttacttt
ctaccctcaagaaaggggcaaatggtacatgacaagcttttattaatact
agctaatgttaactacacagctcaatgataactaaagtattttttaattc
aaacactatatacagagaaacaaatctgttcagtttttaaataagagaat
ataaatcagattacctaccatagactatggatcctcagaatttctcagaa
ttttaaacgagaaaggctcactaaagctatcacagagaacaatattgcct
caggtcttctgaaataggatcagagtaagctagaacctagggccagcctt
aaacgagcactaggtcttctattagcatcatcagcatgtccaggttaaag
aa

gaattctcacctgaggaataccgaatggcagagaagcacccgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
ttcacctcacaccagtccgaatggctaagatcaaaaattcaggtgacagt
agatgctggcaaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctgtaaatcagtcttgctgttcctct
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgtcccaaccggtaagaaggacacatgctccactat
gttcataacagccttatttataatagccagaaggtggaaagaacacagat
gtctctcaacagaggaacggatacagaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
tagaatacccaagatataagatacaatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccatccttagaattgggaa
caaaacacccatggaaggagttacaaagtttggagctgagacgaatggat
ggaccatctagagactgccatatccagggatccaccccataatcagcttc
caaatgctgacaccattgcatacactagcaaaattttgttgaaagggacc
cagatgtagctgtctcttgtgagactatgcccggggccctagcaaacaaa
gaagtggatgctcacagtcagctattgggatggatcacagggctcccaat
ggaggagctagagaaagttcccaggagctaagggatctgcaaccctatag
gtggaacaacatatgaactaccagtacccagagctcttgactctagctgc
atatgtatcaaaagatgctagtcagcatcactgcaaggagaggccatgac
tggcaaaccttatatgcccagtcgatccaggccaaatggaatgtggtttg
gaagattggggcgatctttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_106319337_106320552
seq2: B6Ng01-310H22.b_46_1247

seq1  GAATTCTCTAGCTGACATAAAAATCTCAGGAGCCACCAAACACTACAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAGCTGACATAAAAATCTCAGGAGCCACCAAACACTACAGGT  50

seq1  TGACAGCTTGGAAATCTCCATATCAGGACAGTTATTACATCAGAGAAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGCTTGGAAATCTCCATATCAGGACAGTTATTACATCAGAGAAAGA  100

seq1  AAACTGCCTTTACAAGTAATAAAGTGTAATAACCCAAGCTAAACTATGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGCCTTTACAAGTAATAAAGTGTAATAACCCAAGCTAAACTATGAG  150

seq1  GAAATTTCCTGACCTCTTCCTACAGTTCTGGGGATAAATCCAGGGCCTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTCCTGACCTCTTCCTACAGTTCTGGGGATAAATCCAGGGCCTAC  200

seq1  CACAGGGGGACAAGCACTCCACCACTAAGTGACAACCTAGTCCCTGACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGGGGACAAGCACTCCACCACTAAGTGACAACCTAGTCCCTGACTA  250

seq1  TTTTCCAAGTTTCAATTTTATCATCTTCCAGAGAAATAGTAATTGCACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCAAGTTTCAATTTTATCATCTTCCAGAGAAATAGTAATTGCACAA  300

seq1  ATGCATTTGGTTTGAGTTCTAATTCAATTTGTAATGAGGGATACCATTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTTGGTTTGAGTTCTAATTCAATTTGTAATGAGGGATACCATTGA  350

seq1  ATCCACAAGACATGATAACAATATTCATCATCTTCTGTTAACACAGCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACAAGACATGATAACAATATTCATCATCTTCTGTTAACACAGCTTT  400

seq1  CCCCTCCCAGATAAGGTAATTTAATCTATCTTTCTTTTACAGGTGTCATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCCAGATAAGGTAATTTAATCTATCTTTCTTTTACAGGTGTCATA  450

seq1  AGTACTTTTAAAGATAGGTAATGTTTGCAGCTAATTTGTAGGTATAACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTTTTAAAGATAGGTAATGTTTGCAGCTAATTTGTAGGTATAACTA  500

seq1  TTTCTATTACAGGTAAATATTAAATATAACTGTTTTGTAACTTGGGCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATTACAGGTAAATATTAAATATAACTGTTTTGTAACTTGGGCTTA  550

seq1  CTATTAGCATAATTTAACATAGAATATGCAGTAGGTATAAATTCACAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAGCATAATTTAACATAGAATATGCAGTAGGTATAAATTCACAGTA  600

seq1  GAAAAAAAAAACAAAAACAAAAACAAAAAACTACCTTAGTTTGTACAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAAAACAAAAACAAAAACAAAAAACTACCTTAGTTTGTACAATC  650

seq1  TGACTGATGAGTTTACATTAACAAAAACAAGCTTTTCCCTTAAAAATTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGATGAGTTTACATTAACAAAAACAAGCTTTTCCCTTAAAAATTAT  700

seq1  CAACTTGACAAACTCATATTCACATGAATCACATTCAACGATTAGGGTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTGACAAACTCATATTCACATGAATCACATTCAACGATTAGGGTAT  750

seq1  TATTAACTACAGAATTGTTTGTAAATGAATGTGGCAGTCAAATGCTATGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAACTACAGAATTGTTTGTAAATGAATGTGGCAGTCAAATGCTATGG  800

seq1  GTGAGATGCAGTGTTAAGGACTGAAAAGATCAGCCAAGGTATTTTACTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGATGCAGTGTTAAGGACTGAAAAGATCAGCCAAGGTATTTTACTTT  850

seq1  CTACCCTCAAG-AAGGGGCAAATGGTACATGACAAGCTTTTATTAATACT  899
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTACCCTCAAGAAAGGGGCAAATGGTACATGACAAGCTTTTATTAATACT  900

seq1  AGCTAATGTTAACTACACAGCTCAATGATAACTAAAGTA-TTTTTAATTC  948
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGCTAATGTTAACTACACAGCTCAATGATAACTAAAGTATTTTTTAATTC  950

seq1  AAACACTATATACAGAGAAAACAAATCTGTTCAGTTTTTAAATAAGGAGA  998
      ||||||||||||||||| ||||||||||||||||||||||||||| ||| 
seq2  AAACACTATATACAGAG-AAACAAATCTGTTCAGTTTTTAAATAA-GAG-  997

seq1  AATATTAAAATCAGGATTACCTACCATAGAACTATGGATCCTCAGAATTT  1048
      |||||  |||||| ||||||||||||||| ||||||||||||||||||||
seq2  AATAT--AAATCA-GATTACCTACCATAG-ACTATGGATCCTCAGAATTT  1043

seq1  CTCAGAAAATTTTAAAACGAGAAA-GCCCACTAAAAGCTATCAACAGAGA  1097
      |||||||   ||| |||||||||| || |||| ||||||||| |||||||
seq2  CTCAGAA---TTTTAAACGAGAAAGGCTCACT-AAAGCTATC-ACAGAGA  1088

seq1  CAAATA-TGCCCCAAGTCCTCTGAAATAGGAACCAGAGTAGGCCTAGACT  1146
        |||| |||| || ||| ||||||||||| | ||||||| | |||||  
seq2  ACAATATTGCCTCAGGTCTTCTGAAATAGG-ATCAGAGTAAG-CTAGAAC  1136

seq1  TAAGGGGCAGCCTTAAAAACAGAAGCACCTAGGGTCTTCTATTTAGCATC  1196
        |||| |||||||||    |  |||| ||| ||||||||| ||||||||
seq2  CTAGGGCCAGCCTTAA----ACGAGCA-CTA-GGTCTTCTA-TTAGCATC  1179

seq1  ATCAGTATG--CA-GTTAAAGAA  1216
      ||||| |||  || |||||||||
seq2  ATCAGCATGTCCAGGTTAAAGAA  1202


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