BAC Information

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BAC

Clone NameB6Ng01-310I10
Chromosome3 (Build37)
Map Location 45,239,704 - 45,291,962
singlet/doubletdoublet
Overlap geneLOC100039282
Upstream geneLOC676484, LOC100039296, Pcdh10
Downstream geneLOC433580, LOC671801, EG241989
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-310I10.bB6Ng01-310I10.g
ACCGA102479GA102480
length1,1761,107
definitionB6Ng01-310I10.b B6Ng01-310I10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,290,780 - 45,291,962)(45,239,704 - 45,240,828)
sequence
gaattctgagagaggccactaaatagacattcccatttgaagccaaaaca
gctaagtacagatcaaacagtactatgatgtaggtaggtaagagcagaaa
tatttctcaatttattagcatggataaagtctatgtgtgatgcatagtac
tggcatacaaaagaaagataactttgctacagaggattatgagtagaggt
cctaaccctgcctcaaggtgcaagacacagctgggatgtatgaagaaccc
gcagtcttcatgattgaaactgcatctggcagagggaagcactgggtgct
cacccaataactaagtggaaactttcttcagctctcctcctgacagatac
aagcacaggcgattgtataggagtattaaaatagtagtaggaaagagaat
gaaagcaagggagaaaaggaaccagcaatgcacctgatatttctcacagc
atctaacaaacttataaagcaatgccaaaacagcatgtttattcaatttc
tttaaaaagagctacactttcctttgtattctttgcaggaaccagagaat
gactaaaatattacaaggtacaaataaaaatgttcaagaaatagagttaa
aactaattgaactcatcacaaaagttacttaaaatattattaactacaaa
cagaaatgttaaaaaataaagttagaacaaattaaactattcacaaatag
tgtaagaagttcaaagatggtgactgtggattctcattttacttcatctt
gcctttgacccagctgtacaaaatggtatttaaatatagaagcaatagca
gttagtatcagtcccaaagcagagttctcacactcagaaaaaatagaaga
gaaaactgagaaaactggtttaccacaccaggagctgtgcctttctaata
cattgaatttgccctcaaatatgacaattacaggactgaatacccacaag
aattgtgggcattgtaaaattcacctgtgtactcaaagacacaattcaga
cagatattgggaaataattattttctgatttattaaaattattttttcta
aagactgcagagacaaaacatggagaagagccttggaaagaaaggagtca
gtactagtccaatgggatcaggctcaggagaggcccagcctgaaccttgt
actgatgctgtgtctgctggcagaga

gaattcattaggatccttgttgaatgaacattctgtctataaatagtgac
atgaaaccaaaccaaaaagaaaacctaacccctcacccaattggtttaca
gttgttgtgtggtgaagaatcatttcttttaaatcttctgataagtacaa
taattgatggaaatttgttaaaatatgagaaaaacccaaatctcttctgt
gggtttttctgtgactacagagtataagacaaaccaagcaaagcctgtct
gattggttgttaaacccaactaataatgaggctattgagaaagcaagtac
tctatgaatggtacctctgggacaagcactctgctctttgccacatctct
tacatgaaagagatctcattcacacatcaacacaagacaagctgagacat
gtatacgtattccttaatgataagaccagtgaccactggggctacgaatc
tactcataacctgtgtgcacctgtcactttaaactgaggtttctcagttt
aaagatgaagacagaatgcagcacttaaccaactaacgtttcattggctc
attctgaaaaccgatattctatcttttgtaaaataaaaactcttttagag
gctgaaatctcaacactattactgtagagaattgtgatttaattagaact
tatagtgcaactaataggaatgatgggaagaataaaagttaaattaaatt
atatattgtaacctttattatattcatgatagaaagtccttcaatattga
gttcttttgttataggtagattcctactttttgtcaaaatgtaggattct
aataagatggtttagaaagatatgtagctatttttttgtagtgaatagta
tagttaatatgtagctttttacaatagtattctgaatgaacacaatcttt
cctggaagggaaaaggaggctcatgactcagaagttcaagaacttacagg
accagaaagctaagaaaggttcagactcacaggttattttctaaaggtat
gaagcatcataaattgatcagaaaggaggttctcaaagtattttctgcgc
aactgggtagaggctgcagatataacttctcatttgtgtggtgtggccat
tccatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_45290780_45291962
seq2: B6Ng01-310I10.b_46_1221 (reverse)

seq1  TCTCTGCAAGCAGACCACAGCATCAGTACCAGTGTCAGGCCTTGGGGCCT  50
      ||||||| |||||| |||||||||||||| ||  ||||||    ||||||
seq2  TCTCTGCCAGCAGA-CACAGCATCAGTACAAGGTTCAGGC---TGGGCCT  46

seq1  CTCCTTGAGCTTGATCCCAATTTGGACTAGTTACTGGACCTCCTTTCTCT  100
      |||| ||||| ||||||||  ||||||||| |||||   ||||||||| |
seq2  CTCC-TGAGCCTGATCCCA--TTGGACTAG-TACTG--ACTCCTTTCTTT  90

seq1  C--AGGCTCTTCTCCATG-TTTGTCTCTGCAGTTCTTTAG--AAAATAAT  145
      |  ||||||||||||||| ||||||||||||| |||||||  ||||||||
seq2  CCAAGGCTCTTCTCCATGTTTTGTCTCTGCAG-TCTTTAGAAAAAATAAT  139

seq1  TTTAATAAATCAG-AAATAATTATTT-CCAATATCTTGTCTGAATTGTTG  193
      ||||||||||||| |||||||||||| |||||||| ||||||||||| ||
seq2  TTTAATAAATCAGAAAATAATTATTTCCCAATATC-TGTCTGAATTG-TG  187

seq1  TCTTTTGAGTACACAGGTGAATTTTACAATGCCCACAATTCTTGTGGGTA  243
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TC-TTTGAGTACACAGGTGAATTTTACAATGCCCACAATTCTTGTGGGTA  236

seq1  TTCAGTCCTGTAATTGTCATATTTGAGGGCAAATTCAATGTATTAGAAAG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTCCTGTAATTGTCATATTTGAGGGCAAATTCAATGTATTAGAAAG  286

seq1  GCACAGCTCCTGGTGTGGTAAACCAGTTTTCTCAGTTTTCTCTTCTATTT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGCTCCTGGTGTGGTAAACCAGTTTTCTCAGTTTTCTCTTCTATTT  336

seq1  TTTCTGAGTGTGAGAACTCTGCTTTGGGACTGATACTAACTGCTATTGCT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAGTGTGAGAACTCTGCTTTGGGACTGATACTAACTGCTATTGCT  386

seq1  TCTATATTTAAATACCATTTTGTACAGCTGGGTCAAAGGCAAGATGAAGT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATATTTAAATACCATTTTGTACAGCTGGGTCAAAGGCAAGATGAAGT  436

seq1  AAAATGAGAATCCACAGTCACCATCTTTGAACTTCTTACACTATTTGTGA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAGAATCCACAGTCACCATCTTTGAACTTCTTACACTATTTGTGA  486

seq1  ATAGTTTAATTTGTTCTAACTTTATTTTTTAACATTTCTGTTTGTAGTTA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTAATTTGTTCTAACTTTATTTTTTAACATTTCTGTTTGTAGTTA  536

seq1  ATAATATTTTAAGTAACTTTTGTGATGAGTTCAATTAGTTTTAACTCTAT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATTTTAAGTAACTTTTGTGATGAGTTCAATTAGTTTTAACTCTAT  586

seq1  TTCTTGAACATTTTTATTTGTACCTTGTAATATTTTAGTCATTCTCTGGT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGAACATTTTTATTTGTACCTTGTAATATTTTAGTCATTCTCTGGT  636

seq1  TCCTGCAAAGAATACAAAGGAAAGTGTAGCTCTTTTTAAAGAAATTGAAT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCAAAGAATACAAAGGAAAGTGTAGCTCTTTTTAAAGAAATTGAAT  686

seq1  AAACATGCTGTTTTGGCATTGCTTTATAAGTTTGTTAGATGCTGTGAGAA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGCTGTTTTGGCATTGCTTTATAAGTTTGTTAGATGCTGTGAGAA  736

seq1  ATATCAGGTGCATTGCTGGTTCCTTTTCTCCCTTGCTTTCATTCTCTTTC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAGGTGCATTGCTGGTTCCTTTTCTCCCTTGCTTTCATTCTCTTTC  786

seq1  CTACTACTATTTTAATACTCCTATACAATCGCCTGTGCTTGTATCTGTCA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTACTATTTTAATACTCCTATACAATCGCCTGTGCTTGTATCTGTCA  836

seq1  GGAGGAGAGCTGAAGAAAGTTTCCACTTAGTTATTGGGTGAGCACCCAGT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGAGCTGAAGAAAGTTTCCACTTAGTTATTGGGTGAGCACCCAGT  886

seq1  GCTTCCCTCTGCCAGATGCAGTTTCAATCATGAAGACTGCGGGTTCTTCA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCCTCTGCCAGATGCAGTTTCAATCATGAAGACTGCGGGTTCTTCA  936

seq1  TACATCCCAGCTGTGTCTTGCACCTTGAGGCAGGGTTAGGACCTCTACTC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCCCAGCTGTGTCTTGCACCTTGAGGCAGGGTTAGGACCTCTACTC  986

seq1  ATAATCCTCTGTAGCAAAGTTATCTTTCTTTTGTATGCCAGTACTATGCA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCCTCTGTAGCAAAGTTATCTTTCTTTTGTATGCCAGTACTATGCA  1036

seq1  TCACACATAGACTTTATCCATGCTAATAAATTGAGAAATATTTCTGCTCT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACATAGACTTTATCCATGCTAATAAATTGAGAAATATTTCTGCTCT  1086

seq1  TACCTACCTACATCATAGTACTGTTTGATCTGTACTTAGCTGTTTTGGCT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTACCTACATCATAGTACTGTTTGATCTGTACTTAGCTGTTTTGGCT  1136

seq1  TCAAATGGGAATGTCTATTTAGTGGCCTCTCTCAGAATTC  1183
      ||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATGGGAATGTCTATTTAGTGGCCTCTCTCAGAATTC  1176


seq1: chr3_45239704_45240828
seq2: B6Ng01-310I10.g_65_1171

seq1  GAATTCATTAGGATCCTTGTTGAATGAACATTCTGTCTATAAATAGTGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAGGATCCTTGTTGAATGAACATTCTGTCTATAAATAGTGAC  50

seq1  ATGAAACCAAACCAAAAAGAAAACCTAACCCCTCACCCAATTGGTTTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAACCAAACCAAAAAGAAAACCTAACCCCTCACCCAATTGGTTTACA  100

seq1  GTTGTTGTGTGGTGAAGAATCATTTCTTTTAAATCTTCTGATAAGTACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTGTGTGGTGAAGAATCATTTCTTTTAAATCTTCTGATAAGTACAA  150

seq1  TAATTGATGGAAATTTGTTAAAATATGAGAAAAACCCAAATCTCTTCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGATGGAAATTTGTTAAAATATGAGAAAAACCCAAATCTCTTCTGT  200

seq1  GGGTTTTTCTGTGACTACAGAGTATAAGACAAACCAAGCAAAGCCTGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTTTCTGTGACTACAGAGTATAAGACAAACCAAGCAAAGCCTGTCT  250

seq1  GATTGGTTGTTAAACCCAACTAATAATGAGGCTATTGAGAAAGCAAGTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGTTGTTAAACCCAACTAATAATGAGGCTATTGAGAAAGCAAGTAC  300

seq1  TCTATGAATGGTACCTCTGGGACAAGCACTCTGCTCTTTGCCACATCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGAATGGTACCTCTGGGACAAGCACTCTGCTCTTTGCCACATCTCT  350

seq1  TACATGAAAGAGATCTCATTCACACATCAACACAAGACAAGCTGAGACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGAAAGAGATCTCATTCACACATCAACACAAGACAAGCTGAGACAT  400

seq1  GTATACGTATTCCTTAATGATAAGACCAGTGACCACTGGGGCTACGAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACGTATTCCTTAATGATAAGACCAGTGACCACTGGGGCTACGAATC  450

seq1  TACTCATAACCTGTGTGCACCTGTCACTTTAAACTGAGGTTTCTCAGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCATAACCTGTGTGCACCTGTCACTTTAAACTGAGGTTTCTCAGTTT  500

seq1  AAAGATGAAGACAGAATGCAGCACTTAACCAACTAACGTTTCATTGGCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGAAGACAGAATGCAGCACTTAACCAACTAACGTTTCATTGGCTC  550

seq1  ATTCTGAAAACCGATATTCTATCTTTTGTAAAATAAAAACTCTTTTAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAAAACCGATATTCTATCTTTTGTAAAATAAAAACTCTTTTAGAG  600

seq1  GCTGAAATCTCAACACTATTACTGTAGAGAATTGTGATTTAATTAGAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAATCTCAACACTATTACTGTAGAGAATTGTGATTTAATTAGAACT  650

seq1  TATAGTGCAACTAATAGGAATGATGGGAAGAATAAAAGTTAAATTAAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTGCAACTAATAGGAATGATGGGAAGAATAAAAGTTAAATTAAATT  700

seq1  ATATATTGTAACCTTTATTATATTCATGATAGAAAGTCCTTCAATATTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTGTAACCTTTATTATATTCATGATAGAAAGTCCTTCAATATTGA  750

seq1  GTTCTTTTGTTATAGGTAGATTCCTACTTTTTGTCAAAATGTAGGATTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTTGTTATAGGTAGATTCCTACTTTTTGTCAAAATGTAGGATTCT  800

seq1  AATAAGATGGTTTAGAAAGATATGTAGCTATTTTTTTGTAGTGAATAGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGATGGTTTAGAAAGATATGTAGCTATTTTTTTGTAGTGAATAGTA  850

seq1  TAGTTAATATGTAGCTTTTTACAATAGTATTCTGAATGAACACAATCTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAATATGTAGCTTTTTACAATAGTATTCTGAATGAACACAATCTTT  900

seq1  CCTGGAAGGGAAAAGGAGGCTCATGACTCAGGAAGTTCAAGAAACTTACA  950
      |||||||||||||||||||||||||||||| |||||||||| ||||||||
seq2  CCTGGAAGGGAAAAGGAGGCTCATGACTCA-GAAGTTCAAG-AACTTACA  948

seq1  GGGACCAGAAAGCTAAGAAAGGGTCAGGACTCACAAGGTTA-TTTCTAAA  999
       ||||||||||||||||||||| ||| ||||||| |||||| ||||||||
seq2  -GGACCAGAAAGCTAAGAAAGGTTCA-GACTCAC-AGGTTATTTTCTAAA  995

seq1  GGTTATGAAAGCATCAATAAATTGATCAGGAAAGGAGGTTCTCCAAAGTA  1049
      || |||| ||||||| |||||||||||| ||||||||||||| |||||||
seq2  GG-TATG-AAGCATC-ATAAATTGATCA-GAAAGGAGGTTCT-CAAAGTA  1040

seq1  TTTTCTGGCGCAAACTGGGTAGGAAGCTGCAGGAATATAACCTCCTCATT  1099
      |||||| |||| ||||||||| || |||||||  |||||| || ||||||
seq2  TTTTCT-GCGC-AACTGGGTA-GAGGCTGCAG--ATATAA-CTTCTCATT  1084

seq1  TGGTTGTGGTGTGGGCATTTCCATGA  1125
      ||  |||||||||| || ||||||||
seq2  TG--TGTGGTGTGGCCA-TTCCATGA  1107


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