BAC Information

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BAC

Clone NameB6Ng01-310J06
Chromosome3 (Build37)
Map Location 137,011,888 - 137,012,996
singlet/doubletsinglet
Overlap geneEmcn
Upstream genePpp3ca, LOC668870, LOC100039447
Downstream geneEG229862, Ddit4l, LOC668874, H2afz, Dnajb14, Map2k1ip1, Dapp1, EG329763, LOC100039528, Mttp, Rg9mtd2, 4930579F01Rik, Adh7, Adh1, Adh6a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-310J06.bB6Ng01-310J06.g
ACCGA102517GA102518
length1,2111,099
definitionB6Ng01-310J06.b B6Ng01-310J06.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaactgaggaatatcgaatgactcagaagcaactaaagaaatt
ttcaacattcatagtcatcaggaaaattgaaatccaaacaaccctgagat
tccacctcacaccagtcagaatggctattctgaatgcttctaagtaaata
aaaattttttattaaaaataaaaaaactcaggttacagcacatgctagca
aggatgtggagaaagaggaacactcctccactgctggtgggattgcaagc
tggtacaaccactctggaaatcagtttggcggttcctcataaaattggcc
atagtactacctgaggacccagctatacaactcctgggcatatatccaga
agatgccaacatgtaatgaggacacacgctccactatgttcatagcagcc
ttatttataatagccagaagctggaaagaacccacatatctttcaagggt
ggaatggacacagaaaatgtggtacatttacacaatggagtactactcag
ctactaaaaacaatggcttcatgaaattctcaggtaaatggatggaacat
gaacatactaagtgaggcaactcagtcacaaaagaacacagattgtatgc
actcactgattagtggatattagcccagaagcttggaatacccaagatac
aattcacaaatcacatgaaactcaagaaggaagaccaaagtgtggatact
ttgatccttcttagaaggggcttcaaaatacccatggaaggagttacaga
gacaaagtgtggagcagggactgaggaaataatcatccagagactgcccc
acctggggatccatcccctatacaatcaccaaacacagacactattgtgg
atgccaacatgtagatgctgtcaggaacctgatatagctgtctcctgaga
ggtcctgccagtgcctgacaaatacagaagtgggtactcacaaggcatac
attggactgagcacagggttcctcaatgaaaggagttagagagagatcca
aggaaactgagggtttgcagtcccatagaagacacatatgagctaaccag
tatccagagtctcagactaaaccaccacccaaagaagccaccactggtgg
gactattgctcagctgcatatgttagcagaggatgctggtcggacttcat
gagaagtctgctctgtgcagccttgtatgtccccaccgtgtaagggatag
tgcccacagct
gaattcatgtaatttcttgaatgatttcaaattcataagctattaaacct
gcttcattaatcaatcactcagatcagtaggtataaagggagagtcagaa
tcttttaatggtgtgactccattgatgatacatggactaatctctaagac
agataccaccccaaagactgtgtgtgcagcacaaactggagatggtgggt
tttaaaagaggaaagagaatgcaccattgggtgggtaggaaaggtgcaga
tcttgaaagtggagtagatgaatgagtgttatcaaaacacatggacaaag
taaattctcaaaaaaatattattttaaaaatattacatattgaaatatat
aatttatatatttttatatattttataaaagtttaatatatttttaaagt
tttctatatttaataaaaaatcattttgtttgaaaatagccaatatctat
tatattttaaggcagggtctctcactgagtagccctgggtgaccttaaac
ttgcatagatgaacctggcattataaactgatagaaatctgctggttctg
actcatgagtgctggaagcaaaagcatgtgctaccacatacaacagcccc
caaaaatggttttaatctttcataaaatattaagacttagtggatctcag
aggtaggataggttagttatagagactcagccatgatgtgacaagaagtc
tagtcttggttctgtgtgtgacaagcttggccaccacagtgaacgtatgt
tagcattggtttctccatcagacaatagagaaaggtatattctccactca
tgctacaaggcaagagaaatctactttttaaatgccatataaactataaa
ttcccattggactatttatgcttatggtgactaatattgaaatcacagag
tcaatgaacagaaggatttagagacttcagattctttcttaatattggaa
ctctgccatcccagccctctctatagccacacgcttatgctgtgtgtgtg
tgtgtgttgtgtgtgtgtgtgtcacatcccaatggtcatgtttaaatatg
ccttgagtataaaaactccaaccaaaaaacgaaaaccatttgtgtcaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_137011888_137012996
seq2: B6Ng01-310J06.g_64_1162

seq1  GAATTCATGTAATTTCTTGAATGATTTCAAATTCATAAGCTATTAAACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTAATTTCTTGAATGATTTCAAATTCATAAGCTATTAAACCT  50

seq1  GCTTCATTAATCAATCACTCAGATCAGTAGGTATAAAGGGAGAGTCAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCATTAATCAATCACTCAGATCAGTAGGTATAAAGGGAGAGTCAGAA  100

seq1  TCTTTTAATGGTGTGACTCCATTGATGATACATGGACTAATCTCTAAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTAATGGTGTGACTCCATTGATGATACATGGACTAATCTCTAAGAC  150

seq1  AGATACCACCCCAAAGACTGTGTGTGCAGCACAAACTGGAGATGGTGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACCACCCCAAAGACTGTGTGTGCAGCACAAACTGGAGATGGTGGGT  200

seq1  TTTAAAAGAGGAAAGAGAATGCACCATTGGGTGGGTAGGAAAGGTGCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAGAGGAAAGAGAATGCACCATTGGGTGGGTAGGAAAGGTGCAGA  250

seq1  TCTTGAAAGTGGAGTAGATGAATGAGTGTTATCAAAACACATGGACAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAAAGTGGAGTAGATGAATGAGTGTTATCAAAACACATGGACAAAG  300

seq1  TAAATTCTCAAAAAAATATTATTTTAAAAATATTACATATTGAAATATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCTCAAAAAAATATTATTTTAAAAATATTACATATTGAAATATAT  350

seq1  AATTTATATATTTTTATATATTTTATAAAAGTTTAATATATTTTTAAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATATATTTTTATATATTTTATAAAAGTTTAATATATTTTTAAAGT  400

seq1  TTTCTATATTTAATAAAAAATCATTTTGTTTGAAAATAGCCAATATCTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATATTTAATAAAAAATCATTTTGTTTGAAAATAGCCAATATCTAT  450

seq1  TATATTTTAAGGCAGGGTCTCTCACTGAGTAGCCCTGGGTGACCTTAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTAAGGCAGGGTCTCTCACTGAGTAGCCCTGGGTGACCTTAAAC  500

seq1  TTGCATAGATGAACCTGGCATTATAAACTGATAGAAATCTGCTGGTTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATAGATGAACCTGGCATTATAAACTGATAGAAATCTGCTGGTTCTG  550

seq1  ACTCATGAGTGCTGGAAGCAAAAGCATGTGCTACCACATACAACAGCCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATGAGTGCTGGAAGCAAAAGCATGTGCTACCACATACAACAGCCCC  600

seq1  CAAAAATGGTTTTAATCTTTCATAAAATATTAAGACTTAGTGGATCTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATGGTTTTAATCTTTCATAAAATATTAAGACTTAGTGGATCTCAG  650

seq1  AGGTAGGATAGGTTAGTTATAGAGACTCAGCCATGATGTGACAAGAAGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGGATAGGTTAGTTATAGAGACTCAGCCATGATGTGACAAGAAGTC  700

seq1  TAGTCTTGGTTCTGTGTGTGACAAGCTTGGCCACCACAGTGAACGTATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTTGGTTCTGTGTGTGACAAGCTTGGCCACCACAGTGAACGTATGT  750

seq1  TAGCATTGGTTTCTCCATCAGACAATAGAGAAAGGTATATTCTCCACTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATTGGTTTCTCCATCAGACAATAGAGAAAGGTATATTCTCCACTCA  800

seq1  TGCTACAAGGCAAGAGAAATCTACTTTTTAAATGCCATATAAACTATAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACAAGGCAAGAGAAATCTACTTTTTAAATGCCATATAAACTATAAA  850

seq1  TTCCCATTGGACTATTTATGCTTATGGTGACTAATATTGAAATCACAGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATTGGACTATTTATGCTTATGGTGACTAATATTGAAATCACAGAG  900

seq1  TCAATGAACAGAAGGATTTAGAGACTTCAGGATTCTTTCTTAATAATTGG  950
      ||||||||||||||||||||||||||||| |||||||||||||| |||||
seq2  TCAATGAACAGAAGGATTTAGAGACTTCA-GATTCTTTCTTAAT-ATTGG  948

seq1  AACTCTGCCATCCCAGCCCTTCTCCTATAGCCACACGCCTTATGCTGTTG  1000
      ||||||||||||||||||| ||| ||||||||||||| ||||||||| ||
seq2  AACTCTGCCATCCCAGCCC-TCT-CTATAGCCACACG-CTTATGCTG-TG  994

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGT-TCACATCCCAATGGTCATGTTT  1049
      ||||||||||||| ||||||||||||| ||||||||||||||||||||||
seq2  TGTGTGTGTGTGT-TGTGTGTGTGTGTGTCACATCCCAATGGTCATGTTT  1043

seq1  TAAAATAATGCTTGAGTTATAAAAATCACACACAAAACACAGAAAACCAT  1099
        |||||   |||||| ||||||||   ||  ||||| || |||||||||
seq2  --AAATATGCCTTGAG-TATAAAAACTCCAACCAAAAAAC-GAAAACCAT  1089

seq1  TTGTGTCACA  1109
      ||||||||||
seq2  TTGTGTCACA  1099