BAC Information

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BAC

Clone NameB6Ng01-310K24
Chromosome3 (Build37)
Map Location 144,967,140 - 144,968,257
singlet/doubletsinglet
Overlap geneCol24a1
Upstream geneLOC545572, Hs2st1, Sep15, LOC435761, Sh3glb1, LOC668890, Clca1, Clca2, Clca4, EG622139, AI747448, Clca6, Clca3, Clca5, Odf2l
Downstream gene2410019A14Rik, Cyr61, Ddah1, LOC100040331, Bcl10, 2410004B18Rik, Syde2, Wdr63, Mcoln3, Mcoln2, Edg7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-310K24.bB6Ng01-310K24.g
ACCGA102599GA102600
length1,2001,119
definitionB6Ng01-310K24.b B6Ng01-310K24.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagctctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatattggatattagtccc
ctatctgatttgggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgctttgcagaagctttgcaatttta
tgaggtcccatttattgattctcgatcttacagcacaagccactgctgtt
ctattcaggaatttttcccctgtacccatgtcttcgaggcttttccttac
tttctcctctataagtttcagtgtctttggttttatgtggagttccttaa
tccacttagatttgaccttactacaaggagatagaaatggatcaattcgc
attcttgtacatgataaccgccagttgtgccagcaccatttgttgaaaat
gctgtcttttttccactggatggttttagctcccttgtcaaagaccaagt
gaccataggtgtgtgggttcatctctgggtcttcaattctgttccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtacagttttaggtccggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatctgcggattgccctttctaattcattgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatctatgagcatgggagatctttccatttt
ctgagatcttctttaatttctttcttcagagacttgaagttcttatcata
cagatctttcacttccttagttagagtcacggcaaggtattttatattat
ttgtgactattgagaaggtgttgtttccctaatttctttctcagcctgtt
tatccctttggtgtacagaaaggccattggacttgttgagtaaattttat
attcggctacttcattgagctgtttatcagggcttaggagtcttctggtg
aattttaggtactattaactatccatattcattccggcaaaggaattgac
tcttccattccaattggatatcccacctggaatccctcatttgtggttgc

gaattcactcaaggtcacatagctacttagtaatatgatctggacataaa
cctagactatggctgcagaacaccacagtccttaaacaccgttggcatgg
taggttttgttaaaagcaagatttgtgtcttttaagttttctcaatatta
gtaacatatttatcttgaataaccagatcaaggcacactcactcattaag
tgacaagtgaagctttaagcatcatattaaaattgttgatgaagtgccta
gtgtaagggggtggggttgctgtctctagaatgaacagcctctgtgtgac
atcagactaatgcacacaggagacagataagggcatgtctacatgtgttt
tcacacttggggtcatgtactggagataccatatctcttgagaatcagtt
ccatgatgagtccagtgtgacccactgcagatctctccctgccacatttc
actggcagccagtgccagtggcaggaaggagtacgaccacaagcagaaag
taaccacaccagcaaatctcagaaaactcaatcttcagtaaaccacgttt
gaaatggattcacttcttccctaggtgacacccaacactaggctagaagg
taaatatagaatttctatccagtaagatgatagttaaaacggctttcctt
agctgtgttaaaatctaagaaataacagaattgtagaaaatcacaatcga
ctttttcacattgattctaatcacacagatttcaccttgaagacattttt
aatgacgagagttaaacatgatttaacactacatagaattgataattaga
agaaacaccaaccgacaaaagacatcaacagattgggtttttcttaatgc
attatagagctgaagacaacaggagaataactcaagggaaaacttcctga
agggctcaagaatgggagtgcaacttcactgaagtctggagatttcaagt
gggctgttgggatagcagaaagtagctaagcacttgtataagaaactctg
agacataataggaaaaaaaaatattggatttcatagagaatatgactcaa
tcatagcagaaggtacatagcacttacatattagttaaaaaggagaatca
gtagatcttcacaattcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_144967140_144968257
seq2: B6Ng01-310K24.g_67_1185 (reverse)

seq1  ATGAATTGTGAAGATCTTACCTGATTCTC--TTTTTACTAATATGGTAGT  48
      |||||||||||||||||   |||||||||  |||| |||||||||  |||
seq2  ATGAATTGTGAAGATCT--ACTGATTCTCCTTTTTAACTAATATGTAAGT  48

seq1  GCTATGTACCTTCTGCTATGATTGGGTCATTATCTCTATGAAAT-CAATA  97
      |||||||||||||||||||||||| |||||  |||||||||||| |||||
seq2  GCTATGTACCTTCTGCTATGATTGAGTCATATTCTCTATGAAATCCAATA  98

seq1  -TTTTTTTTCCTATTATGGTCTCAGAGTTTCTTATACAAGTGCTTAGCTA  146
       |||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTCCTATTAT-GTCTCAGAGTTTCTTATACAAGTGCTTAGCTA  147

seq1  CTTCCTGCTATCCCAACAGCCCACTTTGAAATCTCCAGACTTCAGTGAAG  196
      ||| |||||||||||||||||||| |||||||||||||||||||||||||
seq2  CTTTCTGCTATCCCAACAGCCCAC-TTGAAATCTCCAGACTTCAGTGAAG  196

seq1  TTGCACCTCCCATTCTTGAGCCCTTCAGG-AGTTTT-CCTTGAGTTATTC  244
      ||||| ||||||||||||||||||||||| |||||| |||||||||||||
seq2  TTGCA-CTCCCATTCTTGAGCCCTTCAGGAAGTTTTCCCTTGAGTTATTC  245

seq1  TCCTGTTGTCTTCAGCTCTATAATGCATTAAGAAAAACCCAATCTGTTGA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTTGTCTTCAGCTCTATAATGCATTAAGAAAAACCCAATCTGTTGA  295

seq1  TGTCTTTTGTCGGTTGGTGTTTCTTCTAATTATCAATTCTATGTAGTGTT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTTGTCGGTTGGTGTTTCTTCTAATTATCAATTCTATGTAGTGTT  345

seq1  AAATCATGTTTAACTCTCGTCATTAAAAATGTCTTCAAGGTGAAATCTGT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATGTTTAACTCTCGTCATTAAAAATGTCTTCAAGGTGAAATCTGT  395

seq1  GTGATTAGAATCAATGTGAAAAAGTCGATTGTGATTTTCTACAATTCTGT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTAGAATCAATGTGAAAAAGTCGATTGTGATTTTCTACAATTCTGT  445

seq1  TATTTCTTAGATTTTAACACAGCTAAGGAAAGCCGTTTTAACTATCATCT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTTAGATTTTAACACAGCTAAGGAAAGCCGTTTTAACTATCATCT  495

seq1  TACTGGATAGAAATTCTATATTTACCTTCTAGCCTAGTGTTGGGTGTCAC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGATAGAAATTCTATATTTACCTTCTAGCCTAGTGTTGGGTGTCAC  545

seq1  CTAGGGAAGAAGTGAATCCATTTCAAACGTGGTTTACTGAAGATTGAGTT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGAAGAAGTGAATCCATTTCAAACGTGGTTTACTGAAGATTGAGTT  595

seq1  TTCTGAGATTTGCTGGTGTGGTTACTTTCTGCTTGTGGTCGTACTCCTTC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGATTTGCTGGTGTGGTTACTTTCTGCTTGTGGTCGTACTCCTTC  645

seq1  CTGCCACTGGCACTGGCTGCCAGTGAAATGTGGCAGGGAGAGATCTGCAG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCACTGGCACTGGCTGCCAGTGAAATGTGGCAGGGAGAGATCTGCAG  695

seq1  TGGGTCACACTGGACTCATCATGGAACTGATTCTCAAGAGATATGGTATC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCACACTGGACTCATCATGGAACTGATTCTCAAGAGATATGGTATC  745

seq1  TCCAGTACATGACCCCAAGTGTGAAAACACATGTAGACATGCCCTTATCT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTACATGACCCCAAGTGTGAAAACACATGTAGACATGCCCTTATCT  795

seq1  GTCTCCTGTGTGCATTAGTCTGATGTCACACAGAGGCTGTTCATTCTAGA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCTGTGTGCATTAGTCTGATGTCACACAGAGGCTGTTCATTCTAGA  845

seq1  GACAGCAACCCCACCCCCTTACACTAGGCACTTCATCAACAATTTTAATA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCAACCCCACCCCCTTACACTAGGCACTTCATCAACAATTTTAATA  895

seq1  TGATGCTTAAAGCTTCACTTGTCACTTAATGAGTGAGTGTGCCTTGATCT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCTTAAAGCTTCACTTGTCACTTAATGAGTGAGTGTGCCTTGATCT  945

seq1  GGTTATTCAAGATAAATATGTTACTAATATTGAGAAAACTTAAAAGACAC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATTCAAGATAAATATGTTACTAATATTGAGAAAACTTAAAAGACAC  995

seq1  AAATCTTGCTTTTAACAAAACCTACCATGCCAACGGTGTTTAAGGACTGT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTGCTTTTAACAAAACCTACCATGCCAACGGTGTTTAAGGACTGT  1045

seq1  GGTGTTCTGCAGCCATAGTCTAGGTTTATGTCCAGATCATATTACTAAGT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTCTGCAGCCATAGTCTAGGTTTATGTCCAGATCATATTACTAAGT  1095

seq1  AGCTATGTGACCTTGAGTGAATTC  1118
      ||||||||||||||||||||||||
seq2  AGCTATGTGACCTTGAGTGAATTC  1119