BAC Information

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BAC

Clone NameB6Ng01-310O15
Chromosome3 (Build37)
Map Location 31,382,548 - 31,526,943
singlet/doubletdoublet
Overlap genenone
Upstream geneMds1, LOC100040727, LOC100040734, LOC100040749, Arpm1, Mynn, Lrrc34, 4930558O21Rik, E230002P03Rik, Samd7, Tloc1, Gpr160, Phc3, LOC100040809, Prkci, Skil, Cldn11, Slc7a14
Downstream geneLOC625125, Kcnmb2, LOC665514, Zmat3, 4930429B21Rik, Pik3ca, Kcnmb3, Zfp639, Mfn1, Gnb4, LOC100040977
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-310O15.bB6Ng01-310O15.g
ACCGA102765GA102766
length1,1621,142
definitionB6Ng01-310O15.b B6Ng01-310O15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,525,784 - 31,526,943)(31,382,548 - 31,383,694)
sequence
gaattcattctttgttgagtctttgtgtggctttggtgttactgtgactg
tgacctcatagaatgagggtggtaatcttccttctatttgtatttttgtg
gaatattttgaggggtattgatattagttcttctttgaaagtgttttgga
attctgcactaataccactggcactgtgtcttttgttttgttttgttttg
ttttgttttgttttgttttgtttttgttttttggtttttccattgcaata
tgtttaatgactgcttctctttccttgggggttacagaactattcagatt
gttaaactccttttatatattatttgcttatactttaggaaacttttcac
tagtagaatgttatatgaacatataaaacattttatatgaacatatacat
gtcttgtgtgttagttatcccctgtgctttgtcctctactttatcctccc
acccctcaccccatctagcctttcattccattgttccccttctttctttt
atcacagctttctatcttccctcaactcaagtcccaaatatagccctttt
ctaagtttctgatctctatgggtattccaaatgaaacacacacatctaac
aattgaaagctaacatcaacaaattaaaaaaatatatatgatatttgtct
tccagaatctaagtgagctcactaagaatgttagcttccagtgttagcca
tttacctgtaaattcataatttcatttttctgaatatctgaatatcattg
cattgtatatatgtcccacattttatacatgtttaacagttgatgaacat
ttaggcagtttccatttcttagctattgtgaataaagcagctataaacat
ggatgagacacctgctctatcttagggtgtgattggttcccacaagtttg
taccttagaataactggtcctcagctggtgaactattgggaagaattaat
agtggtggcgttggagaaagtgtacagtggtgttgggtttgagatgtcat
ctcagtattctttctctctaccttgtggcttggtgtctagatgtggagcc
ttcagcctaagaataggatagagagtgtcttttggattagtgttccaaga
ataagaatagcctatgtacctgtttagtacttttggaaagaacatccgcc
tgattttatgac
gaattccattcccacattgagctgtaccgactttagccctgtggtaagtg
ctctgtgtacatcatctggtcaatgtgagttgcaccattgcttctgtttt
gcagatgaggaataagagttcaaggagttaagtctggttcccatgctggg
atggggtcagtgaggtgcaaccagtcttttgtatttctcttacatgttag
tccactgtcttagtggtgaggcacctgaggatgtcttgagtaggatcttc
ctggaagtccagtgtcatgtacaatgaatggacactagaaaggctgtctg
ccatgctgttgtgtgggaactgcttttctttttagaagaataactcacca
gaacacaaagctgagcatgtcagcagggagctgggaagcaagggaaatca
aaggccagctgcaagaagagaccaaaaagaaagaggggaaaagaaacttt
agggttgggatattattttcagattgagtataaaaacagacactggtgga
cagcatgcagagaggtcctttgaccttgaactttggcaggaaataaagcc
agtctaattacttaataaaaggcattcattaaagagattcaatttcatac
cattacttcatgaggcagctggctcttgtggaaaaacaggattggttttc
aaataattttaatctttcgaattaatatgttaggaaacttagactgggtg
gtaatgagaccaccaaaggtgattagaaccactaatggaggcccaagaaa
caaacagagttgtcgatacgagcaaattagagttgtggaactgaactgta
gggaacaagaggcagagataagaagaacaaagatggagatgtaatccatg
tgagctctaggcaggaaacaggtccttgggggatagaatctaaaagacag
aatgggttaccttatgaaatccagtcagcatccaggacagcttaggatgg
aaagtacttctcagtacagctgggaatacatttttttcaaaacatctcct
gatgtttcattgactctgaagatgttgaaaataaaagctagacttgtttt
tatgagccaatgtactgctgatagctgaagaatgaactgtgcctcccgcc
caatttatagctaaaaaaaatgctgtgatttgatcggtgagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_31525784_31526943
seq2: B6Ng01-310O15.b_46_1207 (reverse)

seq1  GTCATAAAAATCAGGGCGGATGTTC-TTCCAAAAGATCAATAACA-GTAC  48
      ||||| ||||||| ||||||||||| |||||||||  | | |||| ||||
seq2  GTCAT-AAAATCA-GGCGGATGTTCTTTCCAAAAGTACTA-AACAGGTAC  47

seq1  ATA-GCTA-TCCTATTCTTGGACACA-TAAT-CAAAAGACA--CTCTATC  92
      ||| |||| || |||||||||| ||| |||| |||||||||  |||||||
seq2  ATAGGCTATTCTTATTCTTGGA-ACACTAATCCAAAAGACACTCTCTATC  96

seq1  CTATATCTTA-GCTGAAAGCT-CACATCTTAAGACA-CAAG-CACAAGGT  138
      |||| ||||| |||||| ||| |||||||  ||||| |||| ||||||||
seq2  CTAT-TCTTAGGCTGAAGGCTCCACATCT--AGACACCAAGCCACAAGGT  143

seq1  AGAGAGAAAG-ATACTGGGAATGACATCTCAAACCCAACACCACTTGTAC  187
      |||||||||| |||||| | |||||||||||||||||||||||| |||||
seq2  AGAGAGAAAGAATACTGAG-ATGACATCTCAAACCCAACACCAC-TGTAC  191

seq1  ACTTTCTCCAACGCCACACCTATTAATTCTTCCCAAATAGTTCCACCAGC  237
      |||||||||||||||||  ||||||||||||||| ||||||| |||||||
seq2  ACTTTCTCCAACGCCACCACTATTAATTCTTCCC-AATAGTT-CACCAGC  239

seq1  TGAGGACCAGTTATTCTAAGGTACAAACTTGTGGGAACCATTCACACCCT  287
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGAGGACCAGTTATTCTAAGGTACAAACTTGTGGGAACCAATCACACCCT  289

seq1  AAGATAGAGCAGGTGTCTCATCCATGTTTATAGCTGCTTTATTCACAATA  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAGAGCAGGTGTCTCATCCATGTTTATAGCTGCTTTATTCACAATA  339

seq1  GCTAAGAAATGGAAACTGCCTAAATGTTCATCAACTGTTAAACATGTATA  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGAAATGGAAACTGCCTAAATGTTCATCAACTGTTAAACATGTATA  389

seq1  AAATGTGGGACATATATACAATGCAATGATATTCAGATATTCAGAAAAAT  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGGGACATATATACAATGCAATGATATTCAGATATTCAGAAAAAT  439

seq1  GAAATTATGAATTTACAGGTAAATGGCTAACACTGGAAGCTAACATTCTT  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTATGAATTTACAGGTAAATGGCTAACACTGGAAGCTAACATTCTT  489

seq1  AGTGAGCTCACTTAGATTCTGGAAGACAAATATCATATATATTTTTTTAA  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGCTCACTTAGATTCTGGAAGACAAATATCATATATATTTTTTTAA  539

seq1  TTTGTTGATGTTAGCTTTCAATTGTTAGATGTGTGTGTTTCATTTGGAAT  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGATGTTAGCTTTCAATTGTTAGATGTGTGTGTTTCATTTGGAAT  589

seq1  ACCCATAGAGATCAGAAACTTAGAAAAGGGCTATATTTGGGACTTGAGTT  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATAGAGATCAGAAACTTAGAAAAGGGCTATATTTGGGACTTGAGTT  639

seq1  GAGGGAAGATAGAAAGCTGTGATAAAAGAAAGAAGGGGAACAATGGAATG  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAAGATAGAAAGCTGTGATAAAAGAAAGAAGGGGAACAATGGAATG  689

seq1  AAAGGCTAGATGGGGTGAGGGGTGGGAGGATAAAGTAGAGGACAAAGCAC  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCTAGATGGGGTGAGGGGTGGGAGGATAAAGTAGAGGACAAAGCAC  739

seq1  AGGGGATAACTAACACACAAGACATGTATATGTTCATATAAAATGTTTTA  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGATAACTAACACACAAGACATGTATATGTTCATATAAAATGTTTTA  789

seq1  TATGTTCATATAACATTCTACTAGTGAAAAGTTTCCTAAAGTATAAGCAA  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTCATATAACATTCTACTAGTGAAAAGTTTCCTAAAGTATAAGCAA  839

seq1  ATAATATATAAAAGGAGTTTAACAATCTGAATAGTTCTGTAACCCCCAAG  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATATAAAAGGAGTTTAACAATCTGAATAGTTCTGTAACCCCCAAG  889

seq1  GAAAGAGAAGCAGTCATTAAACATATTGCAATGGAAAAACCAAAAAACAA  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGAAGCAGTCATTAAACATATTGCAATGGAAAAACCAAAAAACAA  939

seq1  AAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAAGACACAG  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAAGACACAG  989

seq1  TGCCAGTGGTATTAGTGCAGAATTCCAAAACACTTTCAAAGAAGAACTAA  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGTGGTATTAGTGCAGAATTCCAAAACACTTTCAAAGAAGAACTAA  1039

seq1  TATCAATACCCCTCAAAATATTCCACAAAAATACAAATAGAAGGAAGATT  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAATACCCCTCAAAATATTCCACAAAAATACAAATAGAAGGAAGATT  1089

seq1  ACCACCCTCATTCTATGAGGTCACAGTCACAGTAACACCAAAGCCACACA  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCCTCATTCTATGAGGTCACAGTCACAGTAACACCAAAGCCACACA  1139

seq1  AAGACTCAACAAAGAATGAATTC  1160
      |||||||||||||||||||||||
seq2  AAGACTCAACAAAGAATGAATTC  1162

seq1: chr3_31382548_31383694
seq2: B6Ng01-310O15.g_69_1210

seq1  GAATTCCATTCCCACATTGAGCTGTACCGACTTTAGCCCTGTGGTAAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTCCCACATTGAGCTGTACCGACTTTAGCCCTGTGGTAAGTG  50

seq1  CTCTGTGTACATCATCTGGTCAATGTGAGTTGCACCATTGCTTCTGTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGTACATCATCTGGTCAATGTGAGTTGCACCATTGCTTCTGTTTT  100

seq1  GCAGATGAGGAATAAGAGTTCAAGGAGTTAAGTCTGGTTCCCATGCTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATGAGGAATAAGAGTTCAAGGAGTTAAGTCTGGTTCCCATGCTGGG  150

seq1  ATGGGGTCAGTGAGGTGCAACCAGTCTTTTGTATTTCTCTTACATGTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGTCAGTGAGGTGCAACCAGTCTTTTGTATTTCTCTTACATGTTAG  200

seq1  TCCACTGTCTTAGTGGTGAGGCACCTGAGGATGTCTTGAGTAGGATCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTGTCTTAGTGGTGAGGCACCTGAGGATGTCTTGAGTAGGATCTTC  250

seq1  CTGGAAGTCCAGTGTCATGTACAATGAATGGACACTAGAAAGGCTGTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGTCCAGTGTCATGTACAATGAATGGACACTAGAAAGGCTGTCTG  300

seq1  CCATGCTGTTGTGTGGGAACTGCTTTTCTTTTTAGAAGAATAACTCACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCTGTTGTGTGGGAACTGCTTTTCTTTTTAGAAGAATAACTCACCA  350

seq1  GAACACAAAGCTGAGCATGTCAGCAGGGAGCTGGGAAGCAAGGGAAATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACAAAGCTGAGCATGTCAGCAGGGAGCTGGGAAGCAAGGGAAATCA  400

seq1  AAGGCCAGCTGCAAGAAGAGACCAAAAAGAAAGAGGGGAAAAGAAACTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCAGCTGCAAGAAGAGACCAAAAAGAAAGAGGGGAAAAGAAACTTT  450

seq1  AGGGTTGGGATATTATTTTCAGATTGAGTATAAAAACAGACACTGGTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTGGGATATTATTTTCAGATTGAGTATAAAAACAGACACTGGTGGA  500

seq1  CAGCATGCAGAGAGGTCCTTTGACCTTGAACTTTGGCAGGAAATAAAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATGCAGAGAGGTCCTTTGACCTTGAACTTTGGCAGGAAATAAAGCC  550

seq1  AGTCTAATTACTTAATAAAAGGCATTCATTAAAGAGATTCAATTTCATAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAATTACTTAATAAAAGGCATTCATTAAAGAGATTCAATTTCATAC  600

seq1  CATTACTTCATGAGGCAGCTGGCTCTTGTGGAAAAACAGGATTGGTTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACTTCATGAGGCAGCTGGCTCTTGTGGAAAAACAGGATTGGTTTTC  650

seq1  AAATAATTTTAATCTTTCGAATTAATATGTTAGGAAACTTAGACTGGGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATTTTAATCTTTCGAATTAATATGTTAGGAAACTTAGACTGGGTG  700

seq1  GTAATGAGACCACCAAAGGTGATTAGAACCACTAATGGAGGCCCAAGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGAGACCACCAAAGGTGATTAGAACCACTAATGGAGGCCCAAGAAA  750

seq1  CAAACAGAGTTGTCGATACGAGCAAATTAGAGTTGTGGAACTGAACTGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAGAGTTGTCGATACGAGCAAATTAGAGTTGTGGAACTGAACTGTA  800

seq1  GGGAACAAGAGGCAGAGATAAGAAGAACAAAGATGGAGATGTAATCCATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACAAGAGGCAGAGATAAGAAGAACAAAGATGGAGATGTAATCCATG  850

seq1  TGAGCTCTAGGCAGGAAACAGGTCCTT-GGGGATAGAATCTAAAAAGACA  899
      ||||||||||||||||||||||||||| ||||||||||||| ||||||| 
seq2  TGAGCTCTAGGCAGGAAACAGGTCCTTGGGGGATAGAATCT-AAAAGAC-  898

seq1  AGAAT-GGTTACCTTATGAAATCCAGTCAGCATCCAGGACAGCTTAGGAT  948
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGGGTTACCTTATGAAATCCAGTCAGCATCCAGGACAGCTTAGGAT  948

seq1  GGAAAGTACTTCTCAGTAACAGCTGGGAATACATTTTTT--CAAACATCT  996
      ||||||||||||||||| |||||||||||||||||||||   ||||||||
seq2  GGAAAGTACTTCTCAGT-ACAGCTGGGAATACATTTTTTTCAAAACATCT  997

seq1  CCTGGTTGTTTCATTGAACTCTTGAAGATGTTTGGAAAATAAAAAGCTAG  1046
      ||| | |||||||||| |||| ||||||||||  |||||| |||||||||
seq2  CCT-GATGTTTCATTG-ACTC-TGAAGATGTT--GAAAAT-AAAAGCTAG  1041

seq1  ACTTGTTTTTAATGAGCCCATTGGTACTGCTGATAGCTG-AGGATGAACT  1095
      |||||||||| ||||||| ||  |||||||||||||||| || |||||||
seq2  ACTTGTTTTT-ATGAGCCAAT--GTACTGCTGATAGCTGAAGAATGAACT  1088

seq1  GTGGCT-CCGCCCA--TTATAGCTAAAAAAAAAAATGCTGTG-TTTGAT-  1140
      ||| || |||||||  ||||||||   ||||||||||||||| |||||| 
seq2  GTGCCTCCCGCCCAATTTATAGCT---AAAAAAAATGCTGTGATTTGATC  1135

seq1  AGTGAGC  1147
       ||||||
seq2  GGTGAGC  1142