BAC Information

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BAC

Clone NameB6Ng01-311A18
Chromosome3 (Build37)
Map Location 148,977,661 - 149,207,233
singlet/doubletdoublet
Overlap geneEG381483
Upstream geneLOC100040354, Lphn2, LOC100040368, LOC668893
Downstream geneLOC100040620, LOC100040633, LOC100040455, LOC100040463, LOC623554
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-311A18.bB6Ng01-311A18.g
ACCGA102861GA102862
length9591,072
definitionB6Ng01-311A18.b B6Ng01-311A18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,977,661 - 148,978,620)(149,206,159 - 149,207,233)
sequence
gaattcataccatagctaaaaccatcctgggacttactttgaaattcatc
gtttgtctttagaaactatgtaggctccatagtctttcgaatgagttgtg
gagtttagaggaagtagccagccacctagaacaaaaacaaaacactcaat
gtttcaaattcagcatgaaaaacaaaatcaagaggatggaaggtgctctg
ctccacacattcagtgttttgcttcggagtgtagggatggaatactaata
ccgagggacactggatagctgaaccaccatgtttgtactaggtgtttggg
gaatcagctcagaggaaaagagcaaaggctacaaatgagtcctggaaatg
aacaatgtaaccaaacccaggagggaggagcctgctgccacccacctagg
gagacctgttaatcagcagatcaatttcactcttatctgagtcattaggc
agccattgataccacctgctcactttaaacatacaaatacagaccagaca
tcagaaagctgacaccacgctgcctgcaaaagccctctctgtatagagtg
acaggaggaccaggacccaactccgaatccaagaatctaggcatctgctc
ctccagcagacacaggtgggagagtgaatcagaaagctggtctccatggg
aagggagaagacagctatgccagaacacaggagctaggaaaattgaaagt
caactggaactcaagaaagatttaatgcactgggggaagggggtcctctt
tcttctgaaatagttctatcccttggcttcagagtggtgattccttaaaa
agacacggataacagagatctcgtgagttagctttattgattttgagaac
cactgactccagagctgtagcttaagggaacccaacactgtctgggttgg
gttgtccgctactaatggctaagttcaaaataactccatggaattggggg
ggggggggg
gaattcagggatctctaatgtgctgtaaattagaatattaacaccggcaa
cctaggtataaaaaatatataagcacaaaaaaatggaagaaaagcaatat
ctgacctcaatgacaggcataaataagtctggcttaaaagactacttcta
aatattgaaaagtctcggatacattttaggacaaaaactataactttagg
tatgattgcaaccagattttaatgtggattttatctggagggatacacaa
taataatctatgaaaggattaactgccatgatatggtattgacgtgggga
ctgtcttaatatcacattggcaacctttagcaaagtctaattattttgta
atctttgaggggagggggtccgttgcttgaggccagtgtccaataaagac
aattcctactaatgccttctcatatttgccttgactttagaaactgaaga
gctttgatttagcccaatcctctctccatcctacttcctagggtggaaga
ggtgcagtggataacagggcagaagcaagtgtctgctaggaaatgtgaga
gaaaaaatttgtgaattgctagaaaatgggtgacaactggtttggagata
tccccccgtcacccatctctgatgctttaaatggagcctttgtgactaaa
ctagagcccataattatactctgagattcttatgaagaaagaaaagtaaa
tatctctttgttttttaccgatgcagttcacaaaatttacatctaacagc
ccacattactgttctgttctctaacctggcatgtacattttcagtatcat
tgtaaatcttgtatctttgagtctctgtataaaaaaacattttaacaaat
gtaatttctaagttcttgggttacagacgaacttgatactttagggttga
atgagtttgggataggttccttgttatcattactttaaaaaaacttcaaa
cgatttagaatatttttcagacagatgtctcacaatcatttagtcataaa
gaacatgtgatctctacattgttgaccacgtcgagccactctggcgtact
caccgaaataaaggttggcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_148977661_148978620
seq2: B6Ng01-311A18.b_46_1003

seq1  GAATTCATACCATAGCTAAAACCATCCTGGGACTTACTTTGAAATTCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACCATAGCTAAAACCATCCTGGGACTTACTTTGAAATTCATC  50

seq1  GTTTGTCTTTAGAAACTATGTAGGCTCCATAGTCTTTCGAATGAGTTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTCTTTAGAAACTATGTAGGCTCCATAGTCTTTCGAATGAGTTGTG  100

seq1  GAGTTTAGAGGAAGTAGCCAGCCACCTAGAACAAAAACAAAACACTCAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTAGAGGAAGTAGCCAGCCACCTAGAACAAAAACAAAACACTCAAT  150

seq1  GTTTCAAATTCAGCATGAAAAACAAAATCAAGAGGATGGAAGGTGCTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAAATTCAGCATGAAAAACAAAATCAAGAGGATGGAAGGTGCTCTG  200

seq1  CTCCACACATTCAGTGTTTTGCTTCGGAGTGTAGGGATGGAATACTAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACACATTCAGTGTTTTGCTTCGGAGTGTAGGGATGGAATACTAATA  250

seq1  CCGAGGGACACTGGATAGCTGAACCACCATGTTTGTACTAGGTGTTTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGGGACACTGGATAGCTGAACCACCATGTTTGTACTAGGTGTTTGGG  300

seq1  GAATCAGCTCAGAGGAAAAGAGCAAAGGCTACAAATGAGTCCTGGAAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAGCTCAGAGGAAAAGAGCAAAGGCTACAAATGAGTCCTGGAAATG  350

seq1  AACAATGTAACCAAACCCAGGAGGGAGGAGCCTGCTGCCACCCACCTAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGTAACCAAACCCAGGAGGGAGGAGCCTGCTGCCACCCACCTAGG  400

seq1  GAGACCTGTTAATCAGCAGATCAATTTCACTCTTATCTGAGTCATTAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCTGTTAATCAGCAGATCAATTTCACTCTTATCTGAGTCATTAGGC  450

seq1  AGCCATTGATACCACCTGCTCACTTTAAACATACAAATACAGACCAGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATTGATACCACCTGCTCACTTTAAACATACAAATACAGACCAGACA  500

seq1  TCAGAAAGCTGACACCACGCTGCCTGCAAAAGCCCTCTCTGTATAGAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAGCTGACACCACGCTGCCTGCAAAAGCCCTCTCTGTATAGAGTG  550

seq1  ACAGGAGGACCAGGACCCAACTCCGAATCCAAGAATCTAGGCATCTGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAGGACCAGGACCCAACTCCGAATCCAAGAATCTAGGCATCTGCTC  600

seq1  CTCCAGCAGACACAGGTGGGAGAGTGAATCAGAAAGCTGGTCTCCATGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCAGACACAGGTGGGAGAGTGAATCAGAAAGCTGGTCTCCATGGG  650

seq1  AAGGGAGAAGACAGCTATGCCAGAACACAGGAGCTAGGAAAATTGAAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAGAAGACAGCTATGCCAGAACACAGGAGCTAGGAAAATTGAAAGT  700

seq1  CAACTGGAACTCAAGAAAGATTTAATGCACTGGGGGAAGGGGGTCCTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGGAACTCAAGAAAGATTTAATGCACTGGGGGAAGGGGGTCCTCTT  750

seq1  TCTTCTGAAATAGTTCTATCCCTTGGCTTCAGAGTGGTGATTCCTTAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGAAATAGTTCTATCCCTTGGCTTCAGAGTGGTGATTCCTTAAAA  800

seq1  AGACACGGATAACAGAGATCTCGTGAGTTAGCTTTATTGATTTTGAGAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACGGATAACAGAGATCTCGTGAGTTAGCTTTATTGATTTTGAGAAC  850

seq1  CACTGACTCCAGAGCTGTAGCTTAAGGGAACCCAACACTTGTCT-GGTTG  899
      |||||||||||||||||||||||||||||||||||||| ||||| |||||
seq2  CACTGACTCCAGAGCTGTAGCTTAAGGGAACCCAACAC-TGTCTGGGTTG  899

seq1  GGTTGTCCGCTACTAATGGCTAAGGTTCAAAAATAACTCCATGGAATTGG  949
      ||||||||||||||||||||||| |||| |||||||||||||||||||||
seq2  GGTTGTCCGCTACTAATGGCTAA-GTTC-AAAATAACTCCATGGAATTGG  947

seq1  GGGGGGGGGGG  960
      |||||||||||
seq2  GGGGGGGGGGG  958

seq1: chr3_149206159_149207233
seq2: B6Ng01-311A18.g_65_1136 (reverse)

seq1  TTTGCCAACC-CTATTTCGTTGAGTACGGCAGAGTGGCTCGGAACGTGGT  49
      ||||||||||  ||||||| |||||||| ||||||||||||  |||||||
seq2  TTTGCCAACCTTTATTTCGGTGAGTACGCCAGAGTGGCTCG--ACGTGGT  48

seq1  C-ACAATGTAGAGATCACATGTTCTTTTATGACTAAAATGATTGTGAGAC  98
      | |||||||||||||||||||||| ||||||||| |||||||||||||||
seq2  CAACAATGTAGAGATCACATGTTC-TTTATGACT-AAATGATTGTGAGAC  96

seq1  ATTCTGTCTG-AAAATA-TCTAAATCGTTTGAAGTTTTTTTTAAAGTAAT  146
      | |||||||| |||||| |||||||||||||||| |||||||||||||||
seq2  A-TCTGTCTGAAAAATATTCTAAATCGTTTGAAG-TTTTTTTAAAGTAAT  144

seq1  GATAACAAGGAACCTATCCCAAACTCATTCAAACCCTAAAGTATCAAGTT  196
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GATAACAAGGAACCTATCCCAAACTCATTC-AACCCTAAAGTATCAAGTT  193

seq1  CGTCTGTAACCCAAGAACTTAGAAATTACATTTGTTAAAATGTTTTTTTA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTGTAACCCAAGAACTTAGAAATTACATTTGTTAAAATGTTTTTTTA  243

seq1  TACAGAGACTCAAAGATACAAGATTTACAATGATACTGAAAATGTACATG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGACTCAAAGATACAAGATTTACAATGATACTGAAAATGTACATG  293

seq1  CCAGGTTAGAGAACAGAACAGTAATGTGGGCTGTTAGATGTAAATTTTGT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTTAGAGAACAGAACAGTAATGTGGGCTGTTAGATGTAAATTTTGT  343

seq1  GAACTGCATCGGTAAAAAACAAAGAGATATTTACTTTTCTTTCTTCATAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGCATCGGTAAAAAACAAAGAGATATTTACTTTTCTTTCTTCATAA  393

seq1  GAATCTCAGAGTATAATTATGGGCTCTAGTTTAGTCACAAAGGCTCCATT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTCAGAGTATAATTATGGGCTCTAGTTTAGTCACAAAGGCTCCATT  443

seq1  TAAAGCATCAGAGATGGGTGACAGGAAAATATCTCCAAACCAGTTGTCAC  496
      |||||||||||||||||||||| ||   ||||||||||||||||||||||
seq2  TAAAGCATCAGAGATGGGTGACGGGGGGATATCTCCAAACCAGTTGTCAC  493

seq1  CCATTTTCTAGCAATTCACAAATTTTTTCTCTCACATTTCCTAGCAGACA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTCTAGCAATTCACAAATTTTTTCTCTCACATTTCCTAGCAGACA  543

seq1  CTTGCTTCTGCCCTGTTATCCACTGCACCTCTTCCACCCTAGGAAGTAGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTCTGCCCTGTTATCCACTGCACCTCTTCCACCCTAGGAAGTAGG  593

seq1  ATGGAGAGAGGATTGGGCTAAATCAAAGCTCTTCAGTTTCTAAAGTCAAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGAGAGGATTGGGCTAAATCAAAGCTCTTCAGTTTCTAAAGTCAAG  643

seq1  GCAAATATGAGAAGGCATTAGTAGGAATTGTCTTTATTGGACACTGGCCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATATGAGAAGGCATTAGTAGGAATTGTCTTTATTGGACACTGGCCT  693

seq1  CAAGCAACGGACCCCCTCCCCTCAAAGATTACAAAATAATTAGACTTTGC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAACGGACCCCCTCCCCTCAAAGATTACAAAATAATTAGACTTTGC  743

seq1  TAAAGGTTGCCAATGTGATATTAAGACAGTCCCCACGTCAATACCATATC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGTTGCCAATGTGATATTAAGACAGTCCCCACGTCAATACCATATC  793

seq1  ATGGCAGTTAATCCTTTCATAGATTATTATTGTGTATCCCTCCAGATAAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAGTTAATCCTTTCATAGATTATTATTGTGTATCCCTCCAGATAAA  843

seq1  ATCCACATTAAAATCTGGTTGCAATCATACCTAAAGTTATAGTTTTTGTC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACATTAAAATCTGGTTGCAATCATACCTAAAGTTATAGTTTTTGTC  893

seq1  CTAAAATGTATCCGAGACTTTTCAATATTTAGAAGTAGTCTTTTAAGCCA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATGTATCCGAGACTTTTCAATATTTAGAAGTAGTCTTTTAAGCCA  943

seq1  GACTTATTTATGCCTGTCATTGAGGTCAGATATTGCTTTTCTTCCATTTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTATTTATGCCTGTCATTGAGGTCAGATATTGCTTTTCTTCCATTTT  993

seq1  TTTGTGCTTATATATTTTTTATACCTAGGTTGCCGGTGTTAATATTCTAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGCTTATATATTTTTTATACCTAGGTTGCCGGTGTTAATATTCTAA  1043

seq1  TTTACAGCACATTAGAGATCCCTGAATTC  1075
      |||||||||||||||||||||||||||||
seq2  TTTACAGCACATTAGAGATCCCTGAATTC  1072